Wall clock time and date at job start Mon Mar 30 2020 04:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47189 * 2 1 4 4 N 1.46504 * 109.46756 * 179.97438 * 3 2 1 5 5 C 1.46495 * 119.99795 * 274.99781 * 4 3 2 6 6 S 1.65596 * 119.99714 * 95.00113 * 4 3 2 7 7 O 1.42103 * 106.40705 * 336.45792 * 6 4 3 8 8 O 1.42103 * 106.40076 * 203.53369 * 6 4 3 9 9 N 1.65603 * 107.22013 * 89.99795 * 6 4 3 10 10 C 1.47588 * 134.49193 * 89.99472 * 9 6 4 11 11 C 1.53940 * 86.11335 * 155.36310 * 10 9 6 12 12 C 1.50706 * 113.74114 * 137.95690 * 11 10 9 13 13 H 1.07997 * 119.99944 * 1.91819 * 12 11 10 14 14 C 1.37875 * 119.99832 * 181.92343 * 12 11 10 15 15 N 1.31514 * 119.99723 * 179.97438 * 14 12 11 16 16 Si 1.86791 * 120.00382 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47313 * 90.00052 * 16 14 12 18 18 H 1.48506 * 109.47569 * 210.00014 * 16 14 12 19 19 H 1.48502 * 109.47443 * 330.00414 * 16 14 12 20 20 C 1.47811 * 134.45897 * 269.86926 * 9 6 4 21 21 H 1.09004 * 109.46872 * 300.00328 * 1 2 3 22 22 H 1.09002 * 109.47030 * 59.99915 * 1 2 3 23 23 H 1.08993 * 109.47732 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46958 * 240.00102 * 2 1 3 25 25 H 1.09002 * 109.47030 * 120.00085 * 2 1 3 26 26 H 1.08998 * 109.47087 * 60.00181 * 3 2 1 27 27 H 1.09002 * 109.47204 * 299.99978 * 3 2 1 28 28 H 1.08997 * 109.47565 * 269.99945 * 5 4 3 29 29 H 1.08996 * 109.47596 * 30.00851 * 5 4 3 30 30 H 1.09008 * 109.46940 * 150.00198 * 5 4 3 31 31 H 1.08999 * 113.76895 * 41.06190 * 10 9 6 32 32 H 1.09000 * 113.76895 * 269.66584 * 10 9 6 33 33 H 1.09002 * 113.74158 * 269.15035 * 11 10 9 34 34 H 0.97001 * 120.00532 * 179.97438 * 15 14 12 35 35 H 1.09000 * 113.76749 * 90.37012 * 20 9 6 36 36 H 1.09001 * 113.83336 * 318.91526 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.2370 1.3320 1.2648 6 16 4.3336 1.5671 -1.4277 7 8 3.4523 1.1094 -2.4442 8 8 5.6164 1.0006 -1.1983 9 7 4.5789 3.1799 -1.7130 10 6 5.6436 4.1413 -1.3663 11 6 5.1748 4.9430 -2.5940 12 6 5.1153 6.4307 -2.3606 13 1 5.4184 6.8404 -1.4085 14 6 4.6738 7.2685 -3.3626 15 7 4.6213 8.5667 -3.1588 16 14 4.1501 6.5599 -5.0097 17 1 2.6993 6.2450 -4.9743 18 1 4.4152 7.5520 -6.0824 19 1 4.9193 5.3191 -5.2819 20 6 3.8199 4.2335 -2.4192 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9563 -0.8900 28 1 4.4186 2.3283 1.6678 29 1 3.6477 0.7540 1.9766 30 1 5.1895 0.8313 1.0907 31 1 6.6506 3.7359 -1.4646 32 1 5.4808 4.6541 -0.4183 33 1 5.6934 4.6779 -3.5154 34 1 4.3111 9.1563 -3.8638 35 1 3.1203 4.7734 -1.7812 36 1 3.3736 3.9015 -3.3566 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825210.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:36 Heat of formation + Delta-G solvation = -69.895790 kcal Electronic energy + Delta-G solvation = -18726.864851 eV Core-core repulsion = 15759.082738 eV Total energy + Delta-G solvation = -2967.782113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.86850 -38.45852 -37.92811 -37.00584 -34.58917 -33.80647 -30.54424 -28.36322 -27.00248 -26.26332 -25.58601 -22.49899 -21.33363 -19.84822 -19.15083 -18.77055 -18.33032 -17.44217 -16.48709 -16.06772 -15.76925 -15.57644 -15.14070 -14.97968 -14.54720 -14.14580 -13.95537 -13.81357 -13.48707 -13.42753 -13.31554 -13.24563 -13.08019 -12.78628 -12.67590 -12.37642 -12.26995 -12.13371 -11.81605 -11.58435 -11.30118 -11.15669 -10.68441 -10.18592 -9.86976 -8.25623 -6.30398 -0.52985 1.39092 1.43558 1.51267 1.78629 2.38470 2.42702 3.02067 3.12407 3.71266 3.94713 4.03535 4.13447 4.16525 4.39216 4.47158 4.51332 4.62933 4.65713 4.68011 4.72306 4.83507 4.90917 4.91760 4.95250 5.01129 5.15476 5.28806 5.40018 5.43444 5.65204 5.66416 5.77413 6.32888 6.75969 7.36191 8.89736 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026900 B = 0.006072 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.632156 B = 4610.286000 C = 4893.840168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.118 3.882 4 N -1.010 6.010 5 C 0.080 3.920 6 S 2.801 3.199 7 O -1.003 7.003 8 O -1.003 7.003 9 N -1.044 6.044 10 C 0.144 3.856 11 C -0.023 4.023 12 C -0.506 4.506 13 H 0.050 0.950 14 C 0.026 3.974 15 N -0.943 5.943 16 Si 0.921 3.079 17 H -0.261 1.261 18 H -0.288 1.288 19 H -0.249 1.249 20 C 0.118 3.882 21 H 0.071 0.929 22 H 0.050 0.950 23 H 0.064 0.936 24 H 0.045 0.955 25 H 0.079 0.921 26 H 0.104 0.896 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.266 0.734 35 H 0.089 0.911 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -15.096 8.615 18.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.184 4.184 3 C -0.007 4.007 4 N -0.851 5.851 5 C -0.064 4.064 6 S 2.813 3.187 7 O -0.987 6.987 8 O -0.988 6.988 9 N -0.886 5.886 10 C 0.019 3.981 11 C -0.044 4.044 12 C -0.544 4.544 13 H 0.068 0.932 14 C -0.173 4.173 15 N -0.582 5.582 16 Si 0.746 3.254 17 H -0.186 1.186 18 H -0.214 1.214 19 H -0.173 1.173 20 C -0.008 4.008 21 H 0.090 0.910 22 H 0.069 0.931 23 H 0.084 0.916 24 H 0.063 0.937 25 H 0.098 0.902 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.107 0.893 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.072 -15.920 8.061 18.849 hybrid contribution -0.298 0.447 -0.630 0.828 sum -6.370 -15.473 7.431 18.308 Atomic orbital electron populations 1.21690 0.93657 1.02647 1.02520 1.21977 0.97575 0.96565 1.02285 1.21524 0.77273 0.97933 1.03988 1.57814 1.15717 1.88538 1.23030 1.21732 0.96936 1.02987 0.84781 1.01157 0.72247 0.72221 0.73043 1.93532 1.67414 1.80002 1.57789 1.93518 1.42059 1.76772 1.86403 1.60593 1.34402 1.24530 1.69041 1.22765 0.90090 0.85970 0.99285 1.21105 0.93531 0.93625 0.96169 1.21080 1.43077 0.90040 1.00245 0.93167 1.25701 0.95065 0.94704 1.01841 1.70018 1.48679 1.04295 1.35240 0.86102 0.80170 0.79159 0.79999 1.18583 1.21448 1.17288 1.23313 0.97478 0.84889 0.95092 0.90965 0.93051 0.91647 0.93653 0.90219 0.87807 0.91405 0.91743 0.88098 0.91091 0.90160 0.89289 0.92259 0.92446 0.89269 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.14 -2.81 6.26 30.59 0.19 -2.62 16 3 C 0.12 2.53 5.32 86.38 0.46 2.99 16 4 N -1.01 -25.40 3.24 -539.13 -1.75 -27.15 16 5 C 0.08 1.55 10.68 127.77 1.36 2.92 16 6 S 2.80 94.70 6.61 -56.49 -0.37 94.33 16 7 O -1.00 -38.64 17.08 -128.00 -2.19 -40.82 16 8 O -1.00 -37.80 16.71 -128.00 -2.14 -39.94 16 9 N -1.04 -37.19 4.18 -529.25 -2.21 -39.40 16 10 C 0.14 5.20 8.53 86.48 0.74 5.94 16 11 C -0.02 -0.98 2.90 -10.88 -0.03 -1.01 16 12 C -0.51 -26.18 9.33 25.60 0.24 -25.94 16 13 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 14 C 0.03 1.38 5.47 84.65 0.46 1.84 16 15 N -0.94 -55.38 13.96 21.45 0.30 -55.08 16 16 Si 0.92 41.56 26.96 68.60 1.85 43.41 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 18 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 19 H -0.25 -10.66 6.29 99.48 0.63 -10.03 16 20 C 0.12 4.55 7.71 86.44 0.67 5.22 16 21 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 22 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 24 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 26 H 0.10 1.67 8.11 -2.39 -0.02 1.65 16 27 H 0.07 1.63 7.61 -2.39 -0.02 1.61 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.34 8.07 -2.39 -0.02 1.32 16 30 H 0.07 1.51 7.02 -2.38 -0.02 1.49 16 31 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.09 3.01 8.09 -2.39 -0.02 2.99 16 33 H 0.06 2.60 6.70 -2.39 -0.02 2.59 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.09 3.29 8.09 -2.39 -0.02 3.28 16 36 H 0.06 2.42 7.97 -2.39 -0.02 2.40 16 Total: -1.00 -66.18 310.38 -0.74 -66.92 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.96 Total: 9.96 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: 4.80 Total: -12.23 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -3.66 Total: -121.63 kcal Atomic # 8 Polarization: -76.44 SS G_CDS: -4.33 Total: -80.77 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.85 Total: 43.41 kcal Atomic # 16 Polarization: 94.70 SS G_CDS: -0.37 Total: 94.33 kcal Total: -66.18 -0.74 -66.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825210.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.974 kcal (2) G-P(sol) polarization free energy of solvation -66.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds