Wall clock time and date at job start Mon Mar 30 2020 04:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 C 1.53000 * 109.46897 * 2 1 4 4 H 1.09003 * 112.77890 * 62.66112 * 3 2 1 5 5 C 1.53755 * 113.55091 * 193.51392 * 3 2 1 6 6 C 1.53493 * 83.25856 * 140.98799 * 5 3 2 7 7 N 1.47059 * 113.46941 * 291.87605 * 3 2 1 8 8 S 1.65607 * 136.05690 * 38.13869 * 7 3 2 9 9 O 1.42105 * 106.40295 * 156.12051 * 8 7 3 10 10 O 1.42095 * 106.40100 * 23.19703 * 8 7 3 11 11 N 1.65606 * 107.21433 * 269.65512 * 8 7 3 12 12 C 1.46494 * 120.00221 * 277.39524 * 11 8 7 13 13 C 1.46501 * 119.99479 * 97.40448 * 11 8 7 14 14 C 1.50704 * 109.46668 * 252.09595 * 13 11 8 15 15 H 1.07993 * 120.00300 * 2.86008 * 14 13 11 16 16 C 1.37878 * 119.99602 * 182.58095 * 14 13 11 17 17 N 1.31512 * 119.99931 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 120.00309 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.46937 * 89.99983 * 18 16 14 20 20 H 1.48494 * 109.47301 * 210.00002 * 18 16 14 21 21 H 1.48493 * 109.47149 * 330.00176 * 18 16 14 22 22 H 1.08999 * 109.47155 * 78.88895 * 1 2 3 23 23 H 1.09000 * 109.46801 * 198.89482 * 1 2 3 24 24 H 1.08999 * 109.46785 * 318.88745 * 1 2 3 25 25 H 1.08998 * 109.46747 * 239.99996 * 2 1 3 26 26 H 1.08994 * 109.46910 * 119.99938 * 2 1 3 27 27 H 1.09004 * 114.39463 * 27.42519 * 5 3 2 28 28 H 1.08994 * 114.08883 * 254.53448 * 5 3 2 29 29 H 1.09003 * 113.46964 * 218.98574 * 6 5 3 30 30 H 1.08996 * 113.51990 * 88.55472 * 6 5 3 31 31 H 1.08999 * 109.47366 * 270.00819 * 12 11 8 32 32 H 1.08998 * 109.47056 * 30.00815 * 12 11 8 33 33 H 1.09002 * 109.47003 * 150.00178 * 12 11 8 34 34 H 1.09003 * 109.47233 * 132.10077 * 13 11 8 35 35 H 1.08997 * 109.47380 * 12.09544 * 13 11 8 36 36 H 0.97002 * 120.00674 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.7456 1.9943 0.8928 5 6 3.5369 1.5650 -0.3294 6 6 3.0781 2.8024 -1.1131 7 7 1.7614 2.1622 -1.2518 8 16 0.5117 2.2283 -2.3364 9 8 0.6166 3.4839 -2.9935 10 8 -0.6517 1.8136 -1.6338 11 7 0.7999 1.0728 -3.4872 12 6 1.7036 1.3604 -4.6038 13 6 0.1509 -0.2369 -3.3887 14 6 1.1710 -1.2747 -2.9969 15 1 2.1897 -0.9803 -2.7923 16 6 0.8024 -2.5993 -2.8942 17 7 1.6924 -3.5049 -2.5518 18 14 -0.9613 -3.1076 -3.2412 19 1 -1.1073 -3.4363 -4.6820 20 1 -1.3028 -4.2998 -2.4244 21 1 -1.8760 -1.9907 -2.8933 22 1 -0.3633 0.1980 -1.0084 23 1 -0.3633 -0.9723 0.3328 24 1 -0.3633 0.7743 0.6757 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.9280 0.7608 -0.9527 28 1 4.1652 1.7894 0.5325 29 1 3.5992 2.9333 -2.0616 30 1 3.0571 3.7132 -0.5148 31 1 1.1348 1.7832 -5.4320 32 1 2.4624 2.0739 -4.2825 33 1 2.1860 0.4382 -4.9276 34 1 -0.2837 -0.5005 -4.3530 35 1 -0.6350 -0.1971 -2.6346 36 1 1.4332 -4.4369 -2.4798 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490606980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:29 Heat of formation + Delta-G solvation = -49.189294 kcal Electronic energy + Delta-G solvation = -19976.640218 eV Core-core repulsion = 17009.756006 eV Total energy + Delta-G solvation = -2966.884212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.41134 -38.45584 -37.34901 -36.91827 -34.45183 -33.44119 -30.16208 -29.53434 -26.88419 -26.59416 -23.78344 -22.63282 -21.97533 -19.70515 -19.03288 -18.74475 -18.27112 -17.40035 -16.38738 -16.11462 -15.65404 -15.41260 -14.88125 -14.66602 -14.36035 -14.27271 -14.07022 -13.68911 -13.41582 -13.29542 -13.24401 -13.11117 -12.96412 -12.88729 -12.49830 -12.26540 -12.02771 -11.91541 -11.68062 -11.46458 -11.15012 -10.98966 -10.65844 -9.96734 -9.72949 -8.22594 -6.21926 -0.37743 1.34131 1.40001 1.47758 1.96227 2.37169 2.54000 3.12091 3.21929 3.70341 3.85862 4.02662 4.15927 4.36620 4.56603 4.58482 4.62927 4.70028 4.77426 4.85356 4.88196 5.00909 5.03018 5.08196 5.09941 5.29988 5.33941 5.43195 5.50985 5.67386 5.77728 5.85047 5.94330 6.37789 6.79177 7.39210 8.91660 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.010095 C = 0.008887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.673017 B = 2772.869398 C = 3150.039065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.149 4.149 3 C 0.158 3.842 4 H 0.107 0.893 5 C -0.133 4.133 6 C 0.124 3.876 7 N -1.053 6.053 8 S 2.810 3.190 9 O -1.011 7.011 10 O -0.993 6.993 11 N -0.996 5.996 12 C 0.101 3.899 13 C 0.215 3.785 14 C -0.508 4.508 15 H 0.061 0.939 16 C 0.034 3.966 17 N -0.931 5.931 18 Si 0.905 3.095 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.256 1.256 22 H 0.082 0.918 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.045 0.955 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.678 10.387 3.570 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.187 4.187 3 C 0.053 3.947 4 H 0.125 0.875 5 C -0.173 4.173 6 C 0.000 4.000 7 N -0.896 5.896 8 S 2.822 3.178 9 O -0.995 6.995 10 O -0.978 6.978 11 N -0.836 5.836 12 C -0.045 4.045 13 C 0.090 3.910 14 C -0.547 4.547 15 H 0.079 0.921 16 C -0.166 4.166 17 N -0.571 5.571 18 Si 0.730 3.270 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.180 1.180 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.068 0.932 25 H 0.095 0.905 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.134 0.866 29 H 0.097 0.903 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.742 10.831 3.415 11.683 hybrid contribution -0.691 -1.140 -0.281 1.362 sum 2.052 9.692 3.134 10.390 Atomic orbital electron populations 1.22341 0.96403 0.99559 1.04722 1.22042 0.96132 0.96443 1.04097 1.22446 0.94889 0.91675 0.85739 0.87485 1.23536 0.94601 0.97698 1.01425 1.22642 0.79247 0.96997 1.01152 1.60454 1.34111 1.58111 1.36952 1.00637 0.72940 0.72034 0.72216 1.93507 1.87549 1.42490 1.75948 1.93519 1.48684 1.82270 1.73299 1.57427 1.59410 1.28218 1.38548 1.21405 0.92670 1.01763 0.88654 1.19511 0.93473 0.80427 0.97594 1.21326 0.96968 0.91019 1.45389 0.92065 1.25372 0.99623 0.96757 0.94837 1.69973 1.35414 1.02049 1.49660 0.86343 0.82857 0.78729 0.79023 1.19128 1.21068 1.18045 0.89987 0.94892 0.93193 0.90470 0.90365 0.90127 0.86634 0.90315 0.87672 0.92171 0.91144 0.90766 0.95134 0.93731 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.92 8.48 71.99 0.61 -6.31 16 2 C -0.15 -5.33 5.92 30.60 0.18 -5.15 16 3 C 0.16 4.45 3.98 41.88 0.17 4.62 16 4 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 5 C -0.13 -2.92 8.04 31.01 0.25 -2.67 16 6 C 0.12 2.79 8.72 83.17 0.73 3.51 16 7 N -1.05 -33.32 4.12 -526.51 -2.17 -35.48 16 8 S 2.81 108.63 6.17 -56.49 -0.35 108.28 16 9 O -1.01 -41.01 17.48 -128.00 -2.24 -43.25 16 10 O -0.99 -43.10 12.65 -128.00 -1.62 -44.72 16 11 N -1.00 -39.58 3.29 -543.23 -1.78 -41.36 16 12 C 0.10 3.34 10.22 127.77 1.31 4.65 16 13 C 0.21 9.78 4.16 85.63 0.36 10.14 16 14 C -0.51 -25.77 7.67 25.60 0.20 -25.57 16 15 H 0.06 3.34 7.29 -2.91 -0.02 3.32 16 16 C 0.03 1.80 5.47 84.66 0.46 2.26 16 17 N -0.93 -53.17 13.96 21.45 0.30 -52.87 16 18 Si 0.91 41.97 27.42 68.60 1.88 43.85 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.26 -11.61 6.62 99.48 0.66 -10.96 16 22 H 0.08 3.68 2.17 -12.34 -0.03 3.66 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 1.82 7.97 -2.39 -0.02 1.80 16 25 H 0.08 3.34 5.21 -2.39 -0.01 3.33 16 26 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.08 2.10 8.13 -2.39 -0.02 2.08 16 28 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.08 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.07 2.02 7.97 -2.39 -0.02 2.00 16 33 H 0.07 2.54 7.78 -2.39 -0.02 2.53 16 34 H 0.03 1.36 7.43 -2.39 -0.02 1.35 16 35 H 0.04 2.15 4.31 -2.39 -0.01 2.14 16 36 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -64.99 292.13 -0.72 -65.71 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.00 Total: 14.37 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.25 Total: -14.52 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -3.65 Total: -129.72 kcal Atomic # 8 Polarization: -84.12 SS G_CDS: -3.86 Total: -87.97 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.85 kcal Atomic # 16 Polarization: 108.63 SS G_CDS: -0.35 Total: 108.28 kcal Total: -64.99 -0.72 -65.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490606980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.517 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds