Wall clock time and date at job start Mon Mar 30 2020 04:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47163 * 2 1 4 4 C 1.50702 * 109.47290 * 119.99949 * 2 1 3 5 5 H 1.07996 * 119.99716 * 119.99824 * 4 2 1 6 6 C 1.37875 * 119.99833 * 300.00503 * 4 2 1 7 7 N 1.31513 * 119.99549 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00182 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47229 * 90.00422 * 8 6 4 10 10 H 1.48497 * 109.47294 * 210.00199 * 8 6 4 11 11 H 1.48506 * 109.47435 * 330.00179 * 8 6 4 12 12 N 1.46505 * 109.47289 * 240.00131 * 2 1 3 13 13 C 1.46495 * 119.99640 * 300.00172 * 12 2 1 14 14 S 1.65598 * 119.99945 * 119.99523 * 12 2 1 15 15 O 1.42101 * 106.40296 * 336.46451 * 14 12 2 16 16 O 1.42098 * 106.40275 * 203.54114 * 14 12 2 17 17 N 1.65603 * 107.21755 * 90.00362 * 14 12 2 18 18 C 1.46497 * 120.00137 * 64.99636 * 17 14 12 19 19 H 1.09006 * 115.55948 * 359.31060 * 18 17 14 20 20 C 1.52998 * 117.50201 * 213.62757 * 18 17 14 21 21 C 1.52999 * 117.49955 * 145.00339 * 18 17 14 22 22 H 1.08997 * 117.51808 * 0.02562 * 21 18 17 23 23 C 1.53006 * 117.49690 * 214.97903 * 21 18 17 24 24 H 1.09000 * 109.46990 * 60.00281 * 1 2 3 25 25 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47115 * 300.00141 * 1 2 3 27 27 H 0.97000 * 119.99634 * 179.97438 * 7 6 4 28 28 H 1.09010 * 109.47014 * 269.99394 * 13 12 2 29 29 H 1.08996 * 109.47577 * 29.99571 * 13 12 2 30 30 H 1.08996 * 109.46996 * 150.00202 * 13 12 2 31 31 H 0.97005 * 120.00007 * 245.00406 * 17 14 12 32 32 H 1.08999 * 117.50182 * 145.01922 * 20 18 17 33 33 H 1.09006 * 117.49851 * 359.97438 * 20 18 17 34 34 H 1.08997 * 109.47438 * 299.98707 * 23 21 18 35 35 H 1.09002 * 109.46800 * 59.98707 * 23 21 18 36 36 H 1.08994 * 109.46790 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9952 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 16 2.9704 0.1143 -2.2863 15 8 2.6903 1.4974 -2.1192 16 8 2.8227 -0.5645 -3.5259 17 7 4.5437 -0.1041 -1.8181 18 6 5.1358 -1.4439 -1.8416 19 1 4.4729 -2.2453 -2.1681 20 6 6.1711 -1.7778 -0.7658 21 6 6.6158 -1.5558 -2.2128 22 1 7.1495 -0.6328 -2.4391 23 6 7.0523 -2.7841 -3.0139 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9040 -0.5275 4.4375 28 1 2.4158 -2.7377 -0.9717 29 1 0.6905 -2.3002 -0.9847 30 1 1.6239 -2.2851 -2.5002 31 1 5.0733 0.6552 -1.5282 32 1 6.1895 -2.7987 -0.3845 33 1 6.4121 -1.0003 -0.0407 34 1 6.8291 -3.6869 -2.4454 35 1 6.5147 -2.8094 -3.9618 36 1 8.1239 -2.7309 -3.2055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000585740941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:04 Heat of formation + Delta-G solvation = -47.450292 kcal Electronic energy + Delta-G solvation = -19090.337141 eV Core-core repulsion = 16123.528338 eV Total energy + Delta-G solvation = -2966.808803 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.04651 -36.78726 -36.40400 -35.39127 -32.53438 -32.46028 -30.03360 -27.98778 -25.81059 -25.01568 -21.94418 -20.98759 -20.57518 -18.95747 -17.45991 -16.96779 -16.58682 -16.20362 -15.39159 -14.68634 -14.01179 -13.69964 -13.56933 -13.31831 -12.99609 -12.77464 -12.34169 -12.17065 -12.07452 -11.94731 -11.71379 -11.69337 -11.61570 -11.42922 -11.25326 -11.23221 -11.04392 -10.48257 -10.14935 -9.92327 -9.60063 -9.43169 -8.73066 -8.66868 -8.12089 -6.17674 -4.18413 1.11762 3.21692 3.31184 3.34832 3.37348 3.87699 4.06541 4.32125 4.71113 4.92402 4.97868 5.04825 5.13761 5.25901 5.33576 5.55269 5.77112 5.83366 5.99156 6.05040 6.08007 6.18018 6.22805 6.32805 6.35657 6.45485 6.52587 6.54673 6.83409 7.13594 7.30317 7.39920 7.62288 8.42025 8.86427 9.43482 10.94755 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.007878 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.814316 B = 3553.130457 C = 4154.820427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.056 0.944 4 C -0.525 4.525 5 H 0.083 0.917 6 C 0.075 3.925 7 N -0.894 5.894 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.983 5.983 13 C 0.096 3.904 14 S 2.788 3.212 15 O -0.983 6.983 16 O -0.992 6.992 17 N -1.096 6.096 18 C 0.101 3.899 19 H 0.131 0.869 20 C -0.178 4.178 21 C -0.170 4.170 22 H 0.104 0.896 23 C -0.121 4.121 24 H 0.035 0.965 25 H 0.059 0.941 26 H 0.049 0.951 27 H 0.265 0.735 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.413 0.587 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 -2.499 -9.765 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.564 4.564 5 H 0.101 0.899 6 C -0.128 4.128 7 N -0.532 5.532 8 Si 0.706 3.294 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.824 5.824 13 C -0.050 4.050 14 S 2.796 3.204 15 O -0.968 6.968 16 O -0.976 6.976 17 N -0.851 5.851 18 C -0.008 4.008 19 H 0.148 0.852 20 C -0.217 4.217 21 C -0.191 4.191 22 H 0.122 0.878 23 C -0.179 4.179 24 H 0.054 0.946 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.197 -2.149 -10.409 11.831 hybrid contribution -0.221 0.892 0.990 1.350 sum 4.976 -1.258 -9.419 10.727 Atomic orbital electron populations 1.22431 0.98880 1.01332 0.99247 1.19085 0.90925 0.93354 0.83218 0.92602 1.21218 1.32568 1.14341 0.88232 0.89869 1.24894 0.95604 0.96526 0.95781 1.69873 1.45208 1.40124 0.97951 0.87029 0.80823 0.84010 0.77529 1.20309 1.22187 1.18656 1.57398 1.64641 1.21612 1.38790 1.21344 1.02212 0.81456 0.99972 1.01652 0.72453 0.72966 0.73324 1.93591 1.83654 1.32532 1.86981 1.93549 1.85932 1.76283 1.41813 1.55594 1.31947 1.13573 1.83971 1.21271 0.90728 0.85097 1.03714 0.85171 1.23534 1.03014 1.03455 0.91697 1.22836 0.97749 1.00514 0.98032 0.87821 1.21352 1.01006 0.95838 0.99697 0.94639 0.92202 0.93251 0.92496 0.93327 0.90498 0.91767 0.75397 0.88053 0.88167 0.92304 0.92051 0.92276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.41 8.65 37.16 0.32 -3.09 16 2 C 0.24 5.48 2.21 -69.08 -0.15 5.32 16 3 H 0.06 1.36 5.97 -51.93 -0.31 1.05 16 4 C -0.52 -13.66 8.95 -34.44 -0.31 -13.97 16 5 H 0.08 2.31 7.89 -52.49 -0.41 1.89 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -25.95 13.96 55.43 0.77 -25.18 16 8 Si 0.88 21.15 24.37 -169.99 -4.14 17.01 16 9 H -0.28 -6.46 6.87 56.52 0.39 -6.07 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.26 -6.20 6.53 56.52 0.37 -5.83 16 12 N -0.98 -19.30 3.12 -115.85 -0.36 -19.66 16 13 C 0.10 1.62 9.90 59.84 0.59 2.21 16 14 S 2.79 52.04 6.12 -107.50 -0.66 51.38 16 15 O -0.98 -21.14 16.70 -57.17 -0.95 -22.10 16 16 O -0.99 -19.30 16.50 -57.17 -0.94 -20.24 16 17 N -1.10 -17.22 6.10 -4.89 -0.03 -17.25 16 18 C 0.10 1.42 6.21 -67.93 -0.42 1.00 16 19 H 0.13 1.78 8.11 -51.93 -0.42 1.36 16 20 C -0.18 -2.30 10.10 -26.73 -0.27 -2.57 16 21 C -0.17 -2.00 6.33 -90.62 -0.57 -2.57 16 22 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 23 C -0.12 -1.19 10.19 37.16 0.38 -0.81 16 24 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.19 6.66 -51.93 -0.35 0.84 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 29 H 0.08 1.27 6.43 -51.93 -0.33 0.94 16 30 H 0.06 0.97 7.02 -51.93 -0.36 0.60 16 31 H 0.41 5.82 8.96 -34.47 -0.31 5.51 16 32 H 0.10 1.23 8.05 -51.93 -0.42 0.81 16 33 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.06 0.54 7.90 -51.93 -0.41 0.13 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 302.79 15.07 4.56 4.56 Total: -1.00 -31.59 302.79 -7.50 -39.09 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -5.21 Total: 4.89 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -0.53 Total: -12.51 kcal Atomic # 7 Polarization: -62.47 SS G_CDS: 0.38 Total: -62.08 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.90 Total: -42.34 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.14 Total: 17.01 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.66 Total: 51.38 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -31.59 -7.50 -39.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585740941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.360 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds