Wall clock time and date at job start Mon Mar 30 2020 04:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 112.96503 * 2 1 4 4 C 1.53943 * 113.77191 * 131.68066 * 2 1 3 5 5 C 1.53948 * 86.28872 * 90.69527 * 4 2 1 6 6 H 1.09003 * 113.76965 * 269.30683 * 5 4 2 7 7 C 1.52998 * 113.76981 * 138.02337 * 5 4 2 8 8 N 1.47574 * 86.11816 * 23.60831 * 5 4 2 9 9 S 1.65605 * 134.49380 * 155.36186 * 8 5 4 10 10 O 1.42095 * 106.40250 * 23.53645 * 9 8 5 11 11 O 1.42094 * 106.40316 * 156.46025 * 9 8 5 12 12 N 1.65605 * 107.21742 * 269.99927 * 9 8 5 13 13 C 1.46499 * 119.99833 * 270.00169 * 12 9 8 14 14 C 1.46500 * 120.00028 * 89.99661 * 12 9 8 15 15 C 1.50702 * 109.46824 * 95.00278 * 14 12 9 16 16 H 1.07996 * 120.00279 * 0.02562 * 15 14 12 17 17 C 1.37881 * 119.99751 * 180.02562 * 15 14 12 18 18 N 1.31510 * 119.99642 * 180.02562 * 17 15 14 19 19 Si 1.86793 * 120.00178 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.47366 * 90.00149 * 19 17 15 21 21 H 1.48497 * 109.47423 * 210.00211 * 19 17 15 22 22 H 1.48501 * 109.47258 * 330.00428 * 19 17 15 23 23 H 1.09002 * 109.47153 * 307.82213 * 1 2 3 24 24 H 1.09001 * 109.46832 * 187.82404 * 1 2 3 25 25 H 1.09004 * 109.47261 * 67.82385 * 1 2 3 26 26 H 1.09004 * 113.74195 * 205.03528 * 4 2 1 27 27 H 1.08997 * 113.74087 * 336.24706 * 4 2 1 28 28 H 1.08996 * 109.47674 * 79.50240 * 7 5 4 29 29 H 1.09001 * 109.47233 * 199.50451 * 7 5 4 30 30 H 1.09001 * 109.47487 * 319.50263 * 7 5 4 31 31 H 1.09006 * 109.47384 * 90.00066 * 13 12 9 32 32 H 1.09003 * 109.47212 * 209.99819 * 13 12 9 33 33 H 1.08998 * 109.47329 * 329.99337 * 13 12 9 34 34 H 1.09000 * 109.47327 * 215.00205 * 14 12 9 35 35 H 1.09005 * 109.47155 * 335.00034 * 14 12 9 36 36 H 0.97001 * 120.00044 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9553 1.0036 0.0000 4 6 2.1505 -0.9368 1.0522 5 6 2.1274 -2.0185 -0.0430 6 1 1.2129 -2.6115 -0.0556 7 6 3.3946 -2.8745 -0.0912 8 7 2.1248 -0.9007 -1.0065 9 16 2.5989 -0.7267 -2.5837 10 8 2.5702 -2.0266 -3.1570 11 8 1.8610 0.3695 -3.1059 12 7 4.1869 -0.2571 -2.5692 13 6 4.5293 1.1670 -2.5369 14 6 5.2493 -1.2656 -2.5887 15 6 5.7025 -1.4904 -4.0083 16 1 5.2453 -0.9371 -4.8151 17 6 6.7009 -2.4026 -4.2769 18 7 7.0968 -2.5984 -5.5156 19 14 7.4923 -3.3592 -2.8812 20 1 6.7416 -4.6209 -2.6577 21 1 8.8995 -3.6763 -3.2339 22 1 7.4649 -2.5409 -1.6423 23 1 -0.3633 0.6302 0.8118 24 1 -0.3633 -1.0181 0.1399 25 1 -0.3634 0.3879 -0.9517 26 1 3.1548 -0.6462 1.3608 27 1 1.4917 -1.1485 1.8943 28 1 3.3519 -3.6313 0.6921 29 1 3.4672 -3.3617 -1.0635 30 1 4.2676 -2.2404 0.0636 31 1 4.6116 1.4975 -1.5014 32 1 5.4809 1.3235 -3.0449 33 1 3.7503 1.7395 -3.0403 34 1 6.0909 -0.9185 -1.9893 35 1 4.8703 -2.2006 -2.1758 36 1 7.7989 -3.2404 -5.7047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530479130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:36 Heat of formation + Delta-G solvation = -69.530272 kcal Electronic energy + Delta-G solvation = -19405.992444 eV Core-core repulsion = 16438.226182 eV Total energy + Delta-G solvation = -2967.766263 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55452 -38.32628 -37.32546 -36.87286 -34.54072 -32.18640 -30.36375 -30.09690 -27.81497 -26.82171 -23.85537 -23.41870 -21.65632 -19.41200 -19.05077 -18.58688 -17.86340 -17.40879 -16.49711 -16.32695 -15.85386 -15.25178 -14.92031 -14.54074 -14.42302 -14.25335 -13.94219 -13.73738 -13.45141 -13.22667 -13.17839 -13.14728 -13.03288 -12.78459 -12.66203 -12.42528 -12.36533 -12.20096 -12.01193 -11.74490 -11.49434 -11.26935 -10.81039 -10.04094 -9.79117 -8.32199 -6.38573 -0.43769 1.33244 1.38260 1.46742 2.01033 2.32871 2.51529 3.01380 3.19352 3.59678 3.73057 4.01755 4.13967 4.25252 4.31841 4.41026 4.54913 4.61119 4.68262 4.81337 4.83262 4.89499 4.95742 4.98296 5.12363 5.17138 5.21850 5.32303 5.35203 5.45964 5.51545 5.75842 5.78246 6.27692 6.63731 7.24293 8.85791 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.008048 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.054469 B = 3478.399286 C = 3957.248931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.139 3.861 3 H 0.096 0.904 4 C -0.112 4.112 5 C 0.143 3.857 6 H 0.104 0.896 7 C -0.182 4.182 8 N -1.047 6.047 9 S 2.799 3.201 10 O -1.013 7.013 11 O -1.017 7.017 12 N -0.999 5.999 13 C 0.090 3.910 14 C 0.238 3.762 15 C -0.547 4.547 16 H 0.022 0.978 17 C 0.005 3.995 18 N -0.949 5.949 19 Si 0.944 3.056 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.225 1.225 23 H 0.103 0.897 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.101 0.899 27 H 0.115 0.885 28 H 0.107 0.893 29 H 0.036 0.964 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.037 0.963 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.385 4.308 21.021 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.034 3.966 3 H 0.114 0.886 4 C -0.152 4.152 5 C 0.038 3.962 6 H 0.122 0.878 7 C -0.239 4.239 8 N -0.891 5.891 9 S 2.812 3.188 10 O -0.996 6.996 11 O -1.001 7.001 12 N -0.840 5.840 13 C -0.055 4.055 14 C 0.113 3.887 15 C -0.587 4.587 16 H 0.040 0.960 17 C -0.192 4.192 18 N -0.589 5.589 19 Si 0.765 3.235 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.148 1.148 23 H 0.122 0.878 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.125 0.875 29 H 0.055 0.945 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.722 4.132 19.881 22.514 hybrid contribution 0.734 -0.473 -0.799 1.183 sum -8.988 3.659 19.083 21.408 Atomic orbital electron populations 1.22045 0.93221 1.03678 1.02808 1.22470 0.94566 0.95323 0.84221 0.88577 1.23670 1.03177 0.92730 0.95609 1.22593 0.98856 0.89190 0.85513 0.87824 1.22289 0.97549 1.01273 1.02834 1.60994 1.76336 1.23509 1.28271 1.00957 0.72791 0.71860 0.73200 1.93534 1.87071 1.42303 1.76733 1.93463 1.71600 1.56413 1.78662 1.57369 1.23487 1.13755 1.89353 1.21563 1.02381 0.78826 1.02760 1.19219 0.87231 0.87048 0.95193 1.21733 1.19952 1.23362 0.93613 0.95956 1.25991 0.96983 0.97423 0.98817 1.70079 1.30809 1.36560 1.21490 0.85781 0.77787 0.79704 0.80230 1.19209 1.20218 1.14770 0.87815 0.91245 0.94016 0.88033 0.86633 0.87482 0.94472 0.91585 0.89876 0.91231 0.91637 0.92791 0.94538 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.63 9.86 71.98 0.71 -1.92 16 2 C 0.14 2.70 5.15 45.09 0.23 2.93 16 3 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.11 -1.55 7.43 31.25 0.23 -1.31 16 5 C 0.14 3.16 4.58 45.09 0.21 3.37 16 6 H 0.10 1.98 7.76 -2.39 -0.02 1.97 16 7 C -0.18 -4.47 9.12 71.98 0.66 -3.81 16 8 N -1.05 -30.46 3.83 -486.33 -1.86 -32.32 16 9 S 2.80 118.06 6.49 -56.49 -0.37 117.69 16 10 O -1.01 -52.03 16.74 -128.00 -2.14 -54.17 16 11 O -1.02 -45.82 16.71 -128.00 -2.14 -47.96 16 12 N -1.00 -42.10 3.23 -543.21 -1.75 -43.85 16 13 C 0.09 3.09 10.68 127.77 1.36 4.45 16 14 C 0.24 11.28 4.15 85.63 0.36 11.63 16 15 C -0.55 -33.00 9.94 25.60 0.25 -32.75 16 16 H 0.02 1.53 8.06 -2.91 -0.02 1.50 16 17 C 0.01 0.33 5.47 84.66 0.46 0.79 16 18 N -0.95 -61.41 13.96 21.45 0.30 -61.11 16 19 Si 0.94 43.13 27.47 68.60 1.88 45.02 16 20 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.23 -8.81 6.54 99.48 0.65 -8.16 16 23 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 1.04 7.47 -2.39 -0.02 1.02 16 25 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.10 1.28 8.01 -2.39 -0.02 1.26 16 27 H 0.12 0.83 8.10 -2.39 -0.02 0.82 16 28 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.04 1.21 7.09 -2.39 -0.02 1.20 16 30 H 0.07 1.61 7.88 -2.39 -0.02 1.59 16 31 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 32 H 0.07 2.50 8.07 -2.39 -0.02 2.48 16 33 H 0.06 2.24 7.02 -2.39 -0.02 2.23 16 34 H 0.05 2.31 7.17 -2.39 -0.02 2.30 16 35 H 0.04 1.71 5.31 -2.38 -0.01 1.70 16 36 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -82.89 306.50 -0.61 -83.50 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 1.00 Total: 9.82 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 4.47 Total: -16.62 kcal Atomic # 7 Polarization: -133.97 SS G_CDS: -3.31 Total: -137.28 kcal Atomic # 8 Polarization: -97.85 SS G_CDS: -4.28 Total: -102.13 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.02 kcal Atomic # 16 Polarization: 118.06 SS G_CDS: -0.37 Total: 117.69 kcal Total: -82.89 -0.61 -83.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530479130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.967 kcal (2) G-P(sol) polarization free energy of solvation -82.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds