Wall clock time and date at job start Mon Mar 30 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 112.96503 * 2 1 4 4 C 1.53943 * 113.77191 * 131.68066 * 2 1 3 5 5 C 1.53948 * 86.28872 * 90.69527 * 4 2 1 6 6 H 1.09003 * 113.76965 * 269.30683 * 5 4 2 7 7 C 1.52998 * 113.76981 * 138.02337 * 5 4 2 8 8 N 1.47574 * 86.11816 * 23.60831 * 5 4 2 9 9 S 1.65605 * 134.49380 * 155.36186 * 8 5 4 10 10 O 1.42095 * 106.40250 * 23.53645 * 9 8 5 11 11 O 1.42094 * 106.40316 * 156.46025 * 9 8 5 12 12 N 1.65605 * 107.21742 * 269.99927 * 9 8 5 13 13 C 1.46499 * 119.99833 * 270.00169 * 12 9 8 14 14 C 1.46500 * 120.00028 * 89.99661 * 12 9 8 15 15 C 1.50702 * 109.46824 * 95.00278 * 14 12 9 16 16 H 1.07996 * 120.00279 * 0.02562 * 15 14 12 17 17 C 1.37881 * 119.99751 * 180.02562 * 15 14 12 18 18 N 1.31510 * 119.99642 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00178 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47366 * 90.00149 * 19 17 15 21 21 H 1.48497 * 109.47423 * 210.00211 * 19 17 15 22 22 H 1.48501 * 109.47258 * 330.00428 * 19 17 15 23 23 H 1.09002 * 109.47153 * 307.82213 * 1 2 3 24 24 H 1.09001 * 109.46832 * 187.82404 * 1 2 3 25 25 H 1.09004 * 109.47261 * 67.82385 * 1 2 3 26 26 H 1.09004 * 113.74195 * 205.03528 * 4 2 1 27 27 H 1.08997 * 113.74087 * 336.24706 * 4 2 1 28 28 H 1.08996 * 109.47674 * 79.50240 * 7 5 4 29 29 H 1.09001 * 109.47233 * 199.50451 * 7 5 4 30 30 H 1.09001 * 109.47487 * 319.50263 * 7 5 4 31 31 H 1.09006 * 109.47384 * 90.00066 * 13 12 9 32 32 H 1.09003 * 109.47212 * 209.99819 * 13 12 9 33 33 H 1.08998 * 109.47329 * 329.99337 * 13 12 9 34 34 H 1.09000 * 109.47327 * 215.00205 * 14 12 9 35 35 H 1.09005 * 109.47155 * 335.00034 * 14 12 9 36 36 H 0.97001 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9553 1.0036 0.0000 4 6 2.1505 -0.9368 1.0522 5 6 2.1274 -2.0185 -0.0430 6 1 1.2129 -2.6115 -0.0556 7 6 3.3946 -2.8745 -0.0912 8 7 2.1248 -0.9007 -1.0065 9 16 2.5989 -0.7267 -2.5837 10 8 2.5702 -2.0266 -3.1570 11 8 1.8610 0.3695 -3.1059 12 7 4.1869 -0.2571 -2.5692 13 6 4.5293 1.1670 -2.5369 14 6 5.2493 -1.2656 -2.5887 15 6 5.7025 -1.4904 -4.0083 16 1 5.2453 -0.9371 -4.8151 17 6 6.7009 -2.4026 -4.2769 18 7 7.0968 -2.5984 -5.5156 19 14 7.4923 -3.3592 -2.8812 20 1 6.7416 -4.6209 -2.6577 21 1 8.8995 -3.6763 -3.2339 22 1 7.4649 -2.5409 -1.6423 23 1 -0.3633 0.6302 0.8118 24 1 -0.3633 -1.0181 0.1399 25 1 -0.3634 0.3879 -0.9517 26 1 3.1548 -0.6462 1.3608 27 1 1.4917 -1.1485 1.8943 28 1 3.3519 -3.6313 0.6921 29 1 3.4672 -3.3617 -1.0635 30 1 4.2676 -2.2404 0.0636 31 1 4.6116 1.4975 -1.5014 32 1 5.4809 1.3235 -3.0449 33 1 3.7503 1.7395 -3.0403 34 1 6.0909 -0.9185 -1.9893 35 1 4.8703 -2.2006 -2.1758 36 1 7.7989 -3.2404 -5.7047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530479130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:36 Heat of formation + Delta-G solvation = -41.605518 kcal Electronic energy + Delta-G solvation = -19404.781536 eV Core-core repulsion = 16438.226182 eV Total energy + Delta-G solvation = -2966.555354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.59219 -36.60993 -35.60401 -35.13857 -32.37598 -31.26839 -29.08491 -28.35991 -26.95895 -25.13477 -22.47838 -21.89260 -20.56216 -17.85152 -17.16161 -16.97351 -16.44667 -15.86763 -15.42685 -14.75042 -14.25683 -13.71628 -13.50936 -13.10783 -13.05784 -12.82019 -12.51573 -12.37825 -12.23220 -11.99707 -11.69907 -11.63750 -11.46055 -11.43227 -11.32633 -11.19157 -10.65866 -10.50048 -10.42753 -10.36819 -10.21380 -9.54165 -8.93731 -8.59182 -8.08838 -6.08080 -4.07108 1.10982 3.25739 3.30743 3.32040 3.40110 4.02845 4.37727 4.38635 4.64749 4.76199 4.95289 5.11358 5.21643 5.22907 5.28272 5.55564 5.60047 5.62704 5.66597 5.82116 5.88769 5.94139 6.02863 6.15431 6.22753 6.26212 6.39861 6.48815 6.73041 6.78441 7.10530 7.42118 7.58863 8.49711 8.96954 9.50846 11.05662 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.008048 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.054469 B = 3478.399286 C = 3957.248931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.087 0.913 4 C -0.141 4.141 5 C 0.156 3.844 6 H 0.090 0.910 7 C -0.178 4.178 8 N -1.044 6.044 9 S 2.793 3.207 10 O -0.960 6.960 11 O -0.993 6.993 12 N -0.989 5.989 13 C 0.096 3.904 14 C 0.227 3.773 15 C -0.532 4.532 16 H 0.077 0.923 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.871 3.129 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.264 1.264 23 H 0.070 0.930 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.031 0.969 35 H 0.031 0.969 36 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.240 4.230 16.337 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.043 3.957 3 H 0.105 0.895 4 C -0.180 4.180 5 C 0.050 3.950 6 H 0.108 0.892 7 C -0.236 4.236 8 N -0.883 5.883 9 S 2.804 3.196 10 O -0.944 6.944 11 O -0.977 6.977 12 N -0.830 5.830 13 C -0.050 4.050 14 C 0.103 3.897 15 C -0.571 4.571 16 H 0.095 0.905 17 C -0.130 4.130 18 N -0.534 5.534 19 Si 0.697 3.303 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.189 1.189 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.559 4.009 15.202 18.400 hybrid contribution 0.816 -0.512 0.688 1.184 sum -8.744 3.497 15.890 18.471 Atomic orbital electron populations 1.21996 0.94318 1.02548 1.02854 1.21979 0.93556 0.94774 0.85407 0.89531 1.23782 1.01963 0.96037 0.96243 1.22150 0.98622 0.88848 0.85402 0.89232 1.22240 0.96976 1.00429 1.03963 1.61250 1.76488 1.20771 1.29827 1.01571 0.72851 0.73285 0.71924 1.93612 1.86481 1.40008 1.74251 1.93512 1.71263 1.55907 1.77022 1.57425 1.24081 1.12882 1.88624 1.21354 1.03070 0.80561 1.00063 1.19467 0.85908 0.85782 0.98499 1.21397 1.19931 1.23728 0.92016 0.90506 1.24870 0.96354 0.96274 0.95482 1.69896 1.29708 1.35293 1.18454 0.86938 0.79103 0.81214 0.83014 1.19735 1.20922 1.18912 0.91107 0.92014 0.91523 0.89045 0.90522 0.90789 0.90472 0.91481 0.94334 0.90188 0.91432 0.95123 0.95107 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.86 37.16 0.37 -1.20 16 2 C 0.15 1.72 5.15 -66.86 -0.34 1.37 16 3 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 4 C -0.14 -1.34 7.43 -25.81 -0.19 -1.53 16 5 C 0.16 1.97 4.58 -66.87 -0.31 1.66 16 6 H 0.09 1.00 7.76 -51.93 -0.40 0.60 16 7 C -0.18 -2.43 9.12 37.16 0.34 -2.09 16 8 N -1.04 -16.14 3.83 -105.07 -0.40 -16.54 16 9 S 2.79 58.03 6.49 -107.50 -0.70 57.33 16 10 O -0.96 -23.63 16.74 -57.17 -0.96 -24.59 16 11 O -0.99 -21.84 16.71 -57.17 -0.96 -22.79 16 12 N -0.99 -20.83 3.23 -123.05 -0.40 -21.22 16 13 C 0.10 1.68 10.68 59.85 0.64 2.32 16 14 C 0.23 5.42 4.15 -5.19 -0.02 5.40 16 15 C -0.53 -15.43 9.94 -34.44 -0.34 -15.77 16 16 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 17 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.90 -27.83 13.96 55.43 0.77 -27.05 16 19 Si 0.87 21.12 27.47 -169.99 -4.67 16.45 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.26 -5.91 6.54 56.52 0.37 -5.55 16 23 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.57 7.47 -51.93 -0.39 0.18 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 0.84 8.01 -51.93 -0.42 0.43 16 27 H 0.08 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.08 1.30 7.09 -51.93 -0.37 0.93 16 30 H 0.07 0.93 7.88 -51.93 -0.41 0.52 16 31 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 1.43 8.07 -51.93 -0.42 1.01 16 33 H 0.07 1.15 7.02 -51.93 -0.36 0.79 16 34 H 0.03 0.70 7.17 -51.93 -0.37 0.32 16 35 H 0.03 0.73 5.31 -51.93 -0.28 0.46 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 306.50 15.07 4.62 4.62 Total: -1.00 -35.34 306.50 -8.18 -43.52 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -5.54 Total: -1.91 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 0.04 Total: -7.81 kcal Atomic # 7 Polarization: -64.79 SS G_CDS: -0.03 Total: -64.81 kcal Atomic # 8 Polarization: -45.47 SS G_CDS: -1.91 Total: -47.39 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 58.03 SS G_CDS: -0.70 Total: 57.33 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -35.34 -8.18 -43.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530479130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.915 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds