Wall clock time and date at job start Mon Mar 30 2020 05:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 113.41153 * 2 1 4 4 C 1.53497 * 114.20758 * 133.19882 * 2 1 3 5 5 N 1.47063 * 87.98594 * 87.52238 * 4 2 1 6 6 S 1.65602 * 136.05862 * 206.86677 * 5 4 2 7 7 O 1.42099 * 106.40260 * 18.43522 * 6 5 4 8 8 O 1.42101 * 106.40360 * 151.35994 * 6 5 4 9 9 N 1.65601 * 107.21552 * 264.89602 * 6 5 4 10 10 C 1.46497 * 120.00034 * 95.57201 * 9 6 5 11 11 C 1.46500 * 119.99986 * 275.57148 * 9 6 5 12 12 C 1.50701 * 109.47216 * 113.40968 * 11 9 6 13 13 H 1.08000 * 120.00382 * 4.60076 * 12 11 9 14 14 C 1.37879 * 120.00205 * 184.60435 * 12 11 9 15 15 N 1.31514 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00125 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47108 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46963 * 120.00286 * 16 14 12 19 19 H 1.48504 * 109.47258 * 239.99991 * 16 14 12 20 20 C 1.47074 * 87.88443 * 27.12301 * 5 4 2 21 21 H 1.08997 * 113.46883 * 87.65986 * 20 5 4 22 22 C 1.53005 * 113.46532 * 218.10279 * 20 5 4 23 23 H 1.09004 * 109.47430 * 292.31947 * 1 2 3 24 24 H 1.09005 * 109.47190 * 52.32043 * 1 2 3 25 25 H 1.09002 * 109.47327 * 172.31865 * 1 2 3 26 26 H 1.08998 * 113.46577 * 332.74033 * 4 2 1 27 27 H 1.09004 * 113.46939 * 202.30252 * 4 2 1 28 28 H 1.08995 * 109.47135 * 90.00063 * 10 9 6 29 29 H 1.09007 * 109.47195 * 210.00063 * 10 9 6 30 30 H 1.08999 * 109.47206 * 329.99372 * 10 9 6 31 31 H 1.09008 * 109.47381 * 233.40700 * 11 9 6 32 32 H 1.08993 * 109.47400 * 353.40649 * 11 9 6 33 33 H 0.96994 * 120.00129 * 180.02562 * 15 14 12 34 34 H 1.08993 * 109.47036 * 40.49322 * 22 20 5 35 35 H 1.08999 * 109.46821 * 160.49398 * 22 20 5 36 36 H 1.09000 * 109.47105 * 280.49033 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9630 1.0003 0.0000 4 6 2.1593 -0.9583 1.0206 5 7 2.0802 -2.0143 0.0001 6 16 1.9615 -3.6661 0.0001 7 8 1.5068 -4.0357 1.2946 8 8 1.2772 -4.0192 -1.1942 9 7 3.4974 -4.2678 -0.1457 10 6 4.2481 -4.6571 1.0506 11 6 4.1054 -4.4109 -1.4708 12 6 5.2651 -3.4569 -1.5971 13 1 5.5702 -2.8624 -0.7487 14 6 5.9367 -3.3429 -2.7959 15 7 5.5648 -4.0664 -3.8293 16 14 7.3737 -2.1599 -2.9526 17 1 7.5893 -1.4685 -1.6563 18 1 8.5986 -2.9148 -3.3203 19 1 7.0761 -1.1562 -4.0059 20 6 2.1594 -0.9583 -1.0205 21 1 3.1811 -0.6931 -1.2923 22 6 1.2713 -1.2203 -2.2386 23 1 -0.3634 0.3903 0.9507 24 1 -0.3634 0.6282 -0.8134 25 1 -0.3634 -1.0184 -0.1374 26 1 1.5266 -1.1450 1.8883 27 1 3.1811 -0.6931 1.2924 28 1 4.0545 -5.7058 1.2758 29 1 5.3141 -4.5145 0.8730 30 1 3.9345 -4.0406 1.8930 31 1 4.4605 -5.4335 -1.5992 32 1 3.3639 -4.1850 -2.2371 33 1 6.0375 -3.9865 -4.6725 34 1 0.3154 -1.6281 -1.9102 35 1 1.1032 -0.2856 -2.7734 36 1 1.7629 -1.9339 -2.8999 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451614317.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:09:57 Heat of formation + Delta-G solvation = -68.079725 kcal Electronic energy + Delta-G solvation = -19440.317775 eV Core-core repulsion = 16472.614413 eV Total energy + Delta-G solvation = -2967.703362 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.79916 -38.31408 -37.26064 -36.91371 -34.49241 -31.78246 -30.85234 -29.61564 -27.10714 -26.90933 -24.17989 -24.08765 -20.89857 -19.38100 -18.69921 -18.44660 -18.16875 -17.35577 -16.58835 -16.25305 -15.70162 -15.24999 -15.06772 -14.81400 -14.42914 -14.07553 -13.95147 -13.42625 -13.31292 -13.27214 -13.07669 -12.96227 -12.86757 -12.72485 -12.63158 -12.56516 -12.45787 -12.33904 -12.00353 -11.71336 -11.36381 -11.09871 -10.63445 -10.06428 -9.71643 -8.19273 -6.34181 -0.35206 1.42427 1.43744 1.55880 1.93106 2.41342 2.58043 3.12188 3.19641 3.50251 3.78284 4.00256 4.15974 4.36771 4.52453 4.56420 4.64372 4.65282 4.73520 4.76907 4.95325 4.99100 5.04383 5.11933 5.15225 5.17318 5.23552 5.33702 5.41905 5.59964 5.71782 5.78528 5.87510 6.09116 6.77947 7.36343 8.89680 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019867 B = 0.008888 C = 0.007447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1409.008783 B = 3149.441174 C = 3758.872738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.099 4.099 3 H 0.129 0.871 4 C 0.122 3.878 5 N -1.045 6.045 6 S 2.810 3.190 7 O -1.007 7.007 8 O -1.010 7.010 9 N -1.009 6.009 10 C 0.100 3.900 11 C 0.262 3.738 12 C -0.537 4.537 13 H 0.071 0.929 14 C 0.009 3.991 15 N -0.930 5.930 16 Si 0.967 3.033 17 H -0.258 1.258 18 H -0.283 1.283 19 H -0.278 1.278 20 C 0.148 3.852 21 H 0.091 0.909 22 C -0.160 4.160 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.031 0.969 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.002 0.998 32 H 0.020 0.980 33 H 0.266 0.734 34 H 0.056 0.944 35 H 0.098 0.902 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.297 11.122 8.829 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.120 4.120 3 H 0.147 0.853 4 C -0.003 4.003 5 N -0.888 5.888 6 S 2.822 3.178 7 O -0.992 6.992 8 O -0.994 6.994 9 N -0.850 5.850 10 C -0.046 4.046 11 C 0.139 3.861 12 C -0.576 4.576 13 H 0.089 0.911 14 C -0.191 4.191 15 N -0.570 5.570 16 Si 0.792 3.208 17 H -0.181 1.181 18 H -0.209 1.209 19 H -0.204 1.204 20 C 0.043 3.957 21 H 0.109 0.891 22 C -0.218 4.218 23 H 0.097 0.903 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.102 0.898 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.020 0.980 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.071 10.265 8.743 14.787 hybrid contribution 1.251 -0.226 -0.680 1.441 sum -4.820 10.039 8.063 13.748 Atomic orbital electron populations 1.21580 0.92814 1.01189 1.03422 1.22923 0.96861 0.98496 0.93726 0.85323 1.22799 1.01962 0.83473 0.92019 1.60658 1.88613 1.20305 1.19214 1.00766 0.73087 0.72350 0.71591 1.93490 1.81007 1.82775 1.41883 1.93522 1.73126 1.82911 1.49876 1.57733 1.34919 1.78584 1.13714 1.21387 0.98253 0.99814 0.85134 1.18684 0.93373 0.96127 0.77945 1.21719 1.14881 1.23517 0.97461 0.91053 1.25897 1.00318 0.97679 0.95186 1.70098 1.42351 1.41807 1.02730 0.85373 0.78330 0.78485 0.78655 1.18137 1.20903 1.20375 1.22388 0.99716 0.84302 0.89344 0.89099 1.22043 0.99576 1.02585 0.97616 0.90257 0.90461 0.94941 0.89764 0.88596 0.92990 0.90569 0.90696 0.97993 0.96167 0.92499 0.92449 0.88350 0.95217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.59 71.98 0.62 -1.87 16 2 C -0.10 -1.97 4.69 -10.46 -0.05 -2.02 16 3 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.12 2.88 8.30 83.18 0.69 3.57 16 5 N -1.05 -35.21 3.91 -526.74 -2.06 -37.28 16 6 S 2.81 118.57 6.64 -56.49 -0.37 118.19 16 7 O -1.01 -43.11 17.02 -128.00 -2.18 -45.29 16 8 O -1.01 -49.49 15.65 -128.00 -2.00 -51.49 16 9 N -1.01 -44.60 3.33 -543.22 -1.81 -46.41 16 10 C 0.10 3.65 10.18 127.77 1.30 4.95 16 11 C 0.26 13.90 5.57 85.63 0.48 14.37 16 12 C -0.54 -28.37 8.70 25.60 0.22 -28.15 16 13 H 0.07 3.57 7.64 -2.91 -0.02 3.55 16 14 C 0.01 0.46 5.46 84.66 0.46 0.92 16 15 N -0.93 -54.29 13.29 21.45 0.28 -54.01 16 16 Si 0.97 41.50 29.54 68.60 2.03 43.53 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 20 C 0.15 4.38 4.65 41.79 0.19 4.57 16 21 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 22 C -0.16 -5.09 8.14 71.98 0.59 -4.50 16 23 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 24 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 25 H 0.03 0.78 6.89 -2.39 -0.02 0.76 16 26 H 0.08 1.83 8.12 -2.39 -0.02 1.81 16 27 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 28 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.76 7.44 -2.38 -0.02 2.75 16 30 H 0.07 2.37 7.64 -2.39 -0.02 2.35 16 31 H 0.00 0.12 8.14 -2.38 -0.02 0.10 16 32 H 0.02 1.19 6.97 -2.39 -0.02 1.17 16 33 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.06 1.86 6.62 -2.39 -0.02 1.85 16 35 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -70.19 307.87 -0.56 -70.75 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.05 Total: 10.13 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 4.50 Total: -8.14 kcal Atomic # 7 Polarization: -134.11 SS G_CDS: -3.58 Total: -137.69 kcal Atomic # 8 Polarization: -92.59 SS G_CDS: -4.18 Total: -96.78 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 118.57 SS G_CDS: -0.37 Total: 118.19 kcal Total: -70.19 -0.56 -70.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451614317.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.675 kcal (2) G-P(sol) polarization free energy of solvation -70.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds