Wall clock time and date at job start Mon Mar 30 2020 04:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46572 * 2 1 4 4 H 1.09007 * 112.73871 * 294.91641 * 3 2 1 5 5 C 1.53501 * 113.51951 * 164.12684 * 3 2 1 6 6 C 1.53493 * 83.34199 * 219.14366 * 5 3 2 7 7 N 1.47060 * 87.99015 * 26.06550 * 6 5 3 8 8 S 1.65602 * 136.06112 * 152.84439 * 7 6 5 9 9 O 1.42106 * 106.39752 * 27.58223 * 8 7 6 10 10 O 1.42096 * 106.40432 * 160.50001 * 8 7 6 11 11 N 1.65599 * 107.21807 * 274.04451 * 8 7 6 12 12 C 1.46494 * 120.00109 * 81.30656 * 11 8 7 13 13 C 1.46499 * 119.99842 * 261.30610 * 11 8 7 14 14 C 1.50702 * 109.47203 * 103.40235 * 13 11 8 15 15 H 1.08002 * 119.99702 * 4.42771 * 14 13 11 16 16 C 1.37878 * 120.00326 * 184.42585 * 14 13 11 17 17 N 1.31515 * 120.00015 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99749 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47433 * 89.99739 * 18 16 14 20 20 H 1.48504 * 109.47125 * 210.00010 * 18 16 14 21 21 H 1.48503 * 109.47249 * 329.99584 * 18 16 14 22 22 H 1.09002 * 109.46668 * 157.58985 * 1 2 3 23 23 H 1.09003 * 109.47120 * 277.58331 * 1 2 3 24 24 H 1.08997 * 109.47107 * 37.58847 * 1 2 3 25 25 H 1.09000 * 109.46845 * 240.00212 * 2 1 3 26 26 H 1.08990 * 109.46954 * 119.99794 * 2 1 3 27 27 H 1.09002 * 114.20410 * 332.72708 * 5 3 2 28 28 H 1.09001 * 114.20803 * 105.55428 * 5 3 2 29 29 H 1.09002 * 113.46451 * 271.28279 * 6 5 3 30 30 H 1.08999 * 113.52000 * 140.86050 * 6 5 3 31 31 H 1.09008 * 109.47015 * 90.00042 * 12 11 8 32 32 H 1.09003 * 109.47345 * 210.00037 * 12 11 8 33 33 H 1.09001 * 109.47539 * 330.00098 * 12 11 8 34 34 H 1.08995 * 109.47563 * 223.40382 * 13 11 8 35 35 H 1.09004 * 109.47005 * 343.40963 * 13 11 8 36 36 H 0.97001 * 119.99465 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.7810 1.9810 -0.9118 5 6 3.5205 1.5689 0.3850 6 6 3.0340 2.8155 1.1370 7 7 1.7110 2.1801 1.2291 8 16 0.4195 2.2593 2.2626 9 8 0.4473 3.5571 2.8407 10 8 -0.6983 1.7507 1.5477 11 7 0.7115 1.1921 3.4948 12 6 1.5824 1.5786 4.6075 13 6 0.0988 -0.1384 3.4720 14 6 1.1298 -1.1593 3.0645 15 1 2.1564 -0.8595 2.9139 16 6 0.7625 -2.4759 2.8838 17 7 1.6623 -3.3668 2.5287 18 14 -1.0133 -2.9941 3.1436 19 1 -1.7573 -2.8702 1.8645 20 1 -1.0547 -4.4048 3.6057 21 1 -1.6395 -2.1194 4.1674 22 1 -0.3633 -0.9501 -0.3918 23 1 -0.3633 0.1356 1.0187 24 1 -0.3633 0.8143 -0.6268 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.8839 0.7703 1.0317 28 1 4.1836 1.7830 -0.4533 29 1 3.0400 3.7196 0.5281 30 1 3.5165 2.9558 2.1042 31 1 0.9846 2.0405 5.3934 32 1 2.0811 0.6936 5.0030 33 1 2.3296 2.2893 4.2543 34 1 -0.2800 -0.3811 4.4648 35 1 -0.7238 -0.1474 2.7569 36 1 1.4039 -4.2932 2.4020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490606977.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:26 Heat of formation + Delta-G solvation = -47.600878 kcal Electronic energy + Delta-G solvation = -20021.144874 eV Core-core repulsion = 17054.329541 eV Total energy + Delta-G solvation = -2966.815333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.42117 -38.44872 -37.32942 -36.90657 -34.45927 -33.40732 -30.17765 -29.53880 -26.85033 -26.58441 -23.80868 -22.63651 -21.96039 -19.68639 -19.02941 -18.73063 -18.26222 -17.39458 -16.39282 -16.12728 -15.64804 -15.37848 -14.87526 -14.66974 -14.45053 -14.20373 -14.07672 -13.72603 -13.41697 -13.26559 -13.23153 -13.06866 -12.98097 -12.87735 -12.44195 -12.24436 -12.08427 -11.89930 -11.66946 -11.47167 -11.11760 -10.96128 -10.65444 -9.95777 -9.71462 -8.22541 -6.21689 -0.36069 1.34925 1.40527 1.44971 1.97160 2.37078 2.55540 3.12833 3.24262 3.71609 3.86317 4.02384 4.16134 4.36508 4.56910 4.59071 4.62195 4.69687 4.76963 4.85220 4.89838 4.98504 5.04238 5.09143 5.11234 5.29736 5.33294 5.43836 5.51625 5.68376 5.78745 5.85745 5.96736 6.38104 6.79343 7.39648 8.91723 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021663 B = 0.010371 C = 0.009082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.226433 B = 2699.160302 C = 3082.308936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.147 4.147 3 C 0.159 3.841 4 H 0.108 0.892 5 C -0.133 4.133 6 C 0.124 3.876 7 N -1.052 6.052 8 S 2.808 3.192 9 O -1.012 7.012 10 O -0.991 6.991 11 N -0.996 5.996 12 C 0.100 3.900 13 C 0.217 3.783 14 C -0.510 4.510 15 H 0.060 0.940 16 C 0.037 3.963 17 N -0.929 5.929 18 Si 0.901 3.099 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.251 1.251 22 H 0.027 0.973 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.115 0.885 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.039 0.961 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.761 10.290 -3.267 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.185 4.185 3 C 0.053 3.947 4 H 0.125 0.875 5 C -0.173 4.173 6 C 0.000 4.000 7 N -0.895 5.895 8 S 2.820 3.180 9 O -0.996 6.996 10 O -0.975 6.975 11 N -0.836 5.836 12 C -0.045 4.045 13 C 0.093 3.907 14 C -0.549 4.549 15 H 0.078 0.922 16 C -0.163 4.163 17 N -0.569 5.569 18 Si 0.727 3.273 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.174 1.174 22 H 0.046 0.954 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.134 0.866 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.797 10.708 -3.184 11.517 hybrid contribution -0.704 -1.131 0.212 1.349 sum 2.094 9.577 -2.972 10.244 Atomic orbital electron populations 1.22348 0.96265 0.99105 1.04854 1.22009 0.96144 0.96479 1.03865 1.22385 0.94384 0.91357 0.86540 0.87472 1.23495 0.94799 0.97627 1.01369 1.22637 0.78861 0.96979 1.01541 1.60422 1.32797 1.57427 1.38875 1.00683 0.73101 0.71980 0.72249 1.93506 1.87552 1.39785 1.78796 1.93559 1.51770 1.79680 1.72525 1.57432 1.61894 1.28056 1.36246 1.21422 0.93348 1.00799 0.88970 1.19452 0.93673 0.79755 0.97864 1.21338 0.96088 0.92028 1.45419 0.92163 1.25336 0.99547 0.96784 0.94632 1.69973 1.35068 1.03027 1.48835 0.86409 0.82956 0.78256 0.79712 1.19924 1.20839 1.17434 0.95388 0.89800 0.93215 0.90522 0.90644 0.90235 0.86633 0.87675 0.90313 0.92138 0.90722 0.91140 0.94684 0.94313 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.90 8.25 71.98 0.59 -6.30 16 2 C -0.15 -5.35 5.95 30.60 0.18 -5.17 16 3 C 0.16 4.55 3.96 41.79 0.17 4.71 16 4 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 5 C -0.13 -2.99 8.03 30.93 0.25 -2.74 16 6 C 0.12 2.83 8.72 83.17 0.73 3.55 16 7 N -1.05 -33.59 4.12 -526.96 -2.17 -35.77 16 8 S 2.81 108.99 6.21 -56.49 -0.35 108.64 16 9 O -1.01 -41.24 17.53 -128.00 -2.24 -43.49 16 10 O -0.99 -43.16 12.00 -128.00 -1.54 -44.69 16 11 N -1.00 -39.47 3.26 -543.22 -1.77 -41.23 16 12 C 0.10 3.27 10.26 127.77 1.31 4.58 16 13 C 0.22 9.88 4.03 85.63 0.34 10.23 16 14 C -0.51 -25.87 7.81 25.60 0.20 -25.67 16 15 H 0.06 3.29 7.51 -2.91 -0.02 3.27 16 16 C 0.04 1.96 5.47 84.65 0.46 2.43 16 17 N -0.93 -52.99 13.96 21.45 0.30 -52.69 16 18 Si 0.90 42.08 27.38 68.60 1.88 43.96 16 19 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.25 -11.02 6.67 99.48 0.66 -10.36 16 22 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.08 3.85 2.58 -21.48 -0.06 3.80 16 24 H 0.05 1.88 7.67 -2.39 -0.02 1.86 16 25 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.08 3.32 5.46 -2.39 -0.01 3.31 16 27 H 0.08 2.14 8.09 -2.39 -0.02 2.12 16 28 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.07 2.48 7.95 -2.39 -0.02 2.46 16 33 H 0.07 1.99 8.00 -2.39 -0.02 1.97 16 34 H 0.04 1.57 7.51 -2.39 -0.02 1.55 16 35 H 0.04 1.86 4.60 -2.39 -0.01 1.85 16 36 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -64.90 292.49 -0.68 -65.59 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.98 Total: 14.07 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.23 Total: -14.38 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -3.64 Total: -129.69 kcal Atomic # 8 Polarization: -84.40 SS G_CDS: -3.78 Total: -88.18 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.96 kcal Atomic # 16 Polarization: 108.99 SS G_CDS: -0.35 Total: 108.64 kcal Total: -64.90 -0.68 -65.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490606977.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.985 kcal (2) G-P(sol) polarization free energy of solvation -64.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds