Wall clock time and date at job start Mon Mar 30 2020 05:10:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 112.94207 * 2 1 4 4 C 1.53947 * 113.83877 * 228.31667 * 2 1 3 5 5 N 1.47570 * 86.11780 * 222.03391 * 4 2 1 6 6 S 1.65607 * 134.49186 * 204.64225 * 5 4 2 7 7 O 1.42097 * 106.40249 * 23.54018 * 6 5 4 8 8 O 1.42102 * 106.39841 * 156.45804 * 6 5 4 9 9 N 1.65601 * 107.21656 * 269.99523 * 6 5 4 10 10 C 1.46507 * 119.99536 * 90.00029 * 9 6 5 11 11 C 1.46497 * 120.00479 * 270.00060 * 9 6 5 12 12 C 1.50709 * 109.47199 * 94.99727 * 11 9 6 13 13 H 1.07997 * 119.99702 * 0.02562 * 12 11 9 14 14 C 1.37871 * 119.99811 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99655 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00368 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47215 * 89.99417 * 16 14 12 18 18 H 1.48497 * 109.47051 * 210.00061 * 16 14 12 19 19 H 1.48498 * 109.46898 * 329.99415 * 16 14 12 20 20 C 1.47582 * 91.01526 * 24.64091 * 5 4 2 21 21 H 1.09003 * 113.86653 * 221.04884 * 20 5 4 22 22 C 1.52997 * 113.76991 * 89.66265 * 20 5 4 23 23 H 1.08999 * 109.46713 * 288.40398 * 1 2 3 24 24 H 1.08994 * 109.47264 * 48.40410 * 1 2 3 25 25 H 1.08998 * 109.46953 * 168.40517 * 1 2 3 26 26 H 1.09001 * 113.76846 * 336.33527 * 4 2 1 27 27 H 1.09008 * 113.77062 * 107.72810 * 4 2 1 28 28 H 1.08998 * 109.46890 * 90.00152 * 10 9 6 29 29 H 1.09004 * 109.46566 * 210.00097 * 10 9 6 30 30 H 1.08997 * 109.47103 * 330.00005 * 10 9 6 31 31 H 1.08994 * 109.47659 * 214.99937 * 11 9 6 32 32 H 1.08998 * 109.46869 * 335.00262 * 11 9 6 33 33 H 0.96997 * 120.00092 * 179.97438 * 15 14 12 34 34 H 1.09002 * 109.47153 * 323.50371 * 22 20 5 35 35 H 1.09001 * 109.46832 * 203.50562 * 22 20 5 36 36 H 1.09004 * 109.47261 * 83.50544 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9549 1.0038 0.0000 4 6 2.1522 -0.9364 -1.0516 5 7 3.1121 -1.3180 0.0023 6 16 4.6511 -1.9297 0.0042 7 8 5.2264 -1.5725 -1.2450 8 8 5.2236 -1.5713 1.2545 9 7 4.5223 -3.5807 0.0049 10 6 4.4667 -4.3115 -1.2636 11 6 4.4640 -4.3104 1.2739 12 6 3.0245 -4.5575 1.6456 13 1 2.2324 -4.2064 1.0008 14 6 2.7189 -5.2326 2.8082 15 7 1.4627 -5.4477 3.1328 16 14 4.0889 -5.8404 3.9231 17 1 4.4232 -4.7877 4.9156 18 1 3.6425 -7.0661 4.6326 19 1 5.2901 -6.1507 3.1070 20 6 2.1498 -0.9355 1.0538 21 1 2.6018 -0.4107 1.8955 22 6 1.2251 -2.0746 1.4874 23 1 -0.3633 0.3245 0.9751 24 1 -0.3633 0.6822 -0.7685 25 1 -0.3633 -1.0067 -0.2065 26 1 1.4941 -1.7483 -1.3613 27 1 2.6077 -0.4124 -1.8920 28 1 5.4775 -4.5727 -1.5770 29 1 3.8802 -5.2210 -1.1334 30 1 4.0011 -3.6846 -2.0240 31 1 4.9809 -5.2642 1.1687 32 1 4.9446 -3.7208 2.0545 33 1 1.2477 -5.9230 3.9505 34 1 0.9708 -2.6858 0.6214 35 1 0.3144 -1.6591 1.9189 36 1 1.7312 -2.6905 2.2309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451614318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:01 Heat of formation + Delta-G solvation = -41.875260 kcal Electronic energy + Delta-G solvation = -19586.325140 eV Core-core repulsion = 16619.758089 eV Total energy + Delta-G solvation = -2966.567051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.38794 -36.63319 -35.59299 -35.22722 -32.48534 -30.91753 -29.11819 -28.32715 -25.36928 -25.06058 -23.74724 -21.80120 -19.25004 -17.88458 -17.11685 -16.90333 -16.59278 -15.78453 -15.31955 -14.59018 -14.20629 -13.70788 -13.47699 -13.06638 -12.62527 -12.50345 -12.40989 -12.33448 -11.94608 -11.81650 -11.59412 -11.49532 -11.38965 -11.22937 -11.17984 -10.93369 -10.70532 -10.45880 -10.26184 -10.20694 -9.81654 -9.44943 -8.70773 -8.58098 -8.00830 -6.16235 -4.15013 1.23485 3.25785 3.32117 3.37003 3.40957 4.13415 4.35349 4.55946 4.82918 4.99273 5.15322 5.18785 5.52657 5.54671 5.68224 5.79173 5.83055 5.91915 5.95518 6.01383 6.13303 6.19911 6.23040 6.45064 6.49422 6.60218 6.68610 6.85728 7.05310 7.15363 7.41275 7.42207 7.56550 8.41974 8.88077 9.44812 10.94509 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.010021 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.260681 B = 2793.433312 C = 3645.542651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 H 0.093 0.907 4 C 0.130 3.870 5 N -1.033 6.033 6 S 2.800 3.200 7 O -0.997 6.997 8 O -0.979 6.979 9 N -0.995 5.995 10 C 0.108 3.892 11 C 0.212 3.788 12 C -0.542 4.542 13 H 0.093 0.907 14 C 0.078 3.922 15 N -0.891 5.891 16 Si 0.865 3.135 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.265 1.265 20 C 0.164 3.836 21 H 0.084 0.916 22 C -0.158 4.158 23 H 0.059 0.941 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 7.469 -6.662 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 H 0.111 0.889 4 C 0.004 3.996 5 N -0.872 5.872 6 S 2.811 3.189 7 O -0.981 6.981 8 O -0.963 6.963 9 N -0.835 5.835 10 C -0.039 4.039 11 C 0.088 3.912 12 C -0.581 4.581 13 H 0.111 0.889 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.692 3.308 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.190 1.190 20 C 0.058 3.942 21 H 0.102 0.898 22 C -0.216 4.216 23 H 0.078 0.922 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.559 7.760 -6.523 10.152 hybrid contribution 0.335 -0.876 0.670 1.153 sum -0.223 6.884 -5.853 9.038 Atomic orbital electron populations 1.21736 0.94256 1.02268 1.01677 1.23245 0.95732 0.98541 0.96862 0.88865 1.22703 0.89276 0.96249 0.91363 1.60807 1.30586 1.79689 1.16162 1.01267 0.72667 0.72489 0.72507 1.93528 1.75822 1.83407 1.45361 1.93548 1.75525 1.82814 1.44438 1.57526 1.88718 1.24661 1.12603 1.21207 1.00659 0.98019 0.84022 1.19601 0.98625 0.92775 0.80161 1.21652 0.91402 1.37372 1.07652 0.88942 1.24805 0.95187 0.95277 0.97296 1.69874 1.16815 1.41348 1.24839 0.87015 0.83159 0.78923 0.81715 1.19838 1.21151 1.19016 1.22231 0.87198 0.93979 0.90790 0.89825 1.22262 0.98412 0.97317 1.03606 0.92167 0.92888 0.91793 0.90214 0.90659 0.93834 0.90686 0.92794 0.94851 0.94127 0.92578 0.92168 0.92563 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.53 37.16 0.32 -1.19 16 2 C -0.12 -1.56 4.49 -89.69 -0.40 -1.96 16 3 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 4 C 0.13 1.81 8.17 -2.98 -0.02 1.79 16 5 N -1.03 -18.24 3.98 -111.72 -0.44 -18.69 16 6 S 2.80 57.64 6.61 -107.50 -0.71 56.93 16 7 O -1.00 -21.16 17.18 -57.17 -0.98 -22.15 16 8 O -0.98 -22.99 16.66 -57.17 -0.95 -23.94 16 9 N -0.99 -20.63 3.23 -123.05 -0.40 -21.02 16 10 C 0.11 1.87 10.31 59.85 0.62 2.48 16 11 C 0.21 4.97 4.48 -5.19 -0.02 4.95 16 12 C -0.54 -13.76 7.95 -34.44 -0.27 -14.03 16 13 H 0.09 2.42 5.79 -52.49 -0.30 2.11 16 14 C 0.08 2.06 5.41 -17.82 -0.10 1.96 16 15 N -0.89 -24.67 13.96 55.43 0.77 -23.89 16 16 Si 0.86 20.55 27.47 -169.99 -4.67 15.88 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 20 C 0.16 2.70 5.08 -66.87 -0.34 2.36 16 21 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 22 C -0.16 -2.86 7.35 37.16 0.27 -2.58 16 23 H 0.06 0.62 8.02 -51.93 -0.42 0.20 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.72 7.17 -51.93 -0.37 0.35 16 26 H 0.08 1.05 7.59 -51.93 -0.39 0.65 16 27 H 0.08 0.95 8.14 -51.92 -0.42 0.53 16 28 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 30 H 0.05 0.84 7.79 -51.93 -0.40 0.44 16 31 H 0.03 0.77 7.17 -51.93 -0.37 0.40 16 32 H 0.04 1.00 6.34 -51.93 -0.33 0.67 16 33 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 34 H 0.06 1.12 6.62 -51.93 -0.34 0.78 16 35 H 0.06 0.89 7.36 -51.93 -0.38 0.51 16 36 H 0.10 2.33 5.94 -51.93 -0.31 2.02 16 LS Contribution 298.51 15.07 4.50 4.50 Total: -1.00 -30.55 298.51 -8.17 -38.71 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.33 Total: -0.10 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: 0.05 Total: -6.23 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.07 Total: -63.60 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.94 Total: -46.09 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.67 Total: 15.88 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -0.71 Total: 56.93 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.55 -8.17 -38.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451614318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.163 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds