Wall clock time and date at job start Mon Mar 30 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.43920 * 110.99693 * 2 1 4 4 C 1.52480 * 105.41143 * 223.42693 * 3 2 1 5 5 C 1.46655 * 114.10764 * 269.64328 * 4 3 2 6 6 N 1.50237 * 106.98611 * 58.14185 * 5 4 3 7 7 S 1.65591 * 120.54971 * 111.48035 * 6 5 4 8 8 O 1.42098 * 104.28267 * 333.92826 * 7 6 5 9 9 O 1.42105 * 104.27528 * 206.07421 * 7 6 5 10 10 C 1.81399 * 104.45009 * 90.00163 * 7 6 5 11 11 C 1.50706 * 109.46955 * 179.97438 * 10 7 6 12 12 H 1.07995 * 120.00167 * 359.72129 * 11 10 7 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 7 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.43660 * 118.89422 * 291.75415 * 6 5 4 20 20 C 1.48818 * 110.99867 * 125.30866 * 2 1 3 21 21 H 1.08998 * 109.47022 * 63.95470 * 1 2 3 22 22 H 1.08998 * 109.46893 * 183.95525 * 1 2 3 23 23 H 1.08995 * 109.47248 * 303.95726 * 1 2 3 24 24 H 1.09002 * 110.24635 * 104.45582 * 3 2 1 25 25 H 1.08991 * 110.24898 * 342.39859 * 3 2 1 26 26 H 1.09005 * 108.55308 * 148.45286 * 4 3 2 27 27 H 1.08998 * 108.43934 * 30.75632 * 4 3 2 28 28 H 1.08994 * 109.94991 * 298.77002 * 5 4 3 29 29 H 1.08998 * 109.94594 * 177.51133 * 5 4 3 30 30 H 1.09000 * 109.47234 * 59.99842 * 10 7 6 31 31 H 1.09001 * 109.47232 * 299.99353 * 10 7 6 32 32 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 33 33 H 1.08999 * 108.13665 * 210.60985 * 19 6 5 34 34 H 1.09005 * 108.14088 * 327.12710 * 19 6 5 35 35 H 1.09000 * 109.23362 * 316.58863 * 20 2 1 36 36 H 1.08995 * 109.23465 * 76.01061 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9847 1.3436 0.0000 4 6 3.1266 1.3394 -1.0105 5 6 4.4357 1.0161 -0.4338 6 7 4.3114 -0.3378 0.2055 7 16 5.1039 -1.6450 -0.4310 8 8 5.2604 -1.3245 -1.8065 9 8 4.3237 -2.7605 -0.0229 10 6 6.7121 -1.6519 0.4080 11 6 7.5349 -2.8111 -0.0925 12 1 7.1290 -3.4797 -0.8372 13 6 8.8038 -3.0211 0.4042 14 7 9.2960 -2.2101 1.3150 15 14 9.8239 -4.4575 -0.2167 16 1 10.6239 -4.0257 -1.3909 17 1 10.7357 -4.9194 0.8607 18 1 8.9231 -5.5695 -0.6134 19 6 3.4888 -0.4806 1.3746 20 6 2.0023 -0.8030 1.1338 21 1 -0.3633 0.4512 -0.9233 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8523 24 1 2.3582 1.6043 0.9903 25 1 1.2099 2.0450 -0.3092 26 1 3.1849 2.3252 -1.4721 27 1 2.8986 0.6075 -1.7853 28 1 4.7048 1.7587 0.3172 29 1 5.1913 0.9888 -1.2188 30 1 6.5608 -1.7515 1.4829 31 1 7.2347 -0.7183 0.1996 32 1 10.1886 -2.3581 1.6647 33 1 3.9083 -1.2768 1.9894 34 1 3.5455 0.4467 1.9448 35 1 1.4330 -0.5744 2.0347 36 1 1.8987 -1.8632 0.9029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408194309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:19 Heat of formation + Delta-G solvation = -59.202640 kcal Electronic energy + Delta-G solvation = -19059.247655 eV Core-core repulsion = 16091.929232 eV Total energy + Delta-G solvation = -2967.318423 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.03893 -36.11321 -35.10629 -34.79446 -33.31823 -32.50171 -28.99224 -28.59335 -26.17980 -24.36644 -23.45364 -21.49378 -20.26971 -18.03215 -17.26502 -16.46109 -16.17979 -15.58452 -15.14187 -15.03094 -14.57125 -14.22122 -13.98520 -13.31410 -13.20543 -12.85993 -12.49460 -12.27315 -12.06287 -11.83398 -11.76094 -11.39330 -11.08485 -11.05368 -10.95831 -10.88806 -10.74775 -10.60927 -10.54601 -10.35565 -9.80349 -9.30260 -8.69581 -8.42274 -8.16194 -6.31481 -4.41846 1.37423 3.22536 3.27699 3.34019 3.52153 4.05770 4.25900 4.85877 4.90653 4.99854 5.03628 5.07402 5.14994 5.26328 5.36603 5.37062 5.47708 5.60470 5.66799 5.79355 5.83422 5.88833 5.99402 6.10473 6.16724 6.46905 6.54593 6.68151 6.83467 7.04694 7.22477 7.32416 7.47039 7.77747 8.60663 9.25742 10.80325 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.005671 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.376311 B = 4935.848672 C = 5036.992678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.541 5.541 3 C 0.059 3.941 4 C -0.135 4.135 5 C 0.130 3.870 6 N -0.997 5.997 7 S 2.586 3.414 8 O -0.978 6.978 9 O -0.977 6.977 10 C -0.423 4.423 11 C -0.533 4.533 12 H 0.069 0.931 13 C 0.076 3.924 14 N -0.880 5.880 15 Si 0.903 3.097 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.132 3.868 20 C 0.033 3.967 21 H 0.065 0.935 22 H 0.065 0.935 23 H 0.021 0.979 24 H 0.049 0.951 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.268 0.732 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.590 8.490 1.191 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.266 5.266 3 C -0.070 4.070 4 C -0.174 4.174 5 C 0.006 3.994 6 N -0.832 5.832 7 S 2.686 3.314 8 O -0.969 6.969 9 O -0.967 6.967 10 C -0.558 4.558 11 C -0.573 4.573 12 H 0.087 0.913 13 C -0.130 4.130 14 N -0.516 5.516 15 Si 0.729 3.271 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.191 1.191 19 C 0.004 3.996 20 C -0.096 4.096 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.675 7.756 0.224 14.861 hybrid contribution 0.642 0.013 1.029 1.213 sum -12.033 7.769 1.253 14.378 Atomic orbital electron populations 1.22431 0.87977 1.01703 1.00188 1.61828 1.06911 1.13415 1.44396 1.21598 0.97147 0.89418 0.98806 1.20862 0.94901 1.01857 0.99824 1.20809 0.98056 0.83220 0.97308 1.57977 1.60366 1.23610 1.41261 1.05922 0.77830 0.72333 0.75267 1.93452 1.87802 1.83296 1.32301 1.93458 1.68936 1.50584 1.83729 1.27801 1.13398 1.06003 1.08583 1.20345 1.00592 1.10808 1.25520 0.91336 1.24928 0.97230 0.96695 0.94151 1.69955 1.17192 1.37013 1.27443 0.86388 0.79943 0.81970 0.78766 1.19879 1.20634 1.19066 1.20489 0.89991 1.01935 0.87211 1.23293 0.95389 0.99641 0.91276 0.91621 0.91627 0.96078 0.93267 0.91678 0.91907 0.89942 0.91524 0.88833 0.90016 0.89916 0.92271 0.90422 0.91909 0.93786 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.25 60.07 0.56 0.83 16 2 N -0.54 -7.33 4.27 -243.41 -1.04 -8.37 16 3 C 0.06 0.69 5.50 -5.68 -0.03 0.66 16 4 C -0.14 -1.76 5.33 -30.03 -0.16 -1.92 16 5 C 0.13 1.86 5.98 -4.98 -0.03 1.83 16 6 N -1.00 -16.98 2.97 -116.23 -0.35 -17.32 16 7 S 2.59 56.67 5.28 -107.50 -0.57 56.10 16 8 O -0.98 -23.61 16.79 -57.54 -0.97 -24.58 16 9 O -0.98 -23.43 17.09 -57.54 -0.98 -24.41 16 10 C -0.42 -10.34 5.93 36.01 0.21 -10.13 16 11 C -0.53 -14.94 9.13 -34.44 -0.31 -15.25 16 12 H 0.07 1.90 7.71 -52.49 -0.40 1.49 16 13 C 0.08 2.11 5.46 -17.82 -0.10 2.02 16 14 N -0.88 -25.01 13.29 55.43 0.74 -24.27 16 15 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 16 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 19 C 0.13 1.94 4.65 -5.03 -0.02 1.92 16 20 C 0.03 0.46 6.04 -2.24 -0.01 0.45 16 21 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 22 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 23 H 0.02 0.20 8.13 -51.93 -0.42 -0.23 16 24 H 0.05 0.54 6.13 -51.93 -0.32 0.23 16 25 H 0.06 0.65 7.62 -51.93 -0.40 0.25 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.30 7.86 -51.93 -0.41 0.90 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 1.41 7.23 -51.93 -0.38 1.03 16 30 H 0.08 1.98 8.14 -51.92 -0.42 1.56 16 31 H 0.08 2.01 8.14 -51.92 -0.42 1.58 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 33 H 0.08 1.16 7.71 -51.93 -0.40 0.76 16 34 H 0.06 0.76 6.89 -51.93 -0.36 0.40 16 35 H 0.04 0.50 8.00 -51.93 -0.42 0.09 16 36 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 300.34 15.07 4.53 4.53 Total: -1.00 -33.39 300.34 -9.15 -42.54 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -5.59 Total: -0.71 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 0.10 Total: -19.60 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.65 Total: -49.97 kcal Atomic # 8 Polarization: -47.05 SS G_CDS: -1.95 Total: -49.00 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 56.67 SS G_CDS: -0.57 Total: 56.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.39 -9.15 -42.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408194309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.660 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds