Wall clock time and date at job start Mon Mar 30 2020 05:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 112.94207 * 2 1 4 4 C 1.53947 * 113.83877 * 228.31667 * 2 1 3 5 5 N 1.47570 * 86.11780 * 222.03391 * 4 2 1 6 6 S 1.65607 * 134.49186 * 204.64225 * 5 4 2 7 7 O 1.42097 * 106.40249 * 23.54018 * 6 5 4 8 8 O 1.42102 * 106.39841 * 156.45804 * 6 5 4 9 9 N 1.65601 * 107.21656 * 269.99523 * 6 5 4 10 10 C 1.46507 * 119.99536 * 90.00029 * 9 6 5 11 11 C 1.46497 * 120.00479 * 270.00060 * 9 6 5 12 12 C 1.50709 * 109.47199 * 94.99727 * 11 9 6 13 13 H 1.07997 * 119.99702 * 0.02562 * 12 11 9 14 14 C 1.37871 * 119.99811 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99655 * 179.97438 * 14 12 11 16 16 Si 1.86797 * 120.00368 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47215 * 89.99417 * 16 14 12 18 18 H 1.48497 * 109.47051 * 210.00061 * 16 14 12 19 19 H 1.48498 * 109.46898 * 329.99415 * 16 14 12 20 20 C 1.47582 * 91.01526 * 24.64091 * 5 4 2 21 21 H 1.09003 * 113.86653 * 221.04884 * 20 5 4 22 22 C 1.52997 * 113.76991 * 89.66265 * 20 5 4 23 23 H 1.08999 * 109.46713 * 288.40398 * 1 2 3 24 24 H 1.08994 * 109.47264 * 48.40410 * 1 2 3 25 25 H 1.08998 * 109.46953 * 168.40517 * 1 2 3 26 26 H 1.09001 * 113.76846 * 336.33527 * 4 2 1 27 27 H 1.09008 * 113.77062 * 107.72810 * 4 2 1 28 28 H 1.08998 * 109.46890 * 90.00152 * 10 9 6 29 29 H 1.09004 * 109.46566 * 210.00097 * 10 9 6 30 30 H 1.08997 * 109.47103 * 330.00005 * 10 9 6 31 31 H 1.08994 * 109.47659 * 214.99937 * 11 9 6 32 32 H 1.08998 * 109.46869 * 335.00262 * 11 9 6 33 33 H 0.96997 * 120.00092 * 179.97438 * 15 14 12 34 34 H 1.09002 * 109.47153 * 323.50371 * 22 20 5 35 35 H 1.09001 * 109.46832 * 203.50562 * 22 20 5 36 36 H 1.09004 * 109.47261 * 83.50544 * 22 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9549 1.0038 0.0000 4 6 2.1522 -0.9364 -1.0516 5 7 3.1121 -1.3180 0.0023 6 16 4.6511 -1.9297 0.0042 7 8 5.2264 -1.5725 -1.2450 8 8 5.2236 -1.5713 1.2545 9 7 4.5223 -3.5807 0.0049 10 6 4.4667 -4.3115 -1.2636 11 6 4.4640 -4.3104 1.2739 12 6 3.0245 -4.5575 1.6456 13 1 2.2324 -4.2064 1.0008 14 6 2.7189 -5.2326 2.8082 15 7 1.4627 -5.4477 3.1328 16 14 4.0889 -5.8404 3.9231 17 1 4.4232 -4.7877 4.9156 18 1 3.6425 -7.0661 4.6326 19 1 5.2901 -6.1507 3.1070 20 6 2.1498 -0.9355 1.0538 21 1 2.6018 -0.4107 1.8955 22 6 1.2251 -2.0746 1.4874 23 1 -0.3633 0.3245 0.9751 24 1 -0.3633 0.6822 -0.7685 25 1 -0.3633 -1.0067 -0.2065 26 1 1.4941 -1.7483 -1.3613 27 1 2.6077 -0.4124 -1.8920 28 1 5.4775 -4.5727 -1.5770 29 1 3.8802 -5.2210 -1.1334 30 1 4.0011 -3.6846 -2.0240 31 1 4.9809 -5.2642 1.1687 32 1 4.9446 -3.7208 2.0545 33 1 1.2477 -5.9230 3.9505 34 1 0.9708 -2.6858 0.6214 35 1 0.3144 -1.6591 1.9189 36 1 1.7312 -2.6905 2.2309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451614318.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:10:00 Heat of formation + Delta-G solvation = -64.105672 kcal Electronic energy + Delta-G solvation = -19587.289123 eV Core-core repulsion = 16619.758089 eV Total energy + Delta-G solvation = -2967.531034 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.61816 -38.32243 -37.28716 -36.92783 -34.45685 -32.05704 -30.54736 -30.06987 -26.81560 -26.38666 -25.03446 -23.63759 -20.56516 -19.46006 -18.83618 -18.50873 -18.20221 -17.40845 -16.57794 -16.27450 -15.75778 -15.34570 -14.77782 -14.54394 -14.40725 -14.10127 -13.74423 -13.68091 -13.47960 -13.31169 -13.16251 -13.13577 -13.01435 -12.78772 -12.60429 -12.42116 -12.31093 -12.01865 -11.94247 -11.49000 -11.38426 -11.06187 -10.65500 -10.06090 -9.64010 -8.20824 -6.21163 -0.34402 1.35424 1.40591 1.45794 1.88696 2.37820 2.56330 3.11731 3.19261 3.55796 3.76691 4.02500 4.15523 4.43762 4.50905 4.57330 4.63793 4.68074 4.71128 4.80918 4.91666 4.96983 4.99228 5.13238 5.17621 5.25017 5.29757 5.35606 5.52537 5.57125 5.74387 5.82408 5.89222 6.39938 6.83331 7.40115 8.91600 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.019289 B = 0.010021 C = 0.007679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.260681 B = 2793.433312 C = 3645.542651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 H 0.112 0.888 4 C 0.125 3.875 5 N -1.039 6.039 6 S 2.806 3.194 7 O -1.004 7.004 8 O -1.014 7.014 9 N -1.003 6.003 10 C 0.100 3.900 11 C 0.218 3.782 12 C -0.530 4.530 13 H 0.079 0.921 14 C 0.034 3.966 15 N -0.923 5.923 16 Si 0.908 3.092 17 H -0.278 1.278 18 H -0.282 1.282 19 H -0.253 1.253 20 C 0.151 3.849 21 H 0.077 0.923 22 C -0.144 4.144 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.264 0.736 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.808 8.397 -7.867 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.131 0.869 4 C 0.000 4.000 5 N -0.881 5.881 6 S 2.818 3.182 7 O -0.988 6.988 8 O -0.999 6.999 9 N -0.842 5.842 10 C -0.045 4.045 11 C 0.093 3.907 12 C -0.569 4.569 13 H 0.097 0.903 14 C -0.166 4.166 15 N -0.563 5.563 16 Si 0.733 3.267 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.177 1.177 20 C 0.045 3.955 21 H 0.096 0.904 22 C -0.202 4.202 23 H 0.084 0.916 24 H 0.097 0.903 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.112 0.888 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.823 8.678 -7.760 11.670 hybrid contribution 0.359 -1.109 0.983 1.524 sum -0.465 7.569 -6.777 10.170 Atomic orbital electron populations 1.21729 0.92321 1.02580 1.02964 1.23167 0.97068 0.98215 0.93568 0.86940 1.23049 0.88477 0.96883 0.91570 1.60756 1.30300 1.78891 1.18117 1.00883 0.73353 0.72352 0.71617 1.93507 1.76646 1.83465 1.45228 1.93495 1.77026 1.83346 1.46018 1.57514 1.89079 1.24947 1.12708 1.21430 1.02001 0.98117 0.82981 1.19374 0.97118 0.93005 0.81231 1.21779 0.92124 1.35978 1.07026 0.90278 1.25373 0.96674 0.95951 0.98623 1.69965 1.18239 1.42664 1.25424 0.86316 0.81606 0.78382 0.80371 1.20344 1.20739 1.17708 1.22387 0.87054 0.94367 0.91648 0.90432 1.22032 0.99086 0.97242 1.01852 0.91599 0.90338 0.92564 0.89455 0.88844 0.92150 0.90708 0.91019 0.94244 0.95575 0.92679 0.93081 0.90570 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.53 71.98 0.61 -1.86 16 2 C -0.10 -2.22 4.49 -10.13 -0.05 -2.27 16 3 H 0.11 2.16 8.14 -2.39 -0.02 2.15 16 4 C 0.12 3.15 8.17 86.48 0.71 3.86 16 5 N -1.04 -35.45 3.98 -507.37 -2.02 -37.47 16 6 S 2.81 113.78 6.61 -56.49 -0.37 113.41 16 7 O -1.00 -41.20 17.18 -128.00 -2.20 -43.40 16 8 O -1.01 -47.97 16.66 -128.00 -2.13 -50.10 16 9 N -1.00 -40.92 3.23 -543.21 -1.75 -42.67 16 10 C 0.10 3.32 10.31 127.77 1.32 4.64 16 11 C 0.22 10.16 4.48 85.64 0.38 10.55 16 12 C -0.53 -27.14 7.95 25.60 0.20 -26.94 16 13 H 0.08 4.20 5.79 -2.91 -0.02 4.19 16 14 C 0.03 1.80 5.41 84.65 0.46 2.26 16 15 N -0.92 -51.91 13.96 21.44 0.30 -51.61 16 16 Si 0.91 42.21 27.47 68.60 1.88 44.10 16 17 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 18 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.25 -11.17 6.54 99.48 0.65 -10.52 16 20 C 0.15 4.83 5.08 45.09 0.23 5.06 16 21 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 22 C -0.14 -5.19 7.35 71.98 0.53 -4.67 16 23 H 0.07 1.14 8.02 -2.39 -0.02 1.12 16 24 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.11 7.17 -2.39 -0.02 1.10 16 26 H 0.09 2.08 7.59 -2.39 -0.02 2.06 16 27 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 28 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.07 2.47 8.07 -2.38 -0.02 2.45 16 30 H 0.07 2.10 7.79 -2.39 -0.02 2.08 16 31 H 0.04 1.79 7.17 -2.39 -0.02 1.77 16 32 H 0.03 1.30 6.34 -2.39 -0.02 1.29 16 33 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 34 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 35 H 0.08 2.37 7.36 -2.39 -0.02 2.35 16 36 H 0.06 2.62 5.94 -2.38 -0.01 2.61 16 Total: -1.00 -65.37 298.51 -0.89 -66.26 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 1.01 Total: 10.85 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: 4.40 Total: -9.37 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -3.47 Total: -131.75 kcal Atomic # 8 Polarization: -89.17 SS G_CDS: -4.33 Total: -93.50 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.10 kcal Atomic # 16 Polarization: 113.78 SS G_CDS: -0.37 Total: 113.41 kcal Total: -65.37 -0.89 -66.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451614318.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.159 kcal (2) G-P(sol) polarization free energy of solvation -65.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds