Wall clock time and date at job start Mon Mar 30 2020 05:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.43920 * 110.99693 * 2 1 4 4 C 1.52480 * 105.41143 * 223.42693 * 3 2 1 5 5 C 1.46655 * 114.10764 * 269.64328 * 4 3 2 6 6 N 1.50237 * 106.98611 * 58.14185 * 5 4 3 7 7 S 1.65591 * 120.54971 * 111.48035 * 6 5 4 8 8 O 1.42098 * 104.28267 * 333.92826 * 7 6 5 9 9 O 1.42105 * 104.27528 * 206.07421 * 7 6 5 10 10 C 1.81399 * 104.45009 * 90.00163 * 7 6 5 11 11 C 1.50706 * 109.46955 * 179.97438 * 10 7 6 12 12 H 1.07995 * 120.00167 * 359.72129 * 11 10 7 13 13 C 1.37879 * 119.99394 * 179.97438 * 11 10 7 14 14 N 1.31514 * 120.00338 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99424 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47474 * 90.00322 * 15 13 11 17 17 H 1.48507 * 109.46754 * 210.00056 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99887 * 15 13 11 19 19 C 1.43660 * 118.89422 * 291.75415 * 6 5 4 20 20 C 1.48818 * 110.99867 * 125.30866 * 2 1 3 21 21 H 1.08998 * 109.47022 * 63.95470 * 1 2 3 22 22 H 1.08998 * 109.46893 * 183.95525 * 1 2 3 23 23 H 1.08995 * 109.47248 * 303.95726 * 1 2 3 24 24 H 1.09002 * 110.24635 * 104.45582 * 3 2 1 25 25 H 1.08991 * 110.24898 * 342.39859 * 3 2 1 26 26 H 1.09005 * 108.55308 * 148.45286 * 4 3 2 27 27 H 1.08998 * 108.43934 * 30.75632 * 4 3 2 28 28 H 1.08994 * 109.94991 * 298.77002 * 5 4 3 29 29 H 1.08998 * 109.94594 * 177.51133 * 5 4 3 30 30 H 1.09000 * 109.47234 * 59.99842 * 10 7 6 31 31 H 1.09001 * 109.47232 * 299.99353 * 10 7 6 32 32 H 0.96996 * 119.99730 * 179.97438 * 14 13 11 33 33 H 1.08999 * 108.13665 * 210.60985 * 19 6 5 34 34 H 1.09005 * 108.14088 * 327.12710 * 19 6 5 35 35 H 1.09000 * 109.23362 * 316.58863 * 20 2 1 36 36 H 1.08995 * 109.23465 * 76.01061 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9847 1.3436 0.0000 4 6 3.1266 1.3394 -1.0105 5 6 4.4357 1.0161 -0.4338 6 7 4.3114 -0.3378 0.2055 7 16 5.1039 -1.6450 -0.4310 8 8 5.2604 -1.3245 -1.8065 9 8 4.3237 -2.7605 -0.0229 10 6 6.7121 -1.6519 0.4080 11 6 7.5349 -2.8111 -0.0925 12 1 7.1290 -3.4797 -0.8372 13 6 8.8038 -3.0211 0.4042 14 7 9.2960 -2.2101 1.3150 15 14 9.8239 -4.4575 -0.2167 16 1 10.6239 -4.0257 -1.3909 17 1 10.7357 -4.9194 0.8607 18 1 8.9231 -5.5695 -0.6134 19 6 3.4888 -0.4806 1.3746 20 6 2.0023 -0.8030 1.1338 21 1 -0.3633 0.4512 -0.9233 22 1 -0.3633 -1.0252 0.0709 23 1 -0.3633 0.5740 0.8523 24 1 2.3582 1.6043 0.9903 25 1 1.2099 2.0450 -0.3092 26 1 3.1849 2.3252 -1.4721 27 1 2.8986 0.6075 -1.7853 28 1 4.7048 1.7587 0.3172 29 1 5.1913 0.9888 -1.2188 30 1 6.5608 -1.7515 1.4829 31 1 7.2347 -0.7183 0.1996 32 1 10.1886 -2.3581 1.6647 33 1 3.9083 -1.2768 1.9894 34 1 3.5455 0.4467 1.9448 35 1 1.4330 -0.5744 2.0347 36 1 1.8987 -1.8632 0.9029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408194309.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:19 Heat of formation + Delta-G solvation = -84.938134 kcal Electronic energy + Delta-G solvation = -19060.363630 eV Core-core repulsion = 16091.929232 eV Total energy + Delta-G solvation = -2968.434398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.09287 -37.96847 -36.75517 -36.16119 -35.40418 -33.60007 -31.01652 -29.66439 -27.23466 -25.55371 -25.32411 -22.71943 -21.28303 -19.57790 -19.13039 -18.19050 -17.50496 -17.28210 -16.49192 -16.32422 -16.05886 -15.76734 -15.21674 -14.51025 -14.34845 -14.29757 -14.03280 -13.86432 -13.42413 -13.28288 -13.24233 -12.95349 -12.86421 -12.77385 -12.73037 -12.52884 -11.93364 -11.84604 -11.79651 -11.64600 -11.59096 -11.10102 -10.78451 -9.82089 -9.08722 -8.41650 -6.59917 -0.39156 1.37287 1.38481 1.50621 1.99122 2.31790 2.91978 3.10269 3.15866 3.44959 3.72993 4.05081 4.10417 4.18435 4.39056 4.41129 4.51800 4.59435 4.70100 4.71228 4.76617 4.83647 4.84114 4.99119 5.03502 5.04968 5.16154 5.29024 5.36637 5.51237 5.72672 5.84663 6.20652 6.43439 6.50511 7.11671 8.70861 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.042135 B = 0.005671 C = 0.005558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.376311 B = 4935.848672 C = 5036.992678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.569 5.569 3 C 0.062 3.938 4 C -0.134 4.134 5 C 0.122 3.878 6 N -0.991 5.991 7 S 2.617 3.383 8 O -1.003 7.003 9 O -1.001 7.001 10 C -0.433 4.433 11 C -0.569 4.569 12 H 0.060 0.940 13 C 0.027 3.973 14 N -0.907 5.907 15 Si 0.962 3.038 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.264 1.264 19 C 0.119 3.881 20 C 0.036 3.964 21 H 0.073 0.927 22 H 0.059 0.941 23 H 0.040 0.960 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.093 0.907 27 H 0.048 0.952 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.274 0.726 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 9.797 1.698 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.294 5.294 3 C -0.067 4.067 4 C -0.174 4.174 5 C -0.001 4.001 6 N -0.829 5.829 7 S 2.716 3.284 8 O -0.994 6.994 9 O -0.991 6.991 10 C -0.566 4.566 11 C -0.607 4.607 12 H 0.078 0.922 13 C -0.176 4.176 14 N -0.544 5.544 15 Si 0.784 3.216 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.189 1.189 19 C -0.008 4.008 20 C -0.094 4.094 21 H 0.092 0.908 22 H 0.078 0.922 23 H 0.058 0.942 24 H 0.081 0.919 25 H 0.106 0.894 26 H 0.111 0.889 27 H 0.067 0.933 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.462 9.065 0.736 16.246 hybrid contribution 0.812 -0.302 0.886 1.239 sum -12.650 8.763 1.622 15.474 Atomic orbital electron populations 1.22448 0.86406 1.01856 1.01402 1.61758 1.08594 1.14571 1.44516 1.21648 0.97099 0.88900 0.99007 1.20859 0.94643 1.02389 0.99483 1.21154 0.98802 0.82103 0.98013 1.57603 1.59751 1.23470 1.42118 1.04674 0.76645 0.72759 0.74342 1.93409 1.88015 1.84006 1.33942 1.93416 1.68854 1.52851 1.84006 1.27855 1.15544 1.04649 1.08593 1.20754 1.01882 1.12111 1.25985 0.92182 1.25814 0.98281 0.99326 0.94210 1.70021 1.17825 1.38394 1.28145 0.85493 0.78518 0.78712 0.78885 1.18784 1.19126 1.18855 1.20802 0.90165 1.03576 0.86267 1.23191 0.95079 0.98276 0.92806 0.90846 0.92204 0.94192 0.91906 0.89430 0.88882 0.93303 0.87946 0.90235 0.90482 0.90361 0.91690 0.91323 0.88236 0.90840 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.25 127.69 1.18 1.69 16 2 N -0.57 -14.22 4.27 -924.01 -3.95 -18.17 16 3 C 0.06 1.23 5.50 86.69 0.48 1.71 16 4 C -0.13 -3.18 5.33 28.46 0.15 -3.03 16 5 C 0.12 3.26 5.98 83.69 0.50 3.76 16 6 N -0.99 -32.99 2.97 -521.65 -1.55 -34.53 16 7 S 2.62 117.10 5.28 -56.49 -0.30 116.80 16 8 O -1.00 -49.57 16.79 -127.65 -2.14 -51.72 16 9 O -1.00 -49.26 17.09 -127.65 -2.18 -51.45 16 10 C -0.43 -21.79 5.93 71.24 0.42 -21.37 16 11 C -0.57 -32.63 9.13 25.60 0.23 -32.40 16 12 H 0.06 3.43 7.71 -2.91 -0.02 3.41 16 13 C 0.03 1.51 5.46 84.66 0.46 1.97 16 14 N -0.91 -51.97 13.29 21.45 0.28 -51.68 16 15 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 16 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 17 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 18 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.12 3.31 4.65 87.24 0.41 3.71 16 20 C 0.04 0.93 6.04 86.27 0.52 1.45 16 21 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.06 1.18 8.09 -2.39 -0.02 1.16 16 23 H 0.04 0.61 8.13 -2.39 -0.02 0.59 16 24 H 0.06 1.10 6.13 -2.39 -0.01 1.08 16 25 H 0.09 1.37 7.62 -2.39 -0.02 1.35 16 26 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.05 1.50 7.86 -2.39 -0.02 1.48 16 28 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.08 2.35 7.23 -2.39 -0.02 2.33 16 30 H 0.08 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.08 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 33 H 0.07 2.02 7.71 -2.39 -0.02 2.00 16 34 H 0.10 2.05 6.89 -2.38 -0.02 2.04 16 35 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -72.75 300.34 -2.40 -75.15 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.05 Total: 12.85 kcal Atomic # 6 Polarization: -46.86 SS G_CDS: 4.36 Total: -42.51 kcal Atomic # 7 Polarization: -99.17 SS G_CDS: -5.21 Total: -104.38 kcal Atomic # 8 Polarization: -98.84 SS G_CDS: -4.32 Total: -103.16 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: 117.10 SS G_CDS: -0.30 Total: 116.80 kcal Total: -72.75 -2.40 -75.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408194309.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.791 kcal (2) G-P(sol) polarization free energy of solvation -72.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds