Wall clock time and date at job start Mon Mar 30 2020 04:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47189 * 2 1 4 4 N 1.46504 * 109.46756 * 179.97438 * 3 2 1 5 5 C 1.46495 * 119.99795 * 274.99781 * 4 3 2 6 6 S 1.65596 * 119.99714 * 95.00113 * 4 3 2 7 7 O 1.42103 * 106.40705 * 336.45792 * 6 4 3 8 8 O 1.42103 * 106.40076 * 203.53369 * 6 4 3 9 9 N 1.65603 * 107.22013 * 89.99795 * 6 4 3 10 10 C 1.47588 * 134.49193 * 89.99472 * 9 6 4 11 11 C 1.53940 * 86.11335 * 155.36310 * 10 9 6 12 12 C 1.50706 * 113.74114 * 137.95690 * 11 10 9 13 13 H 1.07997 * 119.99944 * 1.91819 * 12 11 10 14 14 C 1.37875 * 119.99832 * 181.92343 * 12 11 10 15 15 N 1.31514 * 119.99723 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 120.00382 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47313 * 90.00052 * 16 14 12 18 18 H 1.48506 * 109.47569 * 210.00014 * 16 14 12 19 19 H 1.48502 * 109.47443 * 330.00414 * 16 14 12 20 20 C 1.47811 * 134.45897 * 269.86926 * 9 6 4 21 21 H 1.09004 * 109.46872 * 300.00328 * 1 2 3 22 22 H 1.09002 * 109.47030 * 59.99915 * 1 2 3 23 23 H 1.08993 * 109.47732 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46958 * 240.00102 * 2 1 3 25 25 H 1.09002 * 109.47030 * 120.00085 * 2 1 3 26 26 H 1.08998 * 109.47087 * 60.00181 * 3 2 1 27 27 H 1.09002 * 109.47204 * 299.99978 * 3 2 1 28 28 H 1.08997 * 109.47565 * 269.99945 * 5 4 3 29 29 H 1.08996 * 109.47596 * 30.00851 * 5 4 3 30 30 H 1.09008 * 109.46940 * 150.00198 * 5 4 3 31 31 H 1.08999 * 113.76895 * 41.06190 * 10 9 6 32 32 H 1.09000 * 113.76895 * 269.66584 * 10 9 6 33 33 H 1.09002 * 113.74158 * 269.15035 * 11 10 9 34 34 H 0.97001 * 120.00532 * 179.97438 * 15 14 12 35 35 H 1.09000 * 113.76749 * 90.37012 * 20 9 6 36 36 H 1.09001 * 113.83336 * 318.91526 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2370 1.3320 1.2648 6 16 4.3336 1.5671 -1.4277 7 8 3.4523 1.1094 -2.4442 8 8 5.6164 1.0006 -1.1983 9 7 4.5789 3.1799 -1.7130 10 6 5.6436 4.1413 -1.3663 11 6 5.1748 4.9430 -2.5940 12 6 5.1153 6.4307 -2.3606 13 1 5.4184 6.8404 -1.4085 14 6 4.6738 7.2685 -3.3626 15 7 4.6213 8.5667 -3.1588 16 14 4.1501 6.5599 -5.0097 17 1 2.6993 6.2450 -4.9743 18 1 4.4152 7.5520 -6.0824 19 1 4.9193 5.3191 -5.2819 20 6 3.8199 4.2335 -2.4192 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 4.4186 2.3283 1.6678 29 1 3.6477 0.7540 1.9766 30 1 5.1895 0.8313 1.0907 31 1 6.6506 3.7359 -1.4646 32 1 5.4808 4.6541 -0.4183 33 1 5.6934 4.6779 -3.5154 34 1 4.3111 9.1563 -3.8638 35 1 3.1203 4.7734 -1.7812 36 1 3.3736 3.9015 -3.3566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594825210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:36 Heat of formation + Delta-G solvation = -47.615043 kcal Electronic energy + Delta-G solvation = -18725.898685 eV Core-core repulsion = 15759.082738 eV Total energy + Delta-G solvation = -2966.815947 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.26741 -37.09589 -36.82726 -35.52269 -32.93581 -32.56859 -28.78188 -27.49135 -25.45198 -24.81416 -24.24912 -21.62319 -19.62041 -18.52987 -17.45119 -17.30377 -16.78062 -16.21393 -14.95263 -14.77561 -14.49130 -14.46629 -13.75185 -13.36430 -13.13622 -12.91891 -12.69338 -12.37628 -12.26383 -12.11373 -11.88943 -11.76396 -11.59635 -11.56692 -11.48634 -11.32562 -10.94907 -10.72770 -10.39592 -10.01285 -9.57327 -9.27682 -9.02251 -8.67620 -8.41852 -6.18855 -4.20795 0.85101 3.08270 3.24376 3.33334 3.36816 3.77456 4.33655 4.45879 4.70605 4.87515 4.97895 5.08808 5.20110 5.34087 5.42786 5.51956 5.54979 5.69441 5.73694 5.81917 5.84752 5.88583 6.04808 6.09422 6.18494 6.20852 6.23171 6.40594 6.45251 6.76038 7.19168 7.35476 7.58207 8.37844 8.83595 9.42495 10.93157 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026900 B = 0.006072 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.632156 B = 4610.286000 C = 4893.840168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.126 3.874 4 N -1.016 6.016 5 C 0.088 3.912 6 S 2.786 3.214 7 O -0.980 6.980 8 O -0.983 6.983 9 N -1.041 6.041 10 C 0.136 3.864 11 C -0.007 4.007 12 C -0.512 4.512 13 H 0.080 0.920 14 C 0.077 3.923 15 N -0.894 5.894 16 Si 0.869 3.131 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.261 1.261 20 C 0.113 3.887 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.068 0.932 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.266 0.734 35 H 0.082 0.918 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.318 -13.389 7.719 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.000 4.000 4 N -0.854 5.854 5 C -0.058 4.058 6 S 2.798 3.202 7 O -0.964 6.964 8 O -0.968 6.968 9 N -0.884 5.884 10 C 0.011 3.989 11 C -0.029 4.029 12 C -0.550 4.550 13 H 0.098 0.902 14 C -0.126 4.126 15 N -0.531 5.531 16 Si 0.696 3.304 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.185 1.185 20 C -0.013 4.013 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.120 -14.199 7.165 16.708 hybrid contribution -0.616 -0.035 -0.482 0.783 sum -5.735 -14.234 6.683 16.738 Atomic orbital electron populations 1.21693 0.95120 1.01843 1.02058 1.21977 0.96290 0.97515 1.02670 1.21267 0.78626 0.96893 1.03193 1.58095 1.14896 1.89041 1.23410 1.21484 0.96936 1.01773 0.85601 1.01826 0.72771 0.72933 0.72649 1.93565 1.67005 1.79813 1.56026 1.93546 1.40667 1.76622 1.85945 1.60717 1.34663 1.24486 1.68504 1.22831 0.89311 0.86459 1.00251 1.21097 0.91464 0.95631 0.94700 1.20889 1.44627 0.87855 1.01667 0.90236 1.24980 0.94626 0.94595 0.98413 1.69890 1.46442 1.02826 1.33988 0.86957 0.79808 0.79575 0.84099 1.19848 1.21184 1.18535 1.23526 0.98609 0.84668 0.94461 0.92639 0.92286 0.92562 0.91287 0.91798 0.90611 0.90178 0.92791 0.91226 0.90299 0.91379 0.90418 0.91865 0.92415 0.89953 0.92125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.15 -1.59 6.26 -26.73 -0.17 -1.76 16 3 C 0.13 1.52 5.32 -4.04 -0.02 1.50 16 4 N -1.02 -14.03 3.24 -121.76 -0.39 -14.42 16 5 C 0.09 0.99 10.68 59.84 0.64 1.62 16 6 S 2.79 49.26 6.61 -107.50 -0.71 48.55 16 7 O -0.98 -19.41 17.08 -57.17 -0.98 -20.38 16 8 O -0.98 -19.24 16.71 -57.17 -0.96 -20.19 16 9 N -1.04 -19.39 4.18 -118.64 -0.50 -19.89 16 10 C 0.14 2.56 8.53 -2.97 -0.03 2.54 16 11 C -0.01 -0.16 2.90 -90.85 -0.26 -0.42 16 12 C -0.51 -13.16 9.33 -34.44 -0.32 -13.48 16 13 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 14 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.89 -25.76 13.96 55.43 0.77 -24.98 16 16 Si 0.87 20.34 26.96 -169.99 -4.58 15.75 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.26 -5.91 6.29 56.52 0.36 -5.56 16 20 C 0.11 2.26 7.71 -2.84 -0.02 2.24 16 21 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.08 0.76 8.11 -51.93 -0.42 0.33 16 27 H 0.08 1.04 7.61 -51.93 -0.40 0.64 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.08 0.93 7.02 -51.92 -0.36 0.57 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 33 H 0.06 1.42 6.70 -51.93 -0.35 1.07 16 34 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.08 1.58 8.09 -51.93 -0.42 1.16 16 36 H 0.06 1.20 7.97 -51.93 -0.41 0.78 16 LS Contribution 310.38 15.07 4.68 4.68 Total: -1.00 -30.93 310.38 -8.34 -39.27 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.76 Total: -1.63 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: 0.09 Total: -6.76 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.12 Total: -59.29 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.93 Total: -40.58 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.58 Total: 15.75 kcal Atomic # 16 Polarization: 49.26 SS G_CDS: -0.71 Total: 48.55 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.93 -8.34 -39.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.340 kcal (2) G-P(sol) polarization free energy of solvation -30.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds