Wall clock time and date at job start Mon Mar 30 2020 04:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 112.74189 * 2 1 4 4 C 1.53496 * 113.51898 * 229.20563 * 2 1 3 5 5 C 1.53497 * 83.34595 * 271.27905 * 4 2 1 6 6 H 1.09007 * 113.46597 * 88.71327 * 5 4 2 7 7 C 1.52997 * 113.52407 * 219.14273 * 5 4 2 8 8 N 1.47062 * 87.98427 * 333.93208 * 5 4 2 9 9 S 1.65601 * 136.05920 * 207.15606 * 8 5 4 10 10 O 1.42097 * 106.40119 * 23.48483 * 9 8 5 11 11 O 1.42091 * 106.40342 * 156.40956 * 9 8 5 12 12 N 1.65604 * 107.21579 * 269.94815 * 9 8 5 13 13 C 1.46499 * 120.00268 * 269.99528 * 12 9 8 14 14 C 1.46500 * 119.99833 * 89.99915 * 12 9 8 15 15 C 1.50708 * 109.47220 * 95.00166 * 14 12 9 16 16 H 1.07995 * 119.99987 * 359.97438 * 15 14 12 17 17 C 1.37876 * 119.99874 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00159 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99694 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47239 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46844 * 119.99618 * 19 17 15 22 22 H 1.48500 * 109.46966 * 239.99323 * 19 17 15 23 23 H 1.09006 * 109.46650 * 290.33614 * 1 2 3 24 24 H 1.08999 * 109.46878 * 50.33136 * 1 2 3 25 25 H 1.08995 * 109.47309 * 170.33622 * 1 2 3 26 26 H 1.09005 * 114.20769 * 24.86699 * 4 2 1 27 27 H 1.08998 * 114.20673 * 157.69054 * 4 2 1 28 28 H 1.08996 * 109.47045 * 158.46363 * 7 5 4 29 29 H 1.09007 * 109.46940 * 278.46430 * 7 5 4 30 30 H 1.09005 * 109.46820 * 38.45990 * 7 5 4 31 31 H 1.09001 * 109.47065 * 90.00178 * 13 12 9 32 32 H 1.08991 * 109.47607 * 210.00191 * 13 12 9 33 33 H 1.09001 * 109.46988 * 330.00616 * 13 12 9 34 34 H 1.09001 * 109.46971 * 214.99962 * 14 12 9 35 35 H 1.08995 * 109.47662 * 334.99727 * 14 12 9 36 36 H 0.97002 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9514 1.0053 0.0000 4 6 2.1425 -0.9195 -1.0655 5 6 2.0404 -1.9758 0.0435 6 1 1.0862 -2.5028 0.0544 7 6 3.2401 -2.9237 0.0965 8 7 2.1157 -0.8805 1.0220 9 16 2.6332 -0.7124 2.5861 10 8 3.5695 -1.7568 2.8134 11 8 2.9456 0.6629 2.7597 12 7 1.3366 -1.0249 3.5677 13 6 0.4464 0.0651 3.9747 14 6 1.0798 -2.3914 4.0291 15 6 1.6987 -2.5871 5.3892 16 1 2.2306 -1.7749 5.8623 17 6 1.5869 -3.8033 6.0290 18 7 0.9397 -4.7925 5.4526 19 14 2.3548 -4.0460 7.7145 20 1 3.0221 -2.7895 8.1400 21 1 1.2966 -4.4012 8.6939 22 1 3.3564 -5.1404 7.6492 23 1 -0.3633 0.3572 0.9637 24 1 -0.3633 0.6560 -0.7910 25 1 -0.3634 -1.0130 -0.1725 26 1 1.4938 -1.1060 -1.9214 27 1 3.1642 -0.6618 -1.3445 28 1 3.3037 -3.3744 1.0869 29 1 3.1178 -3.7068 -0.6519 30 1 4.1537 -2.3653 -0.1081 31 1 -0.3600 0.1661 3.2482 32 1 0.0260 -0.1561 4.9556 33 1 1.0107 0.9964 4.0228 34 1 0.0043 -2.5576 4.0920 35 1 1.5163 -3.1005 3.3258 36 1 0.8607 -5.6480 5.9029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000530479131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:39 Heat of formation + Delta-G solvation = -43.645353 kcal Electronic energy + Delta-G solvation = -19289.942109 eV Core-core repulsion = 16323.298301 eV Total energy + Delta-G solvation = -2966.643808 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.76612 -36.53359 -35.43435 -35.07575 -32.41769 -31.05894 -29.04920 -27.74950 -26.88508 -25.01963 -22.29459 -22.24536 -20.64629 -17.82539 -16.88910 -16.65225 -16.28302 -15.81622 -15.27853 -14.75648 -14.19389 -13.70185 -13.40405 -13.21264 -12.99784 -12.71714 -12.29584 -12.17709 -12.07758 -11.78694 -11.62057 -11.56672 -11.40001 -11.30035 -11.10374 -11.06415 -10.67287 -10.53840 -10.43534 -10.13846 -10.01315 -9.72546 -8.87409 -8.43727 -8.00863 -6.05806 -4.09548 1.22493 3.31195 3.38688 3.43728 3.47951 4.16624 4.39698 4.45500 4.71096 4.88641 5.00326 5.20151 5.28813 5.36454 5.39838 5.63463 5.69882 5.71027 5.76104 5.88454 5.92871 6.04366 6.15706 6.24088 6.30929 6.37666 6.59764 6.60363 6.86947 7.24565 7.43251 7.64139 7.92180 8.21946 8.93213 9.55626 11.02746 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.007025 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.535062 B = 3985.060114 C = 4204.555492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.085 0.915 4 C -0.145 4.145 5 C 0.154 3.846 6 H 0.090 0.910 7 C -0.170 4.170 8 N -1.042 6.042 9 S 2.797 3.203 10 O -0.956 6.956 11 O -0.996 6.996 12 N -0.999 5.999 13 C 0.097 3.903 14 C 0.259 3.741 15 C -0.527 4.527 16 H 0.060 0.940 17 C 0.062 3.938 18 N -0.896 5.896 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.282 1.282 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.036 0.964 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.036 0.964 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 7.245 -13.462 15.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.103 0.897 4 C -0.184 4.184 5 C 0.048 3.952 6 H 0.107 0.893 7 C -0.228 4.228 8 N -0.880 5.880 9 S 2.807 3.193 10 O -0.940 6.940 11 O -0.981 6.981 12 N -0.840 5.840 13 C -0.050 4.050 14 C 0.137 3.863 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.140 4.140 18 N -0.535 5.535 19 Si 0.724 3.276 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 H 0.082 0.918 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.230 7.310 -12.881 14.862 hybrid contribution -0.134 -0.393 1.066 1.144 sum -1.364 6.918 -11.815 13.759 Atomic orbital electron populations 1.22039 0.94346 1.02776 1.02619 1.21800 0.93595 0.95283 0.85399 0.89654 1.23616 1.01955 0.96786 0.96087 1.22037 0.99172 0.88933 0.85067 0.89269 1.22145 0.97116 0.99306 1.04193 1.61255 1.78071 1.20481 1.28227 1.01519 0.73892 0.72770 0.71102 1.93608 1.59082 1.57624 1.83716 1.93503 1.83665 1.35433 1.85458 1.57746 1.46692 1.16824 1.62779 1.21313 0.93420 0.89269 1.00997 1.19008 0.97400 0.74798 0.95121 1.21542 1.34719 0.97910 1.02507 0.92197 1.24933 0.95196 0.95654 0.98259 1.69933 1.42054 1.03154 1.38373 0.86460 0.79055 0.78367 0.83683 1.19660 1.20951 1.20781 0.91824 0.91257 0.91730 0.89994 0.88996 0.89990 0.91502 0.92224 0.94525 0.90485 0.91779 0.94959 0.94599 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.79 37.16 0.36 -1.27 16 2 C 0.15 1.78 5.06 -72.39 -0.37 1.41 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.14 -1.47 7.59 -26.22 -0.20 -1.67 16 5 C 0.15 2.08 4.37 -72.39 -0.32 1.76 16 6 H 0.09 1.12 7.34 -51.93 -0.38 0.74 16 7 C -0.17 -2.42 9.30 37.16 0.35 -2.08 16 8 N -1.04 -16.83 3.94 -110.64 -0.44 -17.27 16 9 S 2.80 58.91 6.64 -107.50 -0.71 58.20 16 10 O -0.96 -23.45 15.23 -57.17 -0.87 -24.32 16 11 O -1.00 -22.11 16.74 -57.17 -0.96 -23.07 16 12 N -1.00 -21.68 3.23 -123.05 -0.40 -22.07 16 13 C 0.10 1.75 10.68 59.85 0.64 2.39 16 14 C 0.26 6.64 5.08 -5.19 -0.03 6.61 16 15 C -0.53 -15.13 9.38 -34.44 -0.32 -15.45 16 16 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 17 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 18 N -0.90 -26.34 13.29 55.43 0.74 -25.61 16 19 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H 0.06 0.72 7.74 -51.93 -0.40 0.32 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.65 7.06 -51.93 -0.37 0.28 16 26 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.09 0.89 8.01 -51.93 -0.42 0.48 16 28 H 0.08 1.47 6.98 -51.93 -0.36 1.11 16 29 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16 31 H 0.04 0.55 7.74 -51.93 -0.40 0.15 16 32 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 1.11 7.02 -51.93 -0.36 0.75 16 34 H 0.03 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.04 0.98 7.61 -51.93 -0.40 0.58 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -33.87 308.95 -8.56 -42.43 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -5.58 Total: -3.45 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: 0.02 Total: -6.63 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -0.10 Total: -64.95 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: -1.83 Total: -47.39 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Atomic # 16 Polarization: 58.91 SS G_CDS: -0.71 Total: 58.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.87 -8.56 -42.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530479131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.219 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds