Wall clock time and date at job start Mon Mar 30 2020 05:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47099 * 2 1 4 4 C 1.50700 * 109.47208 * 240.00027 * 2 1 3 5 5 H 1.07997 * 119.99953 * 240.00499 * 4 2 1 6 6 C 1.37879 * 119.99880 * 59.99754 * 4 2 1 7 7 N 1.31521 * 120.00028 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46890 * 89.99883 * 8 6 4 10 10 H 1.48499 * 109.47463 * 210.00188 * 8 6 4 11 11 H 1.48502 * 109.46895 * 330.00372 * 8 6 4 12 12 C 1.50699 * 109.47106 * 119.99925 * 2 1 3 13 13 O 1.21276 * 119.99731 * 120.00278 * 12 2 1 14 14 N 1.34771 * 120.00361 * 300.00076 * 12 2 1 15 15 C 1.39439 * 120.00388 * 184.57934 * 14 12 2 16 16 C 1.39128 * 119.93004 * 144.85461 * 15 14 12 17 17 C 1.37676 * 120.07470 * 180.23120 * 16 15 14 18 18 C 1.39750 * 119.92160 * 359.52063 * 17 16 15 19 19 C 1.47598 * 120.06836 * 180.23176 * 18 17 16 20 20 N 1.34777 * 120.00221 * 0.25082 * 19 18 17 21 21 O 1.21592 * 119.99807 * 180.24643 * 19 18 17 22 22 C 1.39742 * 119.85456 * 0.47716 * 18 17 16 23 23 C 1.37666 * 119.92814 * 359.75200 * 22 18 17 24 24 H 1.09004 * 109.46671 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47179 * 299.99701 * 1 2 3 26 26 H 1.08999 * 109.47178 * 59.99980 * 1 2 3 27 27 H 0.96994 * 120.00042 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99754 * 4.58019 * 14 12 2 29 29 H 1.07997 * 119.96414 * 359.95674 * 16 15 14 30 30 H 1.08001 * 120.03236 * 179.74276 * 17 16 15 31 31 H 0.97000 * 119.99673 * 359.97438 * 20 19 18 32 32 H 0.96996 * 119.99969 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.03331 * 179.73166 * 22 18 17 34 34 H 1.08001 * 119.96370 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.2483 -0.8488 3.5915 16 6 2.5576 -0.0729 4.7041 17 6 3.0968 -0.6603 5.8265 18 6 3.3240 -2.0390 5.8509 19 6 3.8971 -2.6729 7.0544 20 7 4.1973 -1.9227 8.1331 21 8 4.0985 -3.8719 7.0726 22 6 3.0122 -2.8154 4.7316 23 6 2.4777 -2.2210 3.6108 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1614 -3.4843 28 1 1.0958 0.4979 2.5447 29 1 2.3787 0.9920 4.6858 30 1 3.3405 -0.0568 6.6883 31 1 4.0369 -0.9661 8.1184 32 1 4.5743 -2.3392 8.9238 33 1 3.1906 -3.8804 4.7458 34 1 2.2368 -2.8204 2.7453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596622420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:40 Heat of formation + Delta-G solvation = -54.535420 kcal Electronic energy + Delta-G solvation = -18749.625113 eV Core-core repulsion = 15647.065125 eV Total energy + Delta-G solvation = -3102.559988 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39432 -39.43265 -37.67215 -34.41583 -33.94063 -33.77335 -30.89092 -30.86123 -29.19918 -25.25935 -24.32057 -22.79490 -22.42359 -20.62316 -19.53333 -18.31380 -17.48704 -16.86032 -16.26886 -15.89063 -15.11015 -14.87961 -14.72396 -14.61363 -13.97494 -13.82094 -13.46489 -13.12069 -12.85304 -12.50161 -12.33497 -11.67707 -11.20041 -11.09636 -10.85687 -10.74852 -10.44436 -10.17329 -10.05999 -10.01464 -9.87886 -9.10356 -9.04369 -8.74516 -8.44159 -7.96249 -6.12654 -4.16783 0.86103 1.43178 2.79476 3.29290 3.35444 3.39049 3.40747 3.43759 3.56237 3.97162 4.40145 4.74522 4.79637 4.94283 5.21025 5.36034 5.45965 5.59539 5.90954 6.06643 6.13798 6.36772 6.41166 6.50999 6.61807 6.65423 6.69123 6.77236 7.14058 7.18369 7.32591 7.62022 7.79549 7.96704 8.13500 8.21238 8.87496 8.93133 9.49508 10.94911 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043109 B = 0.003921 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.365411 B = 7139.921117 C = 7566.761035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.032 3.968 3 H 0.057 0.943 4 C -0.506 4.506 5 H 0.076 0.924 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.518 3.482 13 O -0.517 6.517 14 N -0.688 5.688 15 C 0.196 3.804 16 C -0.168 4.168 17 C -0.065 4.065 18 C -0.179 4.179 19 C 0.569 3.431 20 N -0.856 5.856 21 O -0.547 6.547 22 C -0.035 4.035 23 C -0.137 4.137 24 H 0.034 0.966 25 H 0.013 0.987 26 H 0.097 0.903 27 H 0.262 0.738 28 H 0.410 0.590 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.400 0.600 32 H 0.402 0.598 33 H 0.136 0.864 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.897 2.135 17.591 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 H 0.075 0.925 4 C -0.544 4.544 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.309 3.691 13 O -0.390 6.390 14 N -0.333 5.333 15 C 0.099 3.901 16 C -0.189 4.189 17 C -0.084 4.084 18 C -0.183 4.183 19 C 0.356 3.644 20 N -0.419 5.419 21 O -0.425 6.425 22 C -0.055 4.055 23 C -0.158 4.158 24 H 0.053 0.947 25 H 0.032 0.968 26 H 0.115 0.885 27 H 0.072 0.928 28 H 0.247 0.753 29 H 0.148 0.852 30 H 0.142 0.858 31 H 0.229 0.771 32 H 0.232 0.768 33 H 0.153 0.847 34 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.381 0.785 17.068 17.142 hybrid contribution 0.066 0.477 -0.407 0.631 sum 1.447 1.262 16.661 16.771 Atomic orbital electron populations 1.21788 0.96189 1.00136 1.01224 1.18928 0.94337 0.96993 0.88640 0.92485 1.21113 1.31426 1.13021 0.88843 0.90630 1.24944 0.94968 0.94995 0.99194 1.69858 1.36889 1.22943 1.23772 0.86418 0.79520 0.79249 0.81869 1.20573 1.21227 1.19662 1.22406 0.78207 0.84370 0.84068 1.90549 1.36662 1.25664 1.86156 1.44159 1.47791 1.36492 1.04816 1.18212 0.93046 0.91913 0.86974 1.20840 1.04372 0.99740 0.93911 1.20929 0.96738 0.93225 0.97502 1.19701 1.08844 0.94204 0.95558 1.18284 0.76724 0.86250 0.83129 1.43757 1.68327 1.12374 1.17491 1.90808 1.53985 1.14783 1.82937 1.21155 0.93372 1.00347 0.90635 1.21430 1.01674 0.93500 0.99186 0.94717 0.96820 0.88492 0.92805 0.75350 0.85153 0.85770 0.77081 0.76771 0.84658 0.83347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.86 37.16 0.33 -2.58 16 2 C 0.03 0.75 2.65 -92.92 -0.25 0.50 16 3 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 4 C -0.51 -13.77 8.37 -34.44 -0.29 -14.06 16 5 H 0.08 2.18 6.75 -52.49 -0.35 1.82 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.29 11.32 55.43 0.63 -23.66 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.52 11.05 6.99 -10.99 -0.08 10.97 16 13 O -0.52 -12.58 12.88 5.56 0.07 -12.51 16 14 N -0.69 -11.23 5.23 -9.86 -0.05 -11.29 16 15 C 0.20 3.01 6.30 -83.74 -0.53 2.49 16 16 C -0.17 -1.99 9.94 -39.46 -0.39 -2.38 16 17 C -0.06 -0.68 9.53 -39.22 -0.37 -1.05 16 18 C -0.18 -2.32 5.88 -104.95 -0.62 -2.93 16 19 C 0.57 7.21 8.04 -12.44 -0.10 7.11 16 20 N -0.86 -6.58 8.82 30.47 0.27 -6.31 16 21 O -0.55 -9.10 17.17 5.28 0.09 -9.01 16 22 C -0.04 -0.53 9.58 -39.23 -0.38 -0.91 16 23 C -0.14 -2.27 8.67 -39.46 -0.34 -2.62 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.23 7.47 -51.93 -0.39 -0.16 16 26 H 0.10 2.32 6.07 -51.93 -0.32 2.01 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.41 5.45 8.11 -40.82 -0.33 5.12 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 30 H 0.12 0.79 6.39 -52.49 -0.34 0.46 16 31 H 0.40 1.90 6.85 -40.82 -0.28 1.62 16 32 H 0.40 2.50 8.93 -40.82 -0.36 2.13 16 33 H 0.14 2.00 7.64 -52.49 -0.40 1.60 16 34 H 0.15 2.78 6.21 -52.49 -0.33 2.45 16 LS Contribution 293.47 15.07 4.42 4.42 Total: -1.00 -32.72 293.47 -6.19 -38.92 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -3.50 Total: 7.11 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -3.10 Total: -3.94 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: 0.84 Total: -41.26 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: 0.16 Total: -21.52 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.72 -6.19 -38.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596622420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.618 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds