Wall clock time and date at job start Mon Mar 30 2020 04:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 112.78135 * 2 1 4 4 C 1.53751 * 113.46446 * 229.09884 * 2 1 3 5 5 C 1.53500 * 83.26029 * 271.50190 * 4 2 1 6 6 H 1.09001 * 113.46455 * 218.98802 * 5 4 2 7 7 C 1.52998 * 113.46752 * 88.54116 * 5 4 2 8 8 N 1.47068 * 113.47025 * 130.78083 * 2 1 3 9 9 S 1.65593 * 136.05814 * 267.69867 * 8 2 1 10 10 O 1.42098 * 106.40537 * 156.08889 * 9 8 2 11 11 O 1.42100 * 106.40661 * 23.16567 * 9 8 2 12 12 N 1.65607 * 107.21893 * 269.62797 * 9 8 2 13 13 C 1.46504 * 120.00005 * 270.00143 * 12 9 8 14 14 C 1.46499 * 120.00284 * 89.99483 * 12 9 8 15 15 C 1.50703 * 109.46776 * 95.00361 * 14 12 9 16 16 H 1.07999 * 120.00181 * 0.02562 * 15 14 12 17 17 C 1.37871 * 119.99771 * 180.02562 * 15 14 12 18 18 N 1.31517 * 120.00376 * 359.97438 * 17 15 14 19 19 Si 1.86804 * 119.99764 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47414 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46990 * 119.99909 * 19 17 15 22 22 H 1.48504 * 109.47098 * 239.99658 * 19 17 15 23 23 H 1.09007 * 109.46556 * 262.60573 * 1 2 3 24 24 H 1.08994 * 109.47166 * 22.60606 * 1 2 3 25 25 H 1.09002 * 109.47205 * 142.60896 * 1 2 3 26 26 H 1.09004 * 114.39958 * 157.94012 * 4 2 1 27 27 H 1.08998 * 114.26798 * 25.05561 * 4 2 1 28 28 H 1.08996 * 109.47297 * 295.99384 * 7 5 4 29 29 H 1.09006 * 109.46810 * 55.99423 * 7 5 4 30 30 H 1.08997 * 109.47047 * 175.98898 * 7 5 4 31 31 H 1.09004 * 109.47150 * 270.00006 * 13 12 9 32 32 H 1.09005 * 109.46624 * 29.99534 * 13 12 9 33 33 H 1.08990 * 109.47233 * 149.99147 * 13 12 9 34 34 H 1.09000 * 109.46884 * 335.00840 * 14 12 9 35 35 H 1.08995 * 109.47310 * 215.00168 * 14 12 9 36 36 H 0.97003 * 120.00102 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9521 1.0049 0.0000 4 6 2.1422 -0.9234 -1.0660 5 6 2.0338 -1.9775 0.0446 6 1 2.8852 -2.6571 0.0826 7 6 0.6903 -2.7092 0.0612 8 7 2.1157 -0.8811 1.0215 9 16 2.6329 -0.7141 2.5857 10 8 2.5633 -2.0067 3.1716 11 8 1.9537 0.4165 3.1144 12 7 4.2384 -0.3115 2.5308 13 6 5.2580 -1.3635 2.5356 14 6 4.6391 1.0966 2.4774 15 6 4.9332 1.5883 3.8713 16 1 4.8322 0.9188 4.7127 17 6 5.3313 2.8929 4.0723 18 7 5.4549 3.7081 3.0477 19 14 5.6951 3.5027 5.8001 20 1 5.4829 2.3982 6.7698 21 1 7.1050 3.9630 5.8759 22 1 4.7875 4.6314 6.1281 23 1 -0.3633 -0.1323 1.0192 24 1 -0.3633 0.9486 -0.3950 25 1 -0.3634 -0.8165 -0.6241 26 1 3.1654 -0.6722 -1.3454 27 1 1.4949 -1.1091 -1.9231 28 1 -0.1068 -2.0003 0.2852 29 1 0.5108 -3.1614 -0.9143 30 1 0.7097 -3.4872 0.8243 31 1 5.5381 -1.5934 3.5636 32 1 4.8584 -2.2588 2.0591 33 1 6.1357 -1.0213 1.9876 34 1 3.8314 1.6881 2.0463 35 1 5.5322 1.1970 1.8607 36 1 5.7346 4.6261 3.1892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530479129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:32 Heat of formation + Delta-G solvation = -56.604024 kcal Electronic energy + Delta-G solvation = -19193.739869 eV Core-core repulsion = 16226.534130 eV Total energy + Delta-G solvation = -2967.205738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.09115 -38.29349 -37.26269 -36.88078 -34.55611 -30.99885 -30.88498 -29.72644 -28.48145 -26.83682 -24.27433 -22.89149 -21.78141 -19.45952 -18.86127 -18.38724 -18.34000 -17.31224 -16.54119 -16.26510 -15.64419 -15.22071 -15.00413 -14.65980 -14.34505 -14.02121 -13.97333 -13.55769 -13.40912 -13.29073 -13.19382 -13.09387 -13.01187 -12.99132 -12.53003 -12.48849 -12.34522 -12.12176 -12.03331 -11.81650 -11.73372 -10.78611 -10.64394 -10.10691 -9.84473 -8.25089 -6.37491 -0.43841 1.35069 1.37438 1.49532 2.02789 2.36417 2.54847 3.05190 3.16628 3.51898 3.76986 4.01880 4.15281 4.28769 4.31144 4.32543 4.61489 4.64624 4.73812 4.82055 4.92992 4.96872 5.04825 5.06445 5.10276 5.11196 5.22743 5.38874 5.41305 5.50146 5.64350 5.78195 5.88970 6.05661 6.70240 7.31523 8.82845 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030952 B = 0.006599 C = 0.006279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.408658 B = 4242.342083 C = 4458.275507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 H 0.067 0.933 4 C -0.119 4.119 5 C 0.143 3.857 6 H 0.088 0.912 7 C -0.180 4.180 8 N -1.053 6.053 9 S 2.810 3.190 10 O -1.011 7.011 11 O -1.012 7.012 12 N -1.004 6.004 13 C 0.102 3.898 14 C 0.275 3.725 15 C -0.553 4.553 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.958 3.042 20 H -0.272 1.272 21 H -0.266 1.266 22 H -0.277 1.277 23 H 0.041 0.959 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.012 0.988 35 H 0.030 0.970 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.725 -11.262 -12.229 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 H 0.085 0.915 4 C -0.158 4.158 5 C 0.038 3.962 6 H 0.106 0.894 7 C -0.238 4.238 8 N -0.896 5.896 9 S 2.822 3.178 10 O -0.995 6.995 11 O -0.996 6.996 12 N -0.845 5.845 13 C -0.043 4.043 14 C 0.152 3.848 15 C -0.592 4.592 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.197 1.197 21 H -0.191 1.191 22 H -0.203 1.203 23 H 0.060 0.940 24 H 0.097 0.903 25 H 0.126 0.874 26 H 0.114 0.886 27 H 0.141 0.859 28 H 0.099 0.901 29 H 0.126 0.874 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.030 0.970 35 H 0.048 0.952 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.079 -11.182 -11.216 17.348 hybrid contribution 0.594 0.788 1.160 1.523 sum -6.485 -10.394 -10.056 15.850 Atomic orbital electron populations 1.22409 0.92850 1.04571 1.02264 1.22257 0.95012 0.94926 0.84937 0.91471 1.23612 1.02955 0.93564 0.95678 1.22214 0.99488 0.89772 0.84770 0.89365 1.22569 0.96200 1.00826 1.04175 1.60787 1.76395 1.22851 1.29585 1.00652 0.72874 0.71519 0.72710 1.93480 1.87412 1.42524 1.76102 1.93534 1.74071 1.54172 1.77830 1.57623 1.23584 1.14103 1.89207 1.21417 0.92362 0.88813 1.01722 1.18600 0.95213 0.75093 0.95939 1.21843 1.46164 0.96892 0.94308 0.93423 1.25759 0.94957 0.96581 1.01395 1.70008 1.47892 1.06510 1.31829 0.85509 0.78426 0.78250 0.79535 1.19697 1.19052 1.20254 0.93967 0.90328 0.87436 0.88596 0.85936 0.90074 0.87420 0.93329 0.93912 0.90217 0.90041 0.96975 0.95220 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.43 8.30 71.98 0.60 -2.83 16 2 C 0.13 3.49 5.08 41.88 0.21 3.70 16 3 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 4 C -0.12 -2.05 7.66 31.02 0.24 -1.81 16 5 C 0.14 3.11 5.06 41.79 0.21 3.32 16 6 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 7 C -0.18 -3.15 9.12 71.98 0.66 -2.50 16 8 N -1.05 -33.63 3.92 -503.47 -1.97 -35.61 16 9 S 2.81 122.22 6.60 -56.49 -0.37 121.84 16 10 O -1.01 -45.40 17.21 -128.00 -2.20 -47.60 16 11 O -1.01 -53.41 17.11 -128.00 -2.19 -55.60 16 12 N -1.00 -44.66 3.23 -543.22 -1.75 -46.41 16 13 C 0.10 3.66 10.33 127.77 1.32 4.98 16 14 C 0.28 14.64 5.12 85.63 0.44 15.08 16 15 C -0.55 -32.77 9.38 25.60 0.24 -32.53 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.01 0.74 5.46 84.65 0.46 1.20 16 18 N -0.92 -55.13 13.29 21.45 0.28 -54.84 16 19 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 20 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H 0.04 1.10 7.98 -2.38 -0.02 1.08 16 24 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.11 1.50 5.50 -2.39 -0.01 1.49 16 26 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.12 1.19 7.96 -2.39 -0.02 1.18 16 28 H 0.08 1.47 4.23 -2.39 -0.01 1.46 16 29 H 0.11 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.08 2.34 7.79 -2.38 -0.02 2.33 16 33 H 0.08 2.64 7.94 -2.39 -0.02 2.62 16 34 H 0.01 0.70 7.61 -2.39 -0.02 0.68 16 35 H 0.03 1.58 7.96 -2.39 -0.02 1.56 16 36 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -76.83 307.80 -0.75 -77.58 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.06 Total: 4.14 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 4.38 Total: -11.38 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -3.44 Total: -136.86 kcal Atomic # 8 Polarization: -98.81 SS G_CDS: -4.39 Total: -103.20 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 16 Polarization: 122.22 SS G_CDS: -0.37 Total: 121.84 kcal Total: -76.83 -0.75 -77.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530479129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.980 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds