Wall clock time and date at job start Mon Mar 30 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.50698 * 109.47307 * 119.99947 * 2 1 3 5 5 H 1.07996 * 120.00643 * 119.99499 * 4 2 1 6 6 C 1.37880 * 119.99686 * 300.27566 * 4 2 1 7 7 N 1.31517 * 120.00349 * 359.72372 * 6 4 2 8 8 Si 1.86803 * 119.99827 * 179.72350 * 6 4 2 9 9 H 1.48495 * 109.47277 * 60.00206 * 8 6 4 10 10 H 1.48506 * 109.46980 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47343 * 299.99799 * 8 6 4 12 12 C 1.50704 * 109.47080 * 239.99662 * 2 1 3 13 13 O 1.21273 * 120.00187 * 240.00010 * 12 2 1 14 14 N 1.34774 * 119.99928 * 60.00119 * 12 2 1 15 15 C 1.39442 * 119.99825 * 174.72761 * 14 12 2 16 16 C 1.39126 * 119.92804 * 326.30101 * 15 14 12 17 17 C 1.37675 * 120.07445 * 179.76559 * 16 15 14 18 18 C 1.39753 * 119.92083 * 0.53111 * 17 16 15 19 19 C 1.47592 * 120.07076 * 179.70356 * 18 17 16 20 20 N 1.34780 * 120.00260 * 0.02562 * 19 18 17 21 21 O 1.21587 * 120.00341 * 180.02562 * 19 18 17 22 22 C 1.39745 * 119.85708 * 359.72045 * 18 17 16 23 23 C 1.37678 * 119.92368 * 0.02562 * 22 18 17 24 24 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47288 * 300.00167 * 1 2 3 26 26 H 1.09005 * 109.46898 * 60.00317 * 1 2 3 27 27 H 0.96988 * 120.00095 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00324 * 354.73293 * 14 12 2 29 29 H 1.07994 * 119.96231 * 359.97438 * 16 15 14 30 30 H 1.07999 * 120.03928 * 180.23184 * 17 16 15 31 31 H 0.97003 * 119.99730 * 0.02562 * 20 19 18 32 32 H 0.96999 * 120.00536 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.03963 * 179.97438 * 22 18 17 34 34 H 1.07992 * 119.96199 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1315 6 6 1.6946 -0.2426 2.4827 7 7 0.9384 0.8267 2.6034 8 14 2.3109 -1.1276 4.0079 9 1 3.7958 -1.1283 4.0138 10 1 1.8120 -0.4303 5.2204 11 1 1.8153 -2.5275 4.0022 12 6 2.0323 -0.7105 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2501 -2.4545 15 6 2.2595 -0.8397 -3.5909 16 6 3.5557 -1.3435 -3.5508 17 6 4.1026 -1.9305 -4.6695 18 6 3.3582 -2.0100 -5.8496 19 6 3.9437 -2.6328 -7.0528 20 7 5.1974 -3.1261 -7.0141 21 8 3.2952 -2.7008 -8.0790 22 6 2.0584 -1.4982 -5.8881 23 6 1.5156 -0.9171 -4.7641 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7005 1.1555 3.4843 28 1 1.0880 0.4914 -2.5451 29 1 4.1322 -1.2771 -2.6400 30 1 5.1075 -2.3248 -4.6366 31 1 5.7148 -3.0721 -6.1954 32 1 5.5821 -3.5357 -7.8048 33 1 1.4807 -1.5577 -6.7986 34 1 0.5113 -0.5211 -4.7933 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596622421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:43 Heat of formation + Delta-G solvation = -55.686679 kcal Electronic energy + Delta-G solvation = -18754.166306 eV Core-core repulsion = 15651.556395 eV Total energy + Delta-G solvation = -3102.609911 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.39995 -39.43617 -37.67786 -34.44871 -33.93162 -33.75866 -30.94482 -30.81992 -29.20879 -25.26775 -24.32977 -22.83714 -22.39652 -20.62330 -19.52243 -18.34762 -17.41946 -16.90578 -16.30123 -15.88065 -15.13078 -14.81811 -14.72540 -14.54296 -14.12499 -13.83203 -13.37910 -13.21639 -12.73718 -12.50488 -12.46322 -11.66630 -11.24227 -11.08385 -10.87193 -10.79393 -10.42613 -10.16499 -10.09672 -10.04881 -9.86243 -9.12574 -9.05914 -8.79334 -8.45392 -7.94478 -6.13737 -4.18221 0.85109 1.43678 2.77817 3.29943 3.33221 3.36825 3.41453 3.42307 3.55314 3.97438 4.38327 4.76433 4.81644 4.99030 5.19813 5.30331 5.45599 5.56351 5.84240 6.09018 6.20314 6.32277 6.39386 6.48876 6.58878 6.64679 6.67635 6.77547 7.10929 7.19865 7.31679 7.61705 7.78008 7.95426 8.13791 8.19924 8.85143 8.91036 9.47969 10.93775 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.042251 B = 0.003962 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.553071 B = 7065.114387 C = 7595.311147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.032 3.968 3 H 0.058 0.942 4 C -0.507 4.507 5 H 0.075 0.925 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.276 1.276 12 C 0.519 3.481 13 O -0.518 6.518 14 N -0.688 5.688 15 C 0.200 3.800 16 C -0.138 4.138 17 C -0.062 4.062 18 C -0.181 4.181 19 C 0.570 3.430 20 N -0.855 5.855 21 O -0.551 6.551 22 C -0.034 4.034 23 C -0.169 4.169 24 H 0.033 0.967 25 H 0.097 0.903 26 H 0.013 0.987 27 H 0.263 0.737 28 H 0.411 0.589 29 H 0.143 0.857 30 H 0.125 0.875 31 H 0.401 0.599 32 H 0.402 0.598 33 H 0.135 0.865 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -1.646 -13.903 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.011 3.989 3 H 0.076 0.924 4 C -0.545 4.545 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.310 3.690 13 O -0.391 6.391 14 N -0.333 5.333 15 C 0.102 3.898 16 C -0.158 4.158 17 C -0.081 4.081 18 C -0.185 4.185 19 C 0.358 3.642 20 N -0.418 5.418 21 O -0.429 6.429 22 C -0.054 4.054 23 C -0.190 4.190 24 H 0.052 0.948 25 H 0.115 0.885 26 H 0.032 0.968 27 H 0.073 0.927 28 H 0.247 0.753 29 H 0.161 0.839 30 H 0.143 0.857 31 H 0.231 0.769 32 H 0.232 0.768 33 H 0.153 0.847 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.228 -2.174 -14.104 14.884 hybrid contribution 0.384 -0.206 0.923 1.021 sum 4.613 -2.380 -13.181 14.167 Atomic orbital electron populations 1.21792 0.96234 1.00112 1.01255 1.18932 0.94412 0.96948 0.88651 0.92391 1.21063 1.31489 1.13120 0.88864 0.90715 1.24944 0.94930 0.95008 0.99178 1.69844 1.36680 1.22983 1.23901 0.86474 0.79279 0.79744 0.81479 1.20119 1.21294 1.20126 1.22391 0.78493 0.84002 0.84079 1.90554 1.36829 1.25487 1.86262 1.44211 1.47832 1.36335 1.04888 1.18190 0.91572 0.92957 0.87048 1.21179 0.94086 1.01129 0.99428 1.21087 0.98887 0.96592 0.91542 1.19688 0.96931 1.07907 0.93944 1.18261 0.81217 0.76936 0.87830 1.43770 1.16410 1.63783 1.17870 1.90791 1.61052 1.58252 1.32849 1.20963 0.93370 0.93152 0.97915 1.20914 1.00201 1.05114 0.92800 0.94757 0.88480 0.96813 0.92719 0.75290 0.83905 0.85715 0.76904 0.76758 0.84671 0.85043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 8.86 37.16 0.33 -2.60 16 2 C 0.03 0.73 2.65 -92.92 -0.25 0.49 16 3 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 4 C -0.51 -13.66 8.38 -34.44 -0.29 -13.95 16 5 H 0.07 2.12 6.75 -52.49 -0.35 1.76 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -24.15 11.31 55.43 0.63 -23.53 16 8 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.52 10.93 6.87 -10.98 -0.08 10.85 16 13 O -0.52 -12.34 13.15 5.56 0.07 -12.27 16 14 N -0.69 -11.24 5.24 -9.86 -0.05 -11.29 16 15 C 0.20 3.07 6.27 -83.74 -0.53 2.55 16 16 C -0.14 -2.11 8.62 -39.46 -0.34 -2.45 16 17 C -0.06 -0.76 9.53 -39.22 -0.37 -1.14 16 18 C -0.18 -2.33 5.88 -104.95 -0.62 -2.95 16 19 C 0.57 7.22 8.04 -12.44 -0.10 7.12 16 20 N -0.85 -7.09 8.82 30.47 0.27 -6.82 16 21 O -0.55 -8.85 17.17 5.29 0.09 -8.76 16 22 C -0.03 -0.45 9.58 -39.22 -0.38 -0.82 16 23 C -0.17 -2.21 9.94 -39.45 -0.39 -2.60 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.10 2.33 6.06 -51.93 -0.31 2.01 16 26 H 0.01 0.23 7.45 -51.93 -0.39 -0.16 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.41 5.55 8.09 -40.82 -0.33 5.22 16 29 H 0.14 2.44 6.42 -52.49 -0.34 2.10 16 30 H 0.13 1.12 6.39 -52.49 -0.34 0.78 16 31 H 0.40 2.38 6.85 -40.82 -0.28 2.10 16 32 H 0.40 2.67 8.93 -40.82 -0.36 2.31 16 33 H 0.14 1.64 7.64 -52.49 -0.40 1.24 16 34 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -32.11 293.73 -6.19 -38.31 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -3.51 Total: 7.88 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -3.10 Total: -3.98 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.84 Total: -41.64 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.16 Total: -21.03 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -32.11 -6.19 -38.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596622421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.380 kcal (2) G-P(sol) polarization free energy of solvation -32.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds