Wall clock time and date at job start Mon Mar 30 2020 04:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 112.74189 * 2 1 4 4 C 1.53496 * 113.51898 * 229.20563 * 2 1 3 5 5 C 1.53497 * 83.34595 * 271.27905 * 4 2 1 6 6 H 1.09007 * 113.46597 * 88.71327 * 5 4 2 7 7 C 1.52997 * 113.52407 * 219.14273 * 5 4 2 8 8 N 1.47062 * 87.98427 * 333.93208 * 5 4 2 9 9 S 1.65601 * 136.05920 * 207.15606 * 8 5 4 10 10 O 1.42097 * 106.40119 * 23.48483 * 9 8 5 11 11 O 1.42091 * 106.40342 * 156.40956 * 9 8 5 12 12 N 1.65604 * 107.21579 * 269.94815 * 9 8 5 13 13 C 1.46499 * 120.00268 * 269.99528 * 12 9 8 14 14 C 1.46500 * 119.99833 * 89.99915 * 12 9 8 15 15 C 1.50708 * 109.47220 * 95.00166 * 14 12 9 16 16 H 1.07995 * 119.99987 * 359.97438 * 15 14 12 17 17 C 1.37876 * 119.99874 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00159 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99694 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47239 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46844 * 119.99618 * 19 17 15 22 22 H 1.48500 * 109.46966 * 239.99323 * 19 17 15 23 23 H 1.09006 * 109.46650 * 290.33614 * 1 2 3 24 24 H 1.08999 * 109.46878 * 50.33136 * 1 2 3 25 25 H 1.08995 * 109.47309 * 170.33622 * 1 2 3 26 26 H 1.09005 * 114.20769 * 24.86699 * 4 2 1 27 27 H 1.08998 * 114.20673 * 157.69054 * 4 2 1 28 28 H 1.08996 * 109.47045 * 158.46363 * 7 5 4 29 29 H 1.09007 * 109.46940 * 278.46430 * 7 5 4 30 30 H 1.09005 * 109.46820 * 38.45990 * 7 5 4 31 31 H 1.09001 * 109.47065 * 90.00178 * 13 12 9 32 32 H 1.08991 * 109.47607 * 210.00191 * 13 12 9 33 33 H 1.09001 * 109.46988 * 330.00616 * 13 12 9 34 34 H 1.09001 * 109.46971 * 214.99962 * 14 12 9 35 35 H 1.08995 * 109.47662 * 334.99727 * 14 12 9 36 36 H 0.97002 * 119.99673 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9514 1.0053 0.0000 4 6 2.1425 -0.9195 -1.0655 5 6 2.0404 -1.9758 0.0435 6 1 1.0862 -2.5028 0.0544 7 6 3.2401 -2.9237 0.0965 8 7 2.1157 -0.8805 1.0220 9 16 2.6332 -0.7124 2.5861 10 8 3.5695 -1.7568 2.8134 11 8 2.9456 0.6629 2.7597 12 7 1.3366 -1.0249 3.5677 13 6 0.4464 0.0651 3.9747 14 6 1.0798 -2.3914 4.0291 15 6 1.6987 -2.5871 5.3892 16 1 2.2306 -1.7749 5.8623 17 6 1.5869 -3.8033 6.0290 18 7 0.9397 -4.7925 5.4526 19 14 2.3548 -4.0460 7.7145 20 1 3.0221 -2.7895 8.1400 21 1 1.2966 -4.4012 8.6939 22 1 3.3564 -5.1404 7.6492 23 1 -0.3633 0.3572 0.9637 24 1 -0.3633 0.6560 -0.7910 25 1 -0.3634 -1.0130 -0.1725 26 1 1.4938 -1.1060 -1.9214 27 1 3.1642 -0.6618 -1.3445 28 1 3.3037 -3.3744 1.0869 29 1 3.1178 -3.7068 -0.6519 30 1 4.1537 -2.3653 -0.1081 31 1 -0.3600 0.1661 3.2482 32 1 0.0260 -0.1561 4.9556 33 1 1.0107 0.9964 4.0228 34 1 0.0043 -2.5576 4.0920 35 1 1.5163 -3.1005 3.3258 36 1 0.8607 -5.6480 5.9029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000530479131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:39 Heat of formation + Delta-G solvation = -68.702503 kcal Electronic energy + Delta-G solvation = -19291.028668 eV Core-core repulsion = 16323.298301 eV Total energy + Delta-G solvation = -2967.730368 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.81168 -38.27428 -37.23516 -36.83813 -34.54018 -32.06158 -30.22227 -29.70611 -27.80388 -26.81411 -24.22424 -23.33584 -21.80223 -19.44007 -18.65442 -18.32255 -17.91629 -17.35426 -16.65706 -16.25974 -15.72759 -15.24598 -15.01741 -14.65059 -14.15791 -14.07083 -13.88098 -13.80241 -13.36341 -13.18172 -13.08780 -13.04805 -12.97025 -12.73268 -12.62431 -12.50527 -12.44425 -12.31589 -12.03334 -11.77908 -11.59302 -11.13356 -10.64109 -10.08538 -9.76527 -8.24236 -6.36579 -0.36532 1.34889 1.37391 1.49284 1.99529 2.36756 2.60896 3.06014 3.20981 3.53848 3.79994 4.01899 4.16970 4.28161 4.32404 4.43150 4.56201 4.61827 4.75358 4.86562 4.90896 4.95809 4.98944 5.09193 5.12197 5.20350 5.23431 5.40149 5.44177 5.52093 5.66048 5.77532 5.91718 6.07046 6.71383 7.32363 8.83408 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027812 B = 0.007025 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.535062 B = 3985.060114 C = 4204.555492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.137 3.863 3 H 0.089 0.911 4 C -0.117 4.117 5 C 0.141 3.859 6 H 0.100 0.900 7 C -0.170 4.170 8 N -1.048 6.048 9 S 2.806 3.194 10 O -1.002 7.002 11 O -1.013 7.013 12 N -1.008 6.008 13 C 0.092 3.908 14 C 0.278 3.722 15 C -0.552 4.552 16 H 0.048 0.952 17 C 0.013 3.987 18 N -0.922 5.922 19 Si 0.957 3.043 20 H -0.272 1.272 21 H -0.267 1.267 22 H -0.277 1.277 23 H 0.049 0.951 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.123 0.877 27 H 0.099 0.901 28 H 0.035 0.965 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.025 0.975 35 H 0.013 0.987 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.930 7.892 -15.059 17.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.107 0.893 4 C -0.157 4.157 5 C 0.036 3.964 6 H 0.118 0.882 7 C -0.228 4.228 8 N -0.891 5.891 9 S 2.818 3.182 10 O -0.986 6.986 11 O -0.998 6.998 12 N -0.849 5.849 13 C -0.054 4.054 14 C 0.154 3.846 15 C -0.591 4.591 16 H 0.066 0.934 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.782 3.218 20 H -0.197 1.197 21 H -0.192 1.192 22 H -0.203 1.203 23 H 0.068 0.932 24 H 0.119 0.881 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.031 0.969 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.041 7.983 -14.468 16.650 hybrid contribution 0.091 -0.567 1.436 1.546 sum -1.950 7.416 -13.032 15.121 Atomic orbital electron populations 1.22070 0.92674 1.03776 1.03096 1.22250 0.94986 0.95381 0.84179 0.89310 1.23558 1.03149 0.93325 0.95624 1.22436 0.99188 0.89196 0.85554 0.88195 1.22157 0.97890 1.00363 1.02421 1.61015 1.78254 1.23159 1.26628 1.00896 0.73586 0.71682 0.72082 1.93546 1.61149 1.58862 1.85060 1.93465 1.84055 1.35910 1.86343 1.57689 1.47300 1.15935 1.63983 1.21501 0.93920 0.88262 1.01714 1.18519 0.96162 0.76529 0.93391 1.21848 1.35198 0.98017 1.04026 0.93396 1.25747 0.95571 0.95354 1.01982 1.70012 1.42691 1.03585 1.39861 0.85524 0.78604 0.78173 0.79513 1.19685 1.19153 1.20306 0.93191 0.88052 0.91371 0.85898 0.88274 0.94564 0.88409 0.92211 0.91181 0.91156 0.91199 0.95693 0.96897 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.79 71.98 0.70 -2.02 16 2 C 0.14 2.96 5.06 41.79 0.21 3.17 16 3 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.12 -1.92 7.59 30.93 0.23 -1.69 16 5 C 0.14 3.57 4.37 41.79 0.18 3.75 16 6 H 0.10 2.30 7.34 -2.38 -0.02 2.29 16 7 C -0.17 -4.81 9.30 71.98 0.67 -4.14 16 8 N -1.05 -33.00 3.94 -503.95 -1.99 -34.98 16 9 S 2.81 120.65 6.64 -56.49 -0.38 120.27 16 10 O -1.00 -51.43 15.23 -128.00 -1.95 -53.38 16 11 O -1.01 -45.36 16.74 -128.00 -2.14 -47.50 16 12 N -1.01 -44.65 3.23 -543.23 -1.75 -46.40 16 13 C 0.09 3.30 10.68 127.77 1.36 4.66 16 14 C 0.28 14.71 5.08 85.64 0.43 15.15 16 15 C -0.55 -32.51 9.38 25.60 0.24 -32.27 16 16 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 17 C 0.01 0.76 5.46 84.65 0.46 1.22 16 18 N -0.92 -54.91 13.29 21.45 0.28 -54.63 16 19 Si 0.96 45.74 29.54 68.60 2.03 47.77 16 20 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 23 H 0.05 1.01 7.74 -2.38 -0.02 0.99 16 24 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.07 1.14 7.06 -2.39 -0.02 1.12 16 26 H 0.12 1.15 8.11 -2.38 -0.02 1.13 16 27 H 0.10 1.55 8.01 -2.39 -0.02 1.53 16 28 H 0.04 1.35 6.98 -2.39 -0.02 1.34 16 29 H 0.10 2.07 8.14 -2.38 -0.02 2.05 16 30 H 0.06 1.63 7.98 -2.38 -0.02 1.61 16 31 H 0.07 2.03 7.74 -2.39 -0.02 2.01 16 32 H 0.07 2.59 8.07 -2.39 -0.02 2.57 16 33 H 0.07 2.41 7.02 -2.39 -0.02 2.40 16 34 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 35 H 0.01 0.74 7.61 -2.39 -0.02 0.72 16 36 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -75.39 308.95 -0.34 -75.73 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.05 Total: 5.27 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: 4.50 Total: -12.15 kcal Atomic # 7 Polarization: -132.56 SS G_CDS: -3.45 Total: -136.01 kcal Atomic # 8 Polarization: -96.78 SS G_CDS: -4.09 Total: -100.88 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 16 Polarization: 120.65 SS G_CDS: -0.38 Total: 120.27 kcal Total: -75.39 -0.34 -75.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000530479131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.031 kcal (2) G-P(sol) polarization free energy of solvation -75.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds