Wall clock time and date at job start Mon Mar 30 2020 04:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47163 * 2 1 4 4 C 1.50702 * 109.47290 * 119.99949 * 2 1 3 5 5 H 1.07996 * 119.99716 * 119.99824 * 4 2 1 6 6 C 1.37875 * 119.99833 * 300.00503 * 4 2 1 7 7 N 1.31513 * 119.99549 * 180.02562 * 6 4 2 8 8 Si 1.86794 * 120.00182 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47229 * 90.00422 * 8 6 4 10 10 H 1.48497 * 109.47294 * 210.00199 * 8 6 4 11 11 H 1.48506 * 109.47435 * 330.00179 * 8 6 4 12 12 N 1.46505 * 109.47289 * 240.00131 * 2 1 3 13 13 C 1.46495 * 119.99640 * 300.00172 * 12 2 1 14 14 S 1.65598 * 119.99945 * 119.99523 * 12 2 1 15 15 O 1.42101 * 106.40296 * 336.46451 * 14 12 2 16 16 O 1.42098 * 106.40275 * 203.54114 * 14 12 2 17 17 N 1.65603 * 107.21755 * 90.00362 * 14 12 2 18 18 C 1.46497 * 120.00137 * 64.99636 * 17 14 12 19 19 H 1.09006 * 115.55948 * 359.31060 * 18 17 14 20 20 C 1.52998 * 117.50201 * 213.62757 * 18 17 14 21 21 C 1.52999 * 117.49955 * 145.00339 * 18 17 14 22 22 H 1.08997 * 117.51808 * 0.02562 * 21 18 17 23 23 C 1.53006 * 117.49690 * 214.97903 * 21 18 17 24 24 H 1.09000 * 109.46990 * 60.00281 * 1 2 3 25 25 H 1.09001 * 109.47163 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47115 * 300.00141 * 1 2 3 27 27 H 0.97000 * 119.99634 * 179.97438 * 7 6 4 28 28 H 1.09010 * 109.47014 * 269.99394 * 13 12 2 29 29 H 1.08996 * 109.47577 * 29.99571 * 13 12 2 30 30 H 1.08996 * 109.46996 * 150.00202 * 13 12 2 31 31 H 0.97005 * 120.00007 * 245.00406 * 17 14 12 32 32 H 1.08999 * 117.50182 * 145.01922 * 20 18 17 33 33 H 1.09006 * 117.49851 * 359.97438 * 20 18 17 34 34 H 1.08997 * 109.47438 * 299.98707 * 23 21 18 35 35 H 1.09002 * 109.46800 * 59.98707 * 23 21 18 36 36 H 1.08994 * 109.46790 * 179.97438 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1381 -0.8591 3.5565 8 14 0.6258 1.2797 2.6541 9 1 -0.8021 0.8743 2.6993 10 1 0.9770 1.9952 3.9070 11 1 0.8489 2.1773 1.4923 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0931 -1.4280 14 16 2.9704 0.1143 -2.2863 15 8 2.6903 1.4974 -2.1192 16 8 2.8227 -0.5645 -3.5259 17 7 4.5437 -0.1041 -1.8181 18 6 5.1358 -1.4439 -1.8416 19 1 4.4729 -2.2453 -2.1681 20 6 6.1711 -1.7778 -0.7658 21 6 6.6158 -1.5558 -2.2128 22 1 7.1495 -0.6328 -2.4391 23 6 7.0523 -2.7841 -3.0139 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.9040 -0.5275 4.4375 28 1 2.4158 -2.7377 -0.9717 29 1 0.6905 -2.3002 -0.9847 30 1 1.6239 -2.2851 -2.5002 31 1 5.0733 0.6552 -1.5282 32 1 6.1895 -2.7987 -0.3845 33 1 6.4121 -1.0003 -0.0407 34 1 6.8291 -3.6869 -2.4454 35 1 6.5147 -2.8094 -3.9618 36 1 8.1239 -2.7309 -3.2055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585740941.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:04 Heat of formation + Delta-G solvation = -71.340679 kcal Electronic energy + Delta-G solvation = -19091.373106 eV Core-core repulsion = 16123.528338 eV Total energy + Delta-G solvation = -2967.844768 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.11997 -38.36137 -38.05531 -36.96057 -34.51025 -33.64829 -31.78650 -28.87674 -27.35906 -26.90661 -23.07145 -22.70348 -21.58155 -20.40632 -19.08586 -18.53459 -18.33063 -17.58260 -17.05419 -16.29608 -15.33434 -15.18948 -15.01954 -14.55907 -14.42424 -14.18487 -13.90298 -13.78672 -13.54582 -13.26796 -13.18770 -13.06893 -12.96924 -12.91851 -12.80021 -12.66874 -12.20166 -12.10771 -12.00078 -11.46717 -11.31825 -10.92242 -10.74078 -9.90539 -9.71570 -8.28050 -6.30997 -0.35791 1.30848 1.39701 1.46864 1.88680 2.32190 2.53315 2.92264 3.06742 3.37021 3.86827 3.91939 3.95699 4.01303 4.17927 4.45517 4.48075 4.65251 4.70452 4.79567 4.88422 4.94463 4.99545 5.02203 5.10878 5.16812 5.23238 5.30789 5.47510 5.49609 5.57652 5.80687 6.08303 6.36191 6.74718 7.33928 8.87277 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.007878 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.814316 B = 3553.130457 C = 4154.820427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.240 3.760 3 H 0.043 0.957 4 C -0.513 4.513 5 H 0.057 0.943 6 C 0.025 3.975 7 N -0.937 5.937 8 Si 0.925 3.075 9 H -0.261 1.261 10 H -0.298 1.298 11 H -0.255 1.255 12 N -0.989 5.989 13 C 0.091 3.909 14 S 2.804 3.196 15 O -1.012 7.012 16 O -0.998 6.998 17 N -1.092 6.092 18 C 0.071 3.929 19 H 0.134 0.866 20 C -0.183 4.183 21 C -0.148 4.148 22 H 0.112 0.888 23 C -0.122 4.122 24 H 0.056 0.944 25 H 0.071 0.929 26 H 0.042 0.958 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.420 0.580 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.660 -2.569 -11.023 12.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.134 3.866 3 H 0.061 0.939 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.174 4.174 7 N -0.577 5.577 8 Si 0.752 3.248 9 H -0.187 1.187 10 H -0.226 1.226 11 H -0.180 1.180 12 N -0.829 5.829 13 C -0.054 4.054 14 S 2.812 3.188 15 O -0.997 6.997 16 O -0.982 6.982 17 N -0.849 5.849 18 C -0.037 4.037 19 H 0.151 0.849 20 C -0.222 4.222 21 C -0.169 4.169 22 H 0.130 0.870 23 C -0.180 4.180 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.254 0.746 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.213 -2.231 -11.693 12.995 hybrid contribution -0.120 0.833 1.326 1.570 sum 5.093 -1.398 -10.367 11.635 Atomic orbital electron populations 1.22392 0.97300 1.02410 0.99906 1.18857 0.92181 0.92470 0.83060 0.93921 1.21386 1.31180 1.13176 0.89494 0.92431 1.25560 0.97042 0.99094 0.95655 1.69991 1.47254 1.42019 0.98471 0.86231 0.80112 0.81076 0.77350 1.18704 1.22581 1.17954 1.57360 1.65343 1.22624 1.37620 1.21524 1.02442 0.80070 1.01388 1.01054 0.72695 0.72001 0.73026 1.93545 1.84451 1.34371 1.87328 1.93536 1.86338 1.76248 1.42068 1.55328 1.30956 1.14731 1.83910 1.21568 0.92161 0.84270 1.05655 0.84873 1.23564 1.02780 1.03571 0.92283 1.22940 0.95365 1.01728 0.96888 0.87006 1.21409 1.02112 0.94988 0.99446 0.92520 0.91038 0.93980 0.92535 0.92961 0.90266 0.89738 0.74581 0.87330 0.89116 0.91727 0.91817 0.90567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.54 8.65 71.98 0.62 -5.91 16 2 C 0.24 10.77 2.21 44.25 0.10 10.87 16 3 H 0.04 2.05 5.97 -2.39 -0.01 2.03 16 4 C -0.51 -26.71 8.95 25.60 0.23 -26.48 16 5 H 0.06 3.24 7.89 -2.91 -0.02 3.21 16 6 C 0.03 1.39 5.45 84.65 0.46 1.85 16 7 N -0.94 -55.11 13.96 21.45 0.30 -54.81 16 8 Si 0.92 43.04 24.37 68.60 1.67 44.71 16 9 H -0.26 -11.45 6.87 99.48 0.68 -10.77 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 11 H -0.26 -11.51 6.53 99.48 0.65 -10.86 16 12 N -0.99 -37.68 3.12 -520.44 -1.62 -39.31 16 13 C 0.09 2.93 9.90 127.77 1.26 4.19 16 14 S 2.80 101.64 6.12 -56.49 -0.35 101.29 16 15 O -1.01 -42.74 16.70 -128.00 -2.14 -44.87 16 16 O -1.00 -37.19 16.50 -128.00 -2.11 -39.30 16 17 N -1.09 -33.34 6.10 -169.39 -1.03 -34.37 16 18 C 0.07 1.93 6.21 44.99 0.28 2.21 16 19 H 0.13 3.47 8.11 -2.38 -0.02 3.45 16 20 C -0.18 -4.55 10.10 30.59 0.31 -4.24 16 21 C -0.15 -3.18 6.33 -10.79 -0.07 -3.24 16 22 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 23 C -0.12 -2.07 10.19 71.98 0.73 -1.34 16 24 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.07 2.69 6.66 -2.39 -0.02 2.67 16 26 H 0.04 1.76 3.27 -2.39 -0.01 1.75 16 27 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.61 16 29 H 0.08 2.49 6.43 -2.39 -0.02 2.48 16 30 H 0.08 2.37 7.02 -2.39 -0.02 2.35 16 31 H 0.42 11.56 8.96 -96.74 -0.87 10.69 16 32 H 0.11 2.51 8.05 -2.39 -0.02 2.49 16 33 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.06 1.03 7.90 -2.39 -0.02 1.01 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -65.92 302.79 -1.22 -67.13 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.14 Total: 21.63 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 3.93 Total: -22.10 kcal Atomic # 7 Polarization: -126.14 SS G_CDS: -2.36 Total: -128.49 kcal Atomic # 8 Polarization: -79.92 SS G_CDS: -4.25 Total: -84.17 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.67 Total: 44.71 kcal Atomic # 16 Polarization: 101.64 SS G_CDS: -0.35 Total: 101.29 kcal Total: -65.92 -1.22 -67.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585740941.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.207 kcal (2) G-P(sol) polarization free energy of solvation -65.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds