Wall clock time and date at job start Mon Mar 30 2020 05:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47099 * 2 1 4 4 C 1.50700 * 109.47208 * 240.00027 * 2 1 3 5 5 H 1.07997 * 119.99953 * 240.00499 * 4 2 1 6 6 C 1.37879 * 119.99880 * 59.99754 * 4 2 1 7 7 N 1.31521 * 120.00028 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00188 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46890 * 89.99883 * 8 6 4 10 10 H 1.48499 * 109.47463 * 210.00188 * 8 6 4 11 11 H 1.48502 * 109.46895 * 330.00372 * 8 6 4 12 12 C 1.50699 * 109.47106 * 119.99925 * 2 1 3 13 13 O 1.21276 * 119.99731 * 120.00278 * 12 2 1 14 14 N 1.34771 * 120.00361 * 300.00076 * 12 2 1 15 15 C 1.39439 * 120.00388 * 184.57934 * 14 12 2 16 16 C 1.39128 * 119.93004 * 144.85461 * 15 14 12 17 17 C 1.37676 * 120.07470 * 180.23120 * 16 15 14 18 18 C 1.39750 * 119.92160 * 359.52063 * 17 16 15 19 19 C 1.47598 * 120.06836 * 180.23176 * 18 17 16 20 20 N 1.34777 * 120.00221 * 0.25082 * 19 18 17 21 21 O 1.21592 * 119.99807 * 180.24643 * 19 18 17 22 22 C 1.39742 * 119.85456 * 0.47716 * 18 17 16 23 23 C 1.37666 * 119.92814 * 359.75200 * 22 18 17 24 24 H 1.09004 * 109.46671 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47179 * 299.99701 * 1 2 3 26 26 H 1.08999 * 109.47178 * 59.99980 * 1 2 3 27 27 H 0.96994 * 120.00042 * 180.02562 * 7 6 4 28 28 H 0.97000 * 119.99754 * 4.58019 * 14 12 2 29 29 H 1.07997 * 119.96414 * 359.95674 * 16 15 14 30 30 H 1.08001 * 120.03236 * 179.74276 * 17 16 15 31 31 H 0.97000 * 119.99673 * 359.97438 * 20 19 18 32 32 H 0.96996 * 119.99969 * 180.02562 * 20 19 18 33 33 H 1.08001 * 120.03331 * 179.73166 * 22 18 17 34 34 H 1.08001 * 119.96370 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4118 10 1 2.4866 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.2483 -0.8488 3.5915 16 6 2.5576 -0.0729 4.7041 17 6 3.0968 -0.6603 5.8265 18 6 3.3240 -2.0390 5.8509 19 6 3.8971 -2.6729 7.0544 20 7 4.1973 -1.9227 8.1331 21 8 4.0985 -3.8719 7.0726 22 6 3.0122 -2.8154 4.7316 23 6 2.4777 -2.2210 3.6108 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.7089 1.1614 -3.4843 28 1 1.0958 0.4979 2.5447 29 1 2.3787 0.9920 4.6858 30 1 3.3405 -0.0568 6.6883 31 1 4.0369 -0.9661 8.1184 32 1 4.5743 -2.3392 8.9238 33 1 3.1906 -3.8804 4.7458 34 1 2.2368 -2.8204 2.7453 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596622420.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:39 Heat of formation + Delta-G solvation = -79.528788 kcal Electronic energy + Delta-G solvation = -18750.708907 eV Core-core repulsion = 15647.065125 eV Total energy + Delta-G solvation = -3103.643782 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.65444 -40.66706 -38.93045 -35.85637 -35.76736 -34.75380 -32.68226 -31.94054 -30.46342 -27.23367 -25.66193 -23.93934 -23.88092 -21.72420 -21.03963 -19.28951 -18.77776 -18.23814 -17.81252 -17.47747 -16.53793 -16.21246 -16.09823 -15.79119 -15.31651 -15.12494 -14.79510 -14.58005 -14.30832 -13.72861 -13.65435 -13.44124 -12.99014 -12.73215 -12.61123 -12.28323 -12.24615 -12.04183 -11.35274 -11.24452 -11.07562 -10.70611 -10.63071 -10.38749 -9.99107 -9.18205 -8.17807 -6.27994 -0.23812 0.39065 1.39955 1.41584 1.52525 1.59378 1.96970 2.18279 2.45578 2.56966 2.88190 3.12515 3.79784 3.92878 3.98094 4.16415 4.33044 4.45955 4.60199 4.72682 4.90022 4.97035 5.00627 5.11613 5.29301 5.31106 5.47763 5.48321 5.72609 5.87652 5.90208 5.97377 6.17331 6.44980 6.57532 6.80482 7.29339 7.31680 7.42443 8.87831 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.043109 B = 0.003921 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.365411 B = 7139.921117 C = 7566.761035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.049 0.951 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 C 0.521 3.479 13 O -0.558 6.558 14 N -0.668 5.668 15 C 0.169 3.831 16 C -0.150 4.150 17 C -0.044 4.044 18 C -0.178 4.178 19 C 0.566 3.434 20 N -0.826 5.826 21 O -0.595 6.595 22 C -0.052 4.052 23 C -0.159 4.159 24 H 0.023 0.977 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.266 0.734 28 H 0.427 0.573 29 H 0.170 0.830 30 H 0.180 0.820 31 H 0.418 0.582 32 H 0.413 0.587 33 H 0.122 0.878 34 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.918 4.423 20.067 20.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.571 4.571 5 H 0.067 0.933 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.199 1.199 11 H -0.205 1.205 12 C 0.312 3.688 13 O -0.435 6.435 14 N -0.314 5.314 15 C 0.073 3.927 16 C -0.170 4.170 17 C -0.063 4.063 18 C -0.182 4.182 19 C 0.353 3.647 20 N -0.390 5.390 21 O -0.478 6.478 22 C -0.072 4.072 23 C -0.179 4.179 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.266 0.734 29 H 0.187 0.813 30 H 0.197 0.803 31 H 0.251 0.749 32 H 0.246 0.754 33 H 0.140 0.860 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.380 3.151 19.618 19.917 hybrid contribution 0.088 -0.207 -1.022 1.047 sum 1.468 2.943 18.596 18.885 Atomic orbital electron populations 1.21610 0.94680 0.99662 1.02211 1.18832 0.95519 0.96226 0.88692 0.93094 1.21276 1.31837 1.12855 0.91097 0.93317 1.25531 0.95142 0.95683 1.01274 1.69925 1.37028 1.23358 1.24423 0.85636 0.78602 0.78579 0.79321 1.20090 1.19921 1.20518 1.21909 0.77918 0.83736 0.85237 1.90544 1.38647 1.27318 1.86979 1.43658 1.47629 1.36404 1.03680 1.18416 0.94813 0.91722 0.87759 1.21237 1.02225 1.01222 0.92278 1.21458 0.94116 0.92147 0.98607 1.19885 1.08038 0.95423 0.94851 1.18286 0.76617 0.85791 0.83963 1.43495 1.66208 1.13082 1.16246 1.90798 1.56196 1.16948 1.83812 1.21079 0.94458 1.00232 0.91428 1.21192 1.03561 0.94443 0.98742 0.95819 0.92396 0.90806 0.92493 0.73399 0.81283 0.80293 0.74852 0.75442 0.85987 0.86860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.86 71.98 0.64 -4.65 16 2 C 0.03 1.35 2.65 -12.28 -0.03 1.32 16 3 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 4 C -0.53 -29.95 8.37 25.60 0.21 -29.74 16 5 H 0.05 2.95 6.75 -2.91 -0.02 2.93 16 6 C 0.02 1.27 5.30 84.65 0.45 1.72 16 7 N -0.91 -49.44 11.32 21.45 0.24 -49.20 16 8 Si 0.95 44.25 29.54 68.60 2.03 46.28 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.52 22.70 6.99 87.66 0.61 23.31 16 13 O -0.56 -28.62 12.88 -3.02 -0.04 -28.66 16 14 N -0.67 -21.15 5.23 -303.50 -1.59 -22.74 16 15 C 0.17 4.99 6.30 38.36 0.24 5.23 16 16 C -0.15 -2.90 9.94 22.35 0.22 -2.68 16 17 C -0.04 -0.72 9.53 22.50 0.21 -0.50 16 18 C -0.18 -4.23 5.88 -20.08 -0.12 -4.35 16 19 C 0.57 13.13 8.04 86.71 0.70 13.83 16 20 N -0.83 -9.36 8.82 -175.76 -1.55 -10.91 16 21 O -0.60 -19.64 17.17 -4.00 -0.07 -19.71 16 22 C -0.05 -1.61 9.58 22.50 0.22 -1.39 16 23 C -0.16 -5.46 8.67 22.35 0.19 -5.27 16 24 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.06 1.90 7.47 -2.39 -0.02 1.89 16 26 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 27 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 28 H 0.43 10.28 8.11 -92.71 -0.75 9.53 16 29 H 0.17 2.05 8.06 -2.91 -0.02 2.02 16 30 H 0.18 0.92 6.39 -2.91 -0.02 0.91 16 31 H 0.42 1.58 6.85 -92.71 -0.64 0.95 16 32 H 0.41 3.60 8.93 -92.71 -0.83 2.78 16 33 H 0.12 3.94 7.64 -2.91 -0.02 3.91 16 34 H 0.11 4.65 6.21 -2.91 -0.02 4.64 16 Total: -1.00 -75.93 293.47 1.53 -74.40 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -1.04 Total: 13.71 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 3.55 Total: -3.16 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -2.90 Total: -82.85 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.11 Total: -48.37 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -75.93 1.53 -74.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596622420.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.133 kcal (2) G-P(sol) polarization free energy of solvation -75.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds