Wall clock time and date at job start Mon Mar 30 2020 04:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 112.78135 * 2 1 4 4 C 1.53751 * 113.46446 * 229.09884 * 2 1 3 5 5 C 1.53500 * 83.26029 * 271.50190 * 4 2 1 6 6 H 1.09001 * 113.46455 * 218.98802 * 5 4 2 7 7 C 1.52998 * 113.46752 * 88.54116 * 5 4 2 8 8 N 1.47068 * 113.47025 * 130.78083 * 2 1 3 9 9 S 1.65593 * 136.05814 * 267.69867 * 8 2 1 10 10 O 1.42098 * 106.40537 * 156.08889 * 9 8 2 11 11 O 1.42100 * 106.40661 * 23.16567 * 9 8 2 12 12 N 1.65607 * 107.21893 * 269.62797 * 9 8 2 13 13 C 1.46504 * 120.00005 * 270.00143 * 12 9 8 14 14 C 1.46499 * 120.00284 * 89.99483 * 12 9 8 15 15 C 1.50703 * 109.46776 * 95.00361 * 14 12 9 16 16 H 1.07999 * 120.00181 * 0.02562 * 15 14 12 17 17 C 1.37871 * 119.99771 * 180.02562 * 15 14 12 18 18 N 1.31517 * 120.00376 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99764 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47414 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46990 * 119.99909 * 19 17 15 22 22 H 1.48504 * 109.47098 * 239.99658 * 19 17 15 23 23 H 1.09007 * 109.46556 * 262.60573 * 1 2 3 24 24 H 1.08994 * 109.47166 * 22.60606 * 1 2 3 25 25 H 1.09002 * 109.47205 * 142.60896 * 1 2 3 26 26 H 1.09004 * 114.39958 * 157.94012 * 4 2 1 27 27 H 1.08998 * 114.26798 * 25.05561 * 4 2 1 28 28 H 1.08996 * 109.47297 * 295.99384 * 7 5 4 29 29 H 1.09006 * 109.46810 * 55.99423 * 7 5 4 30 30 H 1.08997 * 109.47047 * 175.98898 * 7 5 4 31 31 H 1.09004 * 109.47150 * 270.00006 * 13 12 9 32 32 H 1.09005 * 109.46624 * 29.99534 * 13 12 9 33 33 H 1.08990 * 109.47233 * 149.99147 * 13 12 9 34 34 H 1.09000 * 109.46884 * 335.00840 * 14 12 9 35 35 H 1.08995 * 109.47310 * 215.00168 * 14 12 9 36 36 H 0.97003 * 120.00102 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0049 0.0000 4 6 2.1422 -0.9234 -1.0660 5 6 2.0338 -1.9775 0.0446 6 1 2.8852 -2.6571 0.0826 7 6 0.6903 -2.7092 0.0612 8 7 2.1157 -0.8811 1.0215 9 16 2.6329 -0.7141 2.5857 10 8 2.5633 -2.0067 3.1716 11 8 1.9537 0.4165 3.1144 12 7 4.2384 -0.3115 2.5308 13 6 5.2580 -1.3635 2.5356 14 6 4.6391 1.0966 2.4774 15 6 4.9332 1.5883 3.8713 16 1 4.8322 0.9188 4.7127 17 6 5.3313 2.8929 4.0723 18 7 5.4549 3.7081 3.0477 19 14 5.6951 3.5027 5.8001 20 1 5.4829 2.3982 6.7698 21 1 7.1050 3.9630 5.8759 22 1 4.7875 4.6314 6.1281 23 1 -0.3633 -0.1323 1.0192 24 1 -0.3633 0.9486 -0.3950 25 1 -0.3634 -0.8165 -0.6241 26 1 3.1654 -0.6722 -1.3454 27 1 1.4949 -1.1091 -1.9231 28 1 -0.1068 -2.0003 0.2852 29 1 0.5108 -3.1614 -0.9143 30 1 0.7097 -3.4872 0.8243 31 1 5.5381 -1.5934 3.5636 32 1 4.8584 -2.2588 2.0591 33 1 6.1357 -1.0213 1.9876 34 1 3.8314 1.6881 2.0463 35 1 5.5322 1.1970 1.8607 36 1 5.7346 4.6261 3.1892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530479129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:32 Heat of formation + Delta-G solvation = -30.626220 kcal Electronic energy + Delta-G solvation = -19192.613387 eV Core-core repulsion = 16226.534130 eV Total energy + Delta-G solvation = -2966.079256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.06217 -36.51937 -35.44954 -35.08778 -32.42096 -30.06330 -29.80963 -27.76265 -27.53717 -25.03554 -22.28899 -21.92311 -20.57193 -17.97935 -17.39886 -16.66563 -16.37501 -15.62851 -15.19752 -14.70478 -14.15949 -13.82770 -13.41035 -13.27870 -13.09759 -12.51808 -12.38493 -12.30398 -12.10086 -12.06961 -11.59978 -11.42266 -11.38798 -11.26185 -11.14815 -11.08628 -10.70528 -10.66455 -10.47822 -9.99905 -9.86483 -9.73341 -8.91618 -8.43579 -8.03287 -6.05607 -4.09267 1.17514 3.31755 3.39090 3.44780 3.52074 4.12704 4.37412 4.45910 4.66680 4.78936 5.08375 5.20710 5.26979 5.29242 5.34704 5.53051 5.58958 5.68344 5.73032 5.88341 5.93689 5.97190 6.06813 6.21018 6.27422 6.33723 6.34875 6.56616 6.85581 7.22351 7.41259 7.62709 7.92236 8.21786 8.93287 9.55867 11.03101 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.006599 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.408658 B = 4242.342083 C = 4458.275507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.151 3.849 3 H 0.089 0.911 4 C -0.145 4.145 5 C 0.152 3.848 6 H 0.080 0.920 7 C -0.180 4.180 8 N -1.046 6.046 9 S 2.799 3.201 10 O -0.995 6.995 11 O -0.960 6.960 12 N -0.995 5.995 13 C 0.110 3.890 14 C 0.258 3.742 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.061 3.939 18 N -0.897 5.897 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.528 -10.231 -10.681 16.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.045 3.955 3 H 0.107 0.893 4 C -0.184 4.184 5 C 0.045 3.955 6 H 0.098 0.902 7 C -0.238 4.238 8 N -0.885 5.885 9 S 2.809 3.191 10 O -0.979 6.979 11 O -0.944 6.944 12 N -0.838 5.838 13 C -0.037 4.037 14 C 0.136 3.864 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.536 5.536 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.092 0.908 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.896 -10.127 -9.674 15.611 hybrid contribution 0.583 0.522 0.782 1.106 sum -6.313 -9.605 -8.892 14.532 Atomic orbital electron populations 1.22380 0.94560 1.02437 1.02935 1.21840 0.93519 0.95505 0.84667 0.89315 1.23676 1.02242 0.96625 0.95888 1.21748 0.97914 0.89896 0.85910 0.90179 1.22528 0.97558 1.01360 1.02361 1.61116 1.76671 1.19946 1.30718 1.01407 0.73231 0.72710 0.71712 1.93519 1.87318 1.42426 1.74639 1.93613 1.73027 1.52212 1.75563 1.57716 1.22504 1.15022 1.88547 1.21186 0.92313 0.88694 1.01469 1.19056 0.96503 0.73158 0.97666 1.21535 1.45510 0.96352 0.93266 0.92188 1.24933 0.95298 0.96472 0.97360 1.69929 1.47644 1.06060 1.29965 0.86450 0.77736 0.78922 0.84396 1.19652 1.20929 1.20767 0.91546 0.91529 0.90790 0.88810 0.90084 0.89875 0.91241 0.92030 0.93177 0.93177 0.91530 0.94593 0.94794 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 8.30 37.16 0.31 -1.56 16 2 C 0.15 2.04 5.08 -72.26 -0.37 1.67 16 3 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 4 C -0.15 -1.50 7.66 -26.08 -0.20 -1.70 16 5 C 0.15 1.86 5.06 -72.39 -0.37 1.49 16 6 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.18 -1.87 9.12 37.16 0.34 -1.53 16 8 N -1.05 -16.95 3.92 -110.49 -0.43 -17.39 16 9 S 2.80 59.45 6.60 -107.50 -0.71 58.74 16 10 O -0.99 -22.12 17.21 -57.17 -0.98 -23.11 16 11 O -0.96 -24.19 17.11 -57.17 -0.98 -25.17 16 12 N -1.00 -21.73 3.23 -123.05 -0.40 -22.13 16 13 C 0.11 1.99 10.33 59.85 0.62 2.61 16 14 C 0.26 6.66 5.12 -5.19 -0.03 6.63 16 15 C -0.53 -15.24 9.38 -34.44 -0.32 -15.56 16 16 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 18 N -0.90 -26.49 13.29 55.43 0.74 -25.76 16 19 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H 0.07 0.87 7.98 -51.92 -0.41 0.46 16 24 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.65 5.50 -51.93 -0.29 0.37 16 26 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.62 7.96 -51.93 -0.41 0.21 16 28 H 0.08 0.87 4.23 -51.93 -0.22 0.65 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 33 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 34 H 0.04 0.98 7.61 -51.93 -0.40 0.59 16 35 H 0.03 0.88 7.96 -51.93 -0.41 0.47 16 36 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 307.80 15.07 4.64 4.64 Total: -1.00 -34.59 307.80 -8.72 -43.32 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -5.46 Total: -4.12 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -0.11 Total: -6.26 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -0.09 Total: -65.27 kcal Atomic # 8 Polarization: -46.31 SS G_CDS: -1.96 Total: -48.28 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 59.45 SS G_CDS: -0.71 Total: 58.74 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.59 -8.72 -43.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530479129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.692 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds