Wall clock time and date at job start Mon Mar 30 2020 05:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 113.41153 * 2 1 4 4 C 1.53497 * 114.20758 * 133.19882 * 2 1 3 5 5 N 1.47063 * 87.98594 * 87.52238 * 4 2 1 6 6 S 1.65602 * 136.05862 * 206.86677 * 5 4 2 7 7 O 1.42099 * 106.40260 * 18.43522 * 6 5 4 8 8 O 1.42101 * 106.40360 * 151.35994 * 6 5 4 9 9 N 1.65601 * 107.21552 * 264.89602 * 6 5 4 10 10 C 1.46497 * 120.00034 * 95.57201 * 9 6 5 11 11 C 1.46500 * 119.99986 * 275.57148 * 9 6 5 12 12 C 1.50701 * 109.47216 * 113.40968 * 11 9 6 13 13 H 1.08000 * 120.00382 * 4.60076 * 12 11 9 14 14 C 1.37879 * 120.00205 * 184.60435 * 12 11 9 15 15 N 1.31514 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00125 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47108 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46963 * 120.00286 * 16 14 12 19 19 H 1.48504 * 109.47258 * 239.99991 * 16 14 12 20 20 C 1.47074 * 87.88443 * 27.12301 * 5 4 2 21 21 H 1.08997 * 113.46883 * 87.65986 * 20 5 4 22 22 C 1.53005 * 113.46532 * 218.10279 * 20 5 4 23 23 H 1.09004 * 109.47430 * 292.31947 * 1 2 3 24 24 H 1.09005 * 109.47190 * 52.32043 * 1 2 3 25 25 H 1.09002 * 109.47327 * 172.31865 * 1 2 3 26 26 H 1.08998 * 113.46577 * 332.74033 * 4 2 1 27 27 H 1.09004 * 113.46939 * 202.30252 * 4 2 1 28 28 H 1.08995 * 109.47135 * 90.00063 * 10 9 6 29 29 H 1.09007 * 109.47195 * 210.00063 * 10 9 6 30 30 H 1.08999 * 109.47206 * 329.99372 * 10 9 6 31 31 H 1.09008 * 109.47381 * 233.40700 * 11 9 6 32 32 H 1.08993 * 109.47400 * 353.40649 * 11 9 6 33 33 H 0.96994 * 120.00129 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47036 * 40.49322 * 22 20 5 35 35 H 1.08999 * 109.46821 * 160.49398 * 22 20 5 36 36 H 1.09000 * 109.47105 * 280.49033 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9630 1.0003 0.0000 4 6 2.1593 -0.9583 1.0206 5 7 2.0802 -2.0143 0.0001 6 16 1.9615 -3.6661 0.0001 7 8 1.5068 -4.0357 1.2946 8 8 1.2772 -4.0192 -1.1942 9 7 3.4974 -4.2678 -0.1457 10 6 4.2481 -4.6571 1.0506 11 6 4.1054 -4.4109 -1.4708 12 6 5.2651 -3.4569 -1.5971 13 1 5.5702 -2.8624 -0.7487 14 6 5.9367 -3.3429 -2.7959 15 7 5.5648 -4.0664 -3.8293 16 14 7.3737 -2.1599 -2.9526 17 1 7.5893 -1.4685 -1.6563 18 1 8.5986 -2.9148 -3.3203 19 1 7.0761 -1.1562 -4.0059 20 6 2.1594 -0.9583 -1.0205 21 1 3.1811 -0.6931 -1.2923 22 6 1.2713 -1.2203 -2.2386 23 1 -0.3634 0.3903 0.9507 24 1 -0.3634 0.6282 -0.8134 25 1 -0.3634 -1.0184 -0.1374 26 1 1.5266 -1.1450 1.8883 27 1 3.1811 -0.6931 1.2924 28 1 4.0545 -5.7058 1.2758 29 1 5.3141 -4.5145 0.8730 30 1 3.9345 -4.0406 1.8930 31 1 4.4605 -5.4335 -1.5992 32 1 3.3639 -4.1850 -2.2371 33 1 6.0375 -3.9865 -4.6725 34 1 0.3154 -1.6281 -1.9102 35 1 1.1032 -0.2856 -2.7734 36 1 1.7629 -1.9339 -2.8999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451614317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:58 Heat of formation + Delta-G solvation = -45.224721 kcal Electronic energy + Delta-G solvation = -19439.326708 eV Core-core repulsion = 16472.614413 eV Total energy + Delta-G solvation = -2966.712295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.64699 -36.59211 -35.46036 -35.17599 -32.47901 -30.65240 -29.67639 -27.69123 -25.92524 -25.20554 -23.00251 -22.16173 -19.65156 -17.87232 -17.13059 -16.69447 -16.42580 -15.71191 -15.12189 -14.73518 -14.22971 -13.83931 -13.60157 -13.21651 -13.09656 -12.36577 -12.13958 -12.01419 -11.95075 -11.69839 -11.64902 -11.60428 -11.43929 -11.22370 -11.18114 -11.05819 -10.77607 -10.60137 -10.30111 -10.08752 -9.98218 -9.74467 -8.72122 -8.54855 -7.97678 -6.13625 -4.20086 1.25781 3.21027 3.29417 3.31619 3.47111 4.17518 4.33319 4.45485 4.80982 4.91135 5.12122 5.19888 5.47838 5.56721 5.64045 5.67747 5.75507 5.82663 5.94376 5.98951 6.04836 6.13589 6.27896 6.30272 6.36941 6.45868 6.67017 6.75683 6.98032 7.34173 7.41100 7.62243 7.83654 8.15445 8.85103 9.45574 10.94490 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.008888 C = 0.007447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.008783 B = 3149.441174 C = 3758.872738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.127 4.127 3 H 0.090 0.910 4 C 0.130 3.870 5 N -1.038 6.038 6 S 2.802 3.198 7 O -0.998 6.998 8 O -0.973 6.973 9 N -0.999 5.999 10 C 0.107 3.893 11 C 0.247 3.753 12 C -0.534 4.534 13 H 0.062 0.938 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.895 3.105 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.283 1.283 20 C 0.163 3.837 21 H 0.096 0.904 22 C -0.163 4.163 23 H 0.056 0.944 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.879 8.252 7.333 12.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.148 4.148 3 H 0.108 0.892 4 C 0.003 3.997 5 N -0.877 5.877 6 S 2.812 3.188 7 O -0.982 6.982 8 O -0.958 6.958 9 N -0.841 5.841 10 C -0.040 4.040 11 C 0.125 3.875 12 C -0.573 4.573 13 H 0.080 0.920 14 C -0.141 4.141 15 N -0.528 5.528 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.209 1.209 20 C 0.056 3.944 21 H 0.114 0.886 22 C -0.221 4.221 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.092 0.908 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.650 7.408 7.207 12.290 hybrid contribution 1.496 0.654 -0.244 1.651 sum -5.154 8.062 6.964 11.834 Atomic orbital electron populations 1.21509 0.93434 1.02272 1.01456 1.22960 0.96546 0.97963 0.97339 0.89199 1.22396 1.00363 0.84918 0.91991 1.60801 1.89082 1.21148 1.16662 1.01290 0.73568 0.71416 0.72516 1.93517 1.80938 1.81870 1.41901 1.93575 1.72193 1.81591 1.48423 1.57755 1.34605 1.77427 1.14290 1.21189 0.98504 0.98623 0.85708 1.19149 0.94133 0.97621 0.76646 1.21502 1.15010 1.23698 0.97120 0.91966 1.24983 0.97483 0.95988 0.95635 1.69954 1.40783 1.39964 1.02054 0.86504 0.82298 0.80862 0.78098 1.19759 1.20942 1.20857 1.22095 0.99573 0.83721 0.88967 0.88572 1.22060 1.00267 1.02143 0.97620 0.92481 0.92120 0.92290 0.90803 0.90334 0.93972 0.90533 0.92980 0.95403 0.93045 0.92622 0.91828 0.91642 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.59 37.15 0.32 -1.10 16 2 C -0.13 -1.50 4.69 -90.11 -0.42 -1.92 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C 0.13 1.73 8.30 -8.51 -0.07 1.66 16 5 N -1.04 -17.97 3.91 -117.84 -0.46 -18.43 16 6 S 2.80 58.30 6.64 -107.50 -0.71 57.58 16 7 O -1.00 -21.54 17.02 -57.17 -0.97 -22.51 16 8 O -0.97 -22.78 15.65 -57.17 -0.90 -23.67 16 9 N -1.00 -21.74 3.33 -123.05 -0.41 -22.15 16 10 C 0.11 1.98 10.18 59.85 0.61 2.59 16 11 C 0.25 6.29 5.57 -5.19 -0.03 6.26 16 12 C -0.53 -14.02 8.70 -34.44 -0.30 -14.31 16 13 H 0.06 1.59 7.64 -52.49 -0.40 1.19 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 16 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 C 0.16 2.52 4.65 -72.39 -0.34 2.18 16 21 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 22 C -0.16 -2.59 8.14 37.16 0.30 -2.28 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.76 6.89 -51.93 -0.36 0.40 16 26 H 0.07 0.92 8.12 -51.93 -0.42 0.50 16 27 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.42 7.44 -51.92 -0.39 1.03 16 30 H 0.05 0.86 7.64 -51.93 -0.40 0.47 16 31 H 0.03 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.05 1.42 6.97 -51.93 -0.36 1.06 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.06 1.02 6.62 -51.93 -0.34 0.67 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -31.72 307.87 -8.73 -40.45 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.61 Total: -1.37 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -0.02 Total: -5.36 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: -0.13 Total: -65.19 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -1.87 Total: -46.19 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 58.30 SS G_CDS: -0.71 Total: 57.58 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.72 -8.73 -40.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451614317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.774 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds