Wall clock time and date at job start Mon Mar 30 2020 04:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46572 * 2 1 4 4 H 1.09007 * 112.73871 * 294.91641 * 3 2 1 5 5 C 1.53501 * 113.51951 * 164.12684 * 3 2 1 6 6 C 1.53493 * 83.34199 * 219.14366 * 5 3 2 7 7 N 1.47060 * 87.99015 * 26.06550 * 6 5 3 8 8 S 1.65602 * 136.06112 * 152.84439 * 7 6 5 9 9 O 1.42106 * 106.39752 * 27.58223 * 8 7 6 10 10 O 1.42096 * 106.40432 * 160.50001 * 8 7 6 11 11 N 1.65599 * 107.21807 * 274.04451 * 8 7 6 12 12 C 1.46494 * 120.00109 * 81.30656 * 11 8 7 13 13 C 1.46499 * 119.99842 * 261.30610 * 11 8 7 14 14 C 1.50702 * 109.47203 * 103.40235 * 13 11 8 15 15 H 1.08002 * 119.99702 * 4.42771 * 14 13 11 16 16 C 1.37878 * 120.00326 * 184.42585 * 14 13 11 17 17 N 1.31515 * 120.00015 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99749 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47433 * 89.99739 * 18 16 14 20 20 H 1.48504 * 109.47125 * 210.00010 * 18 16 14 21 21 H 1.48503 * 109.47249 * 329.99584 * 18 16 14 22 22 H 1.09002 * 109.46668 * 157.58985 * 1 2 3 23 23 H 1.09003 * 109.47120 * 277.58331 * 1 2 3 24 24 H 1.08997 * 109.47107 * 37.58847 * 1 2 3 25 25 H 1.09000 * 109.46845 * 240.00212 * 2 1 3 26 26 H 1.08990 * 109.46954 * 119.99794 * 2 1 3 27 27 H 1.09002 * 114.20410 * 332.72708 * 5 3 2 28 28 H 1.09001 * 114.20803 * 105.55428 * 5 3 2 29 29 H 1.09002 * 113.46451 * 271.28279 * 6 5 3 30 30 H 1.08999 * 113.52000 * 140.86050 * 6 5 3 31 31 H 1.09008 * 109.47015 * 90.00042 * 12 11 8 32 32 H 1.09003 * 109.47345 * 210.00037 * 12 11 8 33 33 H 1.09001 * 109.47539 * 330.00098 * 12 11 8 34 34 H 1.08995 * 109.47563 * 223.40382 * 13 11 8 35 35 H 1.09004 * 109.47005 * 343.40963 * 13 11 8 36 36 H 0.97001 * 119.99465 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.7810 1.9810 -0.9118 5 6 3.5205 1.5689 0.3850 6 6 3.0340 2.8155 1.1370 7 7 1.7110 2.1801 1.2291 8 16 0.4195 2.2593 2.2626 9 8 0.4473 3.5571 2.8407 10 8 -0.6983 1.7507 1.5477 11 7 0.7115 1.1921 3.4948 12 6 1.5824 1.5786 4.6075 13 6 0.0988 -0.1384 3.4720 14 6 1.1298 -1.1593 3.0645 15 1 2.1564 -0.8595 2.9139 16 6 0.7625 -2.4759 2.8838 17 7 1.6623 -3.3668 2.5287 18 14 -1.0133 -2.9941 3.1436 19 1 -1.7573 -2.8702 1.8645 20 1 -1.0547 -4.4048 3.6057 21 1 -1.6395 -2.1194 4.1674 22 1 -0.3633 -0.9501 -0.3918 23 1 -0.3633 0.1356 1.0187 24 1 -0.3633 0.8143 -0.6268 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8839 0.7703 1.0317 28 1 4.1836 1.7830 -0.4533 29 1 3.0400 3.7196 0.5281 30 1 3.5165 2.9558 2.1042 31 1 0.9846 2.0405 5.3934 32 1 2.0811 0.6936 5.0030 33 1 2.3296 2.2893 4.2543 34 1 -0.2800 -0.3811 4.4648 35 1 -0.7238 -0.1474 2.7569 36 1 1.4039 -4.2932 2.4020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490606977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:26 Heat of formation + Delta-G solvation = -25.880576 kcal Electronic energy + Delta-G solvation = -20020.203011 eV Core-core repulsion = 17054.329541 eV Total energy + Delta-G solvation = -2965.873470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.22083 -36.84154 -35.67840 -35.29059 -32.52428 -31.88580 -28.38188 -28.29281 -25.34367 -25.18469 -22.01804 -21.34369 -20.59088 -18.19739 -17.46131 -16.85091 -16.77589 -15.82644 -14.94186 -14.51998 -14.13886 -13.81071 -13.37305 -13.17630 -12.78130 -12.57512 -12.43429 -12.20593 -12.15087 -11.74636 -11.67699 -11.61293 -11.33096 -11.24378 -10.80208 -10.55846 -10.44724 -10.33868 -10.20054 -9.75410 -9.54825 -9.36619 -8.71697 -8.59965 -8.08662 -6.16973 -4.15341 1.14780 3.25658 3.32374 3.37054 3.42411 4.07128 4.34913 4.61031 4.86423 5.06941 5.16379 5.28471 5.49711 5.60701 5.65333 5.74613 5.96948 6.01506 6.03330 6.19253 6.30201 6.41479 6.46060 6.49921 6.65016 6.74380 6.88590 6.98394 7.08139 7.34052 7.39537 7.53038 7.61489 8.40678 8.85395 9.44475 10.94848 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.010371 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.226433 B = 2699.160302 C = 3082.308936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.150 4.150 3 C 0.164 3.836 4 H 0.080 0.920 5 C -0.150 4.150 6 C 0.127 3.873 7 N -1.042 6.042 8 S 2.800 3.200 9 O -0.998 6.998 10 O -0.965 6.965 11 N -0.988 5.988 12 C 0.107 3.893 13 C 0.211 3.789 14 C -0.531 4.531 15 H 0.082 0.918 16 C 0.081 3.919 17 N -0.891 5.891 18 Si 0.861 3.139 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.265 1.265 22 H 0.038 0.962 23 H 0.104 0.896 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.110 0.890 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 8.759 -2.784 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.188 4.188 3 C 0.058 3.942 4 H 0.098 0.902 5 C -0.189 4.189 6 C 0.001 3.999 7 N -0.882 5.882 8 S 2.811 3.189 9 O -0.982 6.982 10 O -0.950 6.950 11 N -0.829 5.829 12 C -0.039 4.039 13 C 0.087 3.913 14 C -0.570 4.570 15 H 0.100 0.900 16 C -0.123 4.123 17 N -0.529 5.529 18 Si 0.688 3.312 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.189 1.189 22 H 0.057 0.943 23 H 0.122 0.878 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.129 0.871 27 H 0.117 0.883 28 H 0.095 0.905 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.187 9.151 -2.730 9.797 hybrid contribution -0.589 -0.714 0.107 0.932 sum 1.598 8.437 -2.623 8.978 Atomic orbital electron populations 1.22366 0.94648 0.99382 1.06011 1.22109 0.97633 0.94109 1.04903 1.22121 0.92602 0.93358 0.86093 0.90243 1.23605 0.96217 0.98475 1.00631 1.22277 0.81323 0.95956 1.00330 1.60549 1.32083 1.56633 1.38901 1.01155 0.72953 0.72470 0.72302 1.93530 1.87120 1.39330 1.78259 1.93593 1.49935 1.79383 1.72079 1.57449 1.61283 1.29369 1.34814 1.21218 0.93012 1.00401 0.89280 1.19693 0.94490 0.78906 0.98166 1.21293 0.96639 0.91791 1.47275 0.89965 1.24782 0.96809 0.96454 0.94239 1.69875 1.33511 1.02761 1.46726 0.87076 0.86255 0.78258 0.79640 1.19559 1.21109 1.18928 0.94273 0.87835 0.94210 0.91992 0.87148 0.88259 0.90548 0.90665 0.91192 0.93678 0.90280 0.93152 0.95065 0.93467 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 8.25 37.16 0.31 -3.12 16 2 C -0.15 -2.78 5.95 -26.73 -0.16 -2.94 16 3 C 0.16 2.56 3.96 -72.40 -0.29 2.27 16 4 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 5 C -0.15 -1.92 8.03 -26.22 -0.21 -2.13 16 6 C 0.13 1.67 8.72 -8.52 -0.07 1.60 16 7 N -1.04 -17.73 4.12 -117.91 -0.49 -18.22 16 8 S 2.80 55.91 6.21 -107.50 -0.67 55.24 16 9 O -1.00 -21.15 17.53 -57.17 -1.00 -22.15 16 10 O -0.97 -21.21 12.00 -57.17 -0.69 -21.90 16 11 N -0.99 -19.95 3.26 -123.05 -0.40 -20.35 16 12 C 0.11 1.83 10.26 59.84 0.61 2.44 16 13 C 0.21 4.82 4.03 -5.19 -0.02 4.80 16 14 C -0.53 -13.35 7.81 -34.44 -0.27 -13.62 16 15 H 0.08 2.20 7.51 -52.49 -0.39 1.80 16 16 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.89 -24.95 13.96 55.43 0.77 -24.18 16 18 Si 0.86 20.47 27.38 -169.99 -4.65 15.82 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.26 -6.08 6.67 56.52 0.38 -5.70 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.10 2.36 2.58 -53.13 -0.14 2.23 16 24 H 0.04 0.76 7.67 -51.93 -0.40 0.36 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.11 2.40 5.46 -51.93 -0.28 2.12 16 27 H 0.10 1.42 8.09 -51.93 -0.42 1.00 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 32 H 0.08 1.35 7.95 -51.93 -0.41 0.93 16 33 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 34 H 0.03 0.71 7.51 -51.93 -0.39 0.32 16 35 H 0.05 1.13 4.60 -51.93 -0.24 0.89 16 36 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -30.09 292.49 -8.12 -38.21 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.21 Total: 1.77 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -0.20 Total: -8.66 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.11 Total: -62.74 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -1.69 Total: -44.05 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.65 Total: 15.82 kcal Atomic # 16 Polarization: 55.91 SS G_CDS: -0.67 Total: 55.24 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.09 -8.12 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490606977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.331 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds