Wall clock time and date at job start Mon Mar 30 2020 05:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46495 * 109.47577 * 2 1 4 4 C 1.46500 * 119.99960 * 84.99744 * 3 2 1 5 5 C 1.50706 * 109.46953 * 275.00070 * 4 3 2 6 6 H 1.07999 * 120.00193 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99398 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99350 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00608 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47326 * 270.00340 * 9 7 5 11 11 H 1.48506 * 109.46545 * 30.00090 * 9 7 5 12 12 H 1.48498 * 109.47210 * 149.99801 * 9 7 5 13 13 S 1.65602 * 120.00128 * 265.00587 * 3 2 1 14 14 O 1.42104 * 106.40222 * 23.53223 * 13 3 2 15 15 O 1.42099 * 106.40467 * 156.45737 * 13 3 2 16 16 N 1.65604 * 107.21312 * 269.99490 * 13 3 2 17 17 C 1.46492 * 120.00162 * 65.00179 * 16 13 3 18 18 H 1.09006 * 115.55183 * 359.41452 * 17 16 13 19 19 C 1.53004 * 117.49998 * 213.74706 * 17 16 13 20 20 C 1.53000 * 117.50164 * 145.08314 * 17 16 13 21 21 H 1.08998 * 117.49843 * 0.02562 * 20 17 16 22 22 C 1.53005 * 117.50173 * 214.97580 * 20 17 16 23 23 H 1.09002 * 109.47265 * 60.00347 * 1 2 3 24 24 H 1.09003 * 109.47280 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47474 * 300.00166 * 1 2 3 26 26 H 1.09010 * 109.47107 * 239.99888 * 2 1 3 27 27 H 1.08995 * 109.47150 * 120.00061 * 2 1 3 28 28 H 1.09000 * 109.47175 * 155.00500 * 4 3 2 29 29 H 1.08993 * 109.47452 * 35.00290 * 4 3 2 30 30 H 0.97005 * 119.99661 * 179.97438 * 8 7 5 31 31 H 0.96999 * 120.00092 * 244.99637 * 16 13 3 32 32 H 1.09002 * 117.49381 * 359.97438 * 19 17 16 33 33 H 1.08994 * 117.50217 * 144.99589 * 19 17 16 34 34 H 1.09000 * 109.46672 * 60.00235 * 22 20 17 35 35 H 1.09001 * 109.47127 * 179.97438 * 22 20 17 36 36 H 1.08994 * 109.47239 * 300.00063 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 1.2639 5 6 0.8360 2.7288 1.6355 6 1 -0.0228 2.5942 0.9946 7 6 0.7224 3.4673 2.7944 8 7 -0.4316 4.0081 3.1189 9 14 2.2076 3.6995 3.9033 10 1 2.2561 2.6017 4.9021 11 1 3.4456 3.6780 3.0835 12 1 2.1017 5.0036 4.6058 13 16 2.4121 2.1202 -1.4287 14 8 1.6868 1.4414 -2.4448 15 8 2.3057 3.5186 -1.1998 16 7 4.0144 1.8136 -1.7137 17 6 4.4656 0.4413 -1.9569 18 1 3.6882 -0.3221 -1.9239 19 6 5.8569 0.0549 -1.4508 20 6 5.6115 0.2399 -2.9505 21 1 6.0300 1.1286 -3.4229 22 6 5.5789 -1.0177 -3.8213 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8901 27 1 1.8932 -0.5138 0.8899 28 1 2.9080 2.8917 1.1513 29 1 2.4689 1.4183 2.0480 30 1 -0.5116 4.5273 3.9344 31 1 4.6541 2.5427 -1.7197 32 1 6.4366 0.8220 -0.9374 33 1 5.9948 -0.9625 -1.0850 34 1 4.6711 -1.0183 -4.4246 35 1 6.4501 -1.0288 -4.4763 36 1 5.5920 -1.9016 -3.1836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000585741079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:17 Heat of formation + Delta-G solvation = -81.261232 kcal Electronic energy + Delta-G solvation = -18882.360679 eV Core-core repulsion = 15914.085724 eV Total energy + Delta-G solvation = -2968.274955 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.12726 -38.26747 -37.77254 -36.87464 -34.58787 -33.66480 -31.72127 -29.09395 -28.86592 -24.35605 -23.39736 -23.00789 -21.61347 -20.52535 -19.06727 -18.66567 -18.22125 -17.63844 -16.85524 -16.08905 -15.40874 -15.13514 -14.80333 -14.58670 -14.54091 -14.29127 -13.90280 -13.80009 -13.21888 -13.19038 -13.12654 -13.06256 -12.87723 -12.85638 -12.72213 -12.64263 -12.22688 -12.12896 -11.92697 -11.72318 -11.47089 -10.91181 -10.73042 -9.92419 -9.77865 -8.24138 -6.28339 -0.38775 1.37536 1.42012 1.50805 1.98823 2.38276 2.59875 2.92460 3.09071 3.38773 3.81284 3.85755 3.96302 4.05279 4.18173 4.45336 4.49432 4.51260 4.69587 4.86439 4.92917 4.96463 5.00158 5.01977 5.08285 5.25795 5.29361 5.41739 5.49045 5.52992 5.56547 5.79148 6.07896 6.36631 6.75597 7.33692 8.93072 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025898 B = 0.006756 C = 0.006302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.900378 B = 4143.282355 C = 4441.745559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.126 3.874 3 N -0.991 5.991 4 C 0.234 3.766 5 C -0.534 4.534 6 H 0.035 0.965 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.943 3.057 10 H -0.255 1.255 11 H -0.242 1.242 12 H -0.288 1.288 13 S 2.796 3.204 14 O -1.005 7.005 15 O -1.012 7.012 16 N -1.090 6.090 17 C 0.060 3.940 18 H 0.135 0.865 19 C -0.168 4.168 20 C -0.159 4.159 21 H 0.107 0.893 22 C -0.124 4.124 23 H 0.031 0.969 24 H 0.087 0.913 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.265 0.735 31 H 0.421 0.579 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.836 -12.597 -8.592 21.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.001 3.999 3 N -0.831 5.831 4 C 0.109 3.891 5 C -0.573 4.573 6 H 0.054 0.946 7 C -0.192 4.192 8 N -0.591 5.591 9 Si 0.765 3.235 10 H -0.179 1.179 11 H -0.165 1.165 12 H -0.214 1.214 13 S 2.805 3.195 14 O -0.989 6.989 15 O -0.996 6.996 16 N -0.850 5.850 17 C -0.048 4.048 18 H 0.153 0.847 19 C -0.208 4.208 20 C -0.180 4.180 21 H 0.125 0.875 22 C -0.181 4.181 23 H 0.050 0.950 24 H 0.106 0.894 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.116 0.884 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.257 0.743 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 15.007 -12.134 -9.024 21.304 hybrid contribution 0.195 0.983 0.844 1.310 sum 15.202 -11.151 -8.180 20.551 Atomic orbital electron populations 1.22236 0.97457 1.02330 1.01131 1.21347 0.94045 0.80698 1.03831 1.57456 1.79234 1.24117 1.22336 1.19231 0.95290 0.91800 0.82741 1.21757 0.96761 1.31748 1.07062 0.94626 1.25904 0.99119 0.94644 0.99520 1.70079 1.26935 1.36118 1.25995 0.85796 0.80198 0.78235 0.79277 1.17903 1.16495 1.21412 1.01283 0.73489 0.71957 0.72800 1.93525 1.71519 1.76326 1.57491 1.93580 1.86307 1.33547 1.86178 1.55404 1.27954 1.14505 1.87087 1.21724 0.93594 0.82890 1.06543 0.84703 1.23688 0.96961 1.04225 0.95886 1.22938 1.01341 1.01382 0.92331 0.87461 1.21411 1.02445 0.94959 0.99305 0.94977 0.89426 0.93605 0.88968 0.88386 0.94885 0.92628 0.92576 0.74332 0.88058 0.86071 0.92514 0.90859 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.17 9.83 71.98 0.71 -5.46 16 2 C 0.13 3.93 6.09 86.38 0.53 4.45 16 3 N -0.99 -38.19 2.86 -519.86 -1.48 -39.67 16 4 C 0.23 10.53 4.19 85.63 0.36 10.89 16 5 C -0.53 -30.55 8.97 25.60 0.23 -30.32 16 6 H 0.04 2.30 7.13 -2.91 -0.02 2.28 16 7 C 0.01 0.31 5.47 84.66 0.46 0.77 16 8 N -0.95 -60.18 13.96 21.45 0.30 -59.88 16 9 Si 0.94 42.66 27.47 68.60 1.88 44.54 16 10 H -0.25 -10.62 7.11 99.48 0.71 -9.92 16 11 H -0.24 -9.92 6.54 99.48 0.65 -9.27 16 12 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 13 S 2.80 107.30 6.03 -56.49 -0.34 106.96 16 14 O -1.01 -41.11 16.87 -128.00 -2.16 -43.27 16 15 O -1.01 -48.65 17.11 -128.00 -2.19 -50.84 16 16 N -1.09 -29.17 6.10 -169.39 -1.03 -30.21 16 17 C 0.06 1.26 6.21 44.99 0.28 1.54 16 18 H 0.14 2.70 6.90 -2.38 -0.02 2.69 16 19 C -0.17 -2.56 10.11 30.62 0.31 -2.25 16 20 C -0.16 -2.60 6.34 -10.77 -0.07 -2.67 16 21 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 22 C -0.12 -1.63 10.19 71.98 0.73 -0.89 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 25 H 0.04 1.97 6.59 -2.39 -0.02 1.95 16 26 H 0.09 2.30 6.40 -2.38 -0.02 2.29 16 27 H 0.10 2.57 8.00 -2.39 -0.02 2.55 16 28 H 0.03 1.49 6.67 -2.39 -0.02 1.48 16 29 H 0.06 2.22 7.43 -2.39 -0.02 2.21 16 30 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 31 H 0.42 9.77 8.96 -96.74 -0.87 8.90 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.12 1.39 8.05 -2.39 -0.02 1.37 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.76 7.90 -2.39 -0.02 0.74 16 Total: -1.00 -76.88 309.72 -1.33 -78.22 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.15 Total: 18.10 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: 3.54 Total: -23.94 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -2.22 Total: -129.76 kcal Atomic # 8 Polarization: -89.76 SS G_CDS: -4.35 Total: -94.11 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 1.88 Total: 44.54 kcal Atomic # 16 Polarization: 107.30 SS G_CDS: -0.34 Total: 106.96 kcal Total: -76.88 -1.33 -78.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000585741079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.046 kcal (2) G-P(sol) polarization free energy of solvation -76.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds