Wall clock time and date at job start Mon Mar 30 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47281 * 2 1 4 4 C 1.50698 * 109.47307 * 119.99947 * 2 1 3 5 5 H 1.07996 * 120.00643 * 119.99499 * 4 2 1 6 6 C 1.37880 * 119.99686 * 300.27566 * 4 2 1 7 7 N 1.31517 * 120.00349 * 359.72372 * 6 4 2 8 8 Si 1.86803 * 119.99827 * 179.72350 * 6 4 2 9 9 H 1.48495 * 109.47277 * 60.00206 * 8 6 4 10 10 H 1.48506 * 109.46980 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47343 * 299.99799 * 8 6 4 12 12 C 1.50704 * 109.47080 * 239.99662 * 2 1 3 13 13 O 1.21273 * 120.00187 * 240.00010 * 12 2 1 14 14 N 1.34774 * 119.99928 * 60.00119 * 12 2 1 15 15 C 1.39442 * 119.99825 * 174.72761 * 14 12 2 16 16 C 1.39126 * 119.92804 * 326.30101 * 15 14 12 17 17 C 1.37675 * 120.07445 * 179.76559 * 16 15 14 18 18 C 1.39753 * 119.92083 * 0.53111 * 17 16 15 19 19 C 1.47592 * 120.07076 * 179.70356 * 18 17 16 20 20 N 1.34780 * 120.00260 * 0.02562 * 19 18 17 21 21 O 1.21587 * 120.00341 * 180.02562 * 19 18 17 22 22 C 1.39745 * 119.85708 * 359.72045 * 18 17 16 23 23 C 1.37678 * 119.92368 * 0.02562 * 22 18 17 24 24 H 1.09001 * 109.47281 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47288 * 300.00167 * 1 2 3 26 26 H 1.09005 * 109.46898 * 60.00317 * 1 2 3 27 27 H 0.96988 * 120.00095 * 179.97438 * 7 6 4 28 28 H 0.96999 * 120.00324 * 354.73293 * 14 12 2 29 29 H 1.07994 * 119.96231 * 359.97438 * 16 15 14 30 30 H 1.07999 * 120.03928 * 180.23184 * 17 16 15 31 31 H 0.97003 * 119.99730 * 0.02562 * 20 19 18 32 32 H 0.96999 * 120.00536 * 179.97438 * 20 19 18 33 33 H 1.07999 * 120.03963 * 179.97438 * 22 18 17 34 34 H 1.07992 * 119.96199 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1315 6 6 1.6946 -0.2426 2.4827 7 7 0.9384 0.8267 2.6034 8 14 2.3109 -1.1276 4.0079 9 1 3.7958 -1.1283 4.0138 10 1 1.8120 -0.4303 5.2204 11 1 1.8153 -2.5275 4.0022 12 6 2.0323 -0.7105 -1.2305 13 8 2.7295 -1.6965 -1.1192 14 7 1.7067 -0.2501 -2.4545 15 6 2.2595 -0.8397 -3.5909 16 6 3.5557 -1.3435 -3.5508 17 6 4.1026 -1.9305 -4.6695 18 6 3.3582 -2.0100 -5.8496 19 6 3.9437 -2.6328 -7.0528 20 7 5.1974 -3.1261 -7.0141 21 8 3.2952 -2.7008 -8.0790 22 6 2.0584 -1.4982 -5.8881 23 6 1.5156 -0.9171 -4.7641 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 0.7005 1.1555 3.4843 28 1 1.0880 0.4914 -2.5451 29 1 4.1322 -1.2771 -2.6400 30 1 5.1075 -2.3248 -4.6366 31 1 5.7148 -3.0721 -6.1954 32 1 5.5821 -3.5357 -7.8048 33 1 1.4807 -1.5577 -6.7986 34 1 0.5113 -0.5211 -4.7933 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596622421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:43 Heat of formation + Delta-G solvation = -79.351603 kcal Electronic energy + Delta-G solvation = -18755.192494 eV Core-core repulsion = 15651.556395 eV Total energy + Delta-G solvation = -3103.636099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.65021 -40.66039 -38.92662 -35.84108 -35.77478 -34.72926 -32.68194 -31.93745 -30.47133 -27.22316 -25.66743 -23.97756 -23.83172 -21.73777 -21.01478 -19.34562 -18.73502 -18.18705 -17.84816 -17.45632 -16.56274 -16.27025 -15.90007 -15.76122 -15.47216 -15.12921 -14.78797 -14.50178 -14.32099 -13.79940 -13.60751 -13.42484 -12.98045 -12.72483 -12.60600 -12.28473 -12.22338 -12.02199 -11.39233 -11.22918 -11.06662 -10.71335 -10.64518 -10.39072 -10.00385 -9.16400 -8.16365 -6.27008 -0.24144 0.38421 1.43049 1.43579 1.51963 1.58019 1.98486 2.17642 2.46432 2.58055 2.88467 3.14253 3.78075 3.88285 3.97003 4.17848 4.30535 4.45578 4.56853 4.72925 4.90626 4.95532 5.01093 5.12415 5.28661 5.30418 5.45634 5.47819 5.73005 5.86408 5.90621 5.96645 6.17602 6.40186 6.56086 6.81484 7.28079 7.28761 7.43122 8.89213 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.042251 B = 0.003962 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.553071 B = 7065.114387 C = 7595.311147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.027 3.973 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.052 0.948 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.554 6.554 14 N -0.670 5.670 15 C 0.173 3.827 16 C -0.156 4.156 17 C -0.051 4.051 18 C -0.180 4.180 19 C 0.569 3.431 20 N -0.831 5.831 21 O -0.588 6.588 22 C -0.040 4.040 23 C -0.156 4.156 24 H 0.024 0.976 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.265 0.735 28 H 0.425 0.575 29 H 0.120 0.880 30 H 0.159 0.841 31 H 0.415 0.585 32 H 0.413 0.587 33 H 0.145 0.855 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 -1.863 -15.139 15.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.071 0.929 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.202 1.202 11 H -0.202 1.202 12 C 0.315 3.685 13 O -0.430 6.430 14 N -0.316 5.316 15 C 0.077 3.923 16 C -0.177 4.177 17 C -0.070 4.070 18 C -0.184 4.184 19 C 0.356 3.644 20 N -0.396 5.396 21 O -0.470 6.470 22 C -0.060 4.060 23 C -0.176 4.176 24 H 0.043 0.957 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.263 0.737 29 H 0.138 0.862 30 H 0.176 0.824 31 H 0.247 0.753 32 H 0.246 0.754 33 H 0.163 0.837 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.484 -2.374 -15.368 16.184 hybrid contribution 0.377 -0.150 1.192 1.259 sum 4.861 -2.524 -14.175 15.197 Atomic orbital electron populations 1.21617 0.94847 0.99680 1.02137 1.18841 0.95528 0.96164 0.88906 0.93292 1.21252 1.31820 1.12980 0.90928 0.92945 1.25562 0.95106 0.95694 1.01388 1.69926 1.36975 1.23554 1.24470 0.85669 0.78734 0.78710 0.78890 1.20044 1.20175 1.20233 1.21827 0.78193 0.83457 0.85004 1.90534 1.38496 1.26999 1.86984 1.43740 1.47553 1.36424 1.03879 1.18379 0.92188 0.94537 0.87241 1.21158 0.94444 1.02491 0.99596 1.21313 1.00197 0.95313 0.90209 1.19890 0.97067 1.07228 0.94176 1.18238 0.82134 0.76990 0.87047 1.43592 1.14986 1.61958 1.19040 1.90782 1.62307 1.60000 1.33941 1.21190 0.93679 0.92903 0.98226 1.21088 1.00963 1.04024 0.91522 0.95703 0.90876 0.92566 0.92539 0.73652 0.86208 0.82380 0.75269 0.75430 0.83693 0.82491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.86 71.98 0.64 -4.68 16 2 C 0.03 1.26 2.65 -12.29 -0.03 1.23 16 3 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 4 C -0.53 -29.29 8.38 25.60 0.21 -29.08 16 5 H 0.05 3.07 6.75 -2.91 -0.02 3.05 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -49.34 11.31 21.45 0.24 -49.10 16 8 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 12 C 0.52 22.26 6.87 87.66 0.60 22.86 16 13 O -0.55 -27.02 13.15 -3.01 -0.04 -27.06 16 14 N -0.67 -21.32 5.24 -303.50 -1.59 -22.91 16 15 C 0.17 5.11 6.27 38.36 0.24 5.35 16 16 C -0.16 -4.69 8.62 22.35 0.19 -4.50 16 17 C -0.05 -1.17 9.53 22.50 0.21 -0.95 16 18 C -0.18 -4.25 5.88 -20.08 -0.12 -4.36 16 19 C 0.57 13.10 8.04 86.71 0.70 13.80 16 20 N -0.83 -11.39 8.82 -175.77 -1.55 -12.94 16 21 O -0.59 -17.93 17.17 -3.99 -0.07 -18.00 16 22 C -0.04 -0.96 9.58 22.50 0.22 -0.75 16 23 C -0.16 -3.70 9.94 22.35 0.22 -3.48 16 24 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 3.50 6.06 -2.39 -0.01 3.48 16 26 H 0.06 1.86 7.45 -2.38 -0.02 1.84 16 27 H 0.27 13.71 8.31 -92.72 -0.77 12.94 16 28 H 0.42 10.72 8.09 -92.71 -0.75 9.97 16 29 H 0.12 4.18 6.42 -2.91 -0.02 4.17 16 30 H 0.16 2.37 6.39 -2.91 -0.02 2.35 16 31 H 0.42 3.52 6.85 -92.71 -0.64 2.89 16 32 H 0.41 4.31 8.93 -92.71 -0.83 3.49 16 33 H 0.15 3.20 7.64 -2.91 -0.02 3.17 16 34 H 0.16 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -70.29 293.73 1.52 -68.77 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -1.04 Total: 18.74 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 3.54 Total: -2.94 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -2.90 Total: -84.94 kcal Atomic # 8 Polarization: -44.95 SS G_CDS: -0.11 Total: -45.06 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -70.29 1.52 -68.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596622421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.577 kcal (2) G-P(sol) polarization free energy of solvation -70.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds