Wall clock time and date at job start Mon Mar 30 2020 05:16:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.47020 * 2 1
4 4 C 1.50693 * 109.47326 * 239.99661 * 2 1 3
5 5 H 1.08005 * 120.00110 * 239.99609 * 4 2 1
6 6 C 1.37875 * 119.99957 * 60.00070 * 4 2 1
7 7 N 1.31515 * 120.00267 * 359.97438 * 6 4 2
8 8 Si 1.86806 * 119.99949 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.46802 * 59.99953 * 8 6 4
10 10 H 1.48494 * 109.47072 * 179.97438 * 8 6 4
11 11 H 1.48501 * 109.47212 * 300.00128 * 8 6 4
12 12 C 1.50703 * 109.47140 * 119.99171 * 2 1 3
13 13 O 1.21285 * 119.99816 * 120.00345 * 12 2 1
14 14 N 1.34777 * 120.00214 * 300.00875 * 12 2 1
15 15 C 1.39956 * 119.99943 * 175.37778 * 14 12 2
16 16 C 1.38993 * 119.99566 * 214.82266 * 15 14 12
17 17 C 1.38211 * 120.22006 * 179.76614 * 16 15 14
18 18 C 1.38022 * 120.22367 * 0.50458 * 17 16 15
19 19 C 1.39585 * 119.99518 * 359.75407 * 18 17 16
20 20 C 1.47857 * 120.10866 * 180.02562 * 19 18 17
21 21 N 1.34771 * 120.00204 * 359.97087 * 20 19 18
22 22 O 1.21559 * 119.99575 * 179.97438 * 20 19 18
23 23 C 1.38594 * 120.00169 * 35.09544 * 15 14 12
24 24 H 1.08999 * 109.47423 * 300.00115 * 1 2 3
25 25 H 1.08995 * 109.47188 * 60.00830 * 1 2 3
26 26 H 1.09003 * 109.46562 * 180.02562 * 1 2 3
27 27 H 0.96998 * 119.99812 * 180.02562 * 7 6 4
28 28 H 0.96995 * 119.99769 * 355.36743 * 14 12 2
29 29 H 1.08000 * 119.88523 * 0.02562 * 16 15 14
30 30 H 1.07996 * 119.88991 * 180.25648 * 17 16 15
31 31 H 1.07993 * 120.00323 * 179.76551 * 18 17 16
32 32 H 0.96993 * 120.00281 * 0.02562 * 21 20 19
33 33 H 0.97004 * 119.99677 * 179.97438 * 21 20 19
34 34 H 1.08007 * 120.10884 * 359.95912 * 23 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2303
5 1 2.6534 -1.5885 -1.1312
6 6 1.6993 -0.2395 -2.4826
7 7 0.9428 0.8295 -2.6034
8 14 2.3227 -1.1197 -4.0078
9 1 1.8282 -2.5200 -4.0079
10 1 1.8271 -0.4202 -5.2203
11 1 3.8077 -1.1192 -4.0075
12 6 2.0323 -0.7102 1.2306
13 8 2.7297 -1.6963 1.1194
14 7 1.7066 -0.2497 2.4547
15 6 2.0914 -0.9629 3.5958
16 6 1.2614 -0.9909 4.7103
17 6 1.6345 -1.6977 5.8380
18 6 2.8386 -2.3717 5.8686
19 6 3.6816 -2.3453 4.7565
20 6 4.9718 -3.0669 4.7864
21 7 5.3357 -3.7512 5.8889
22 8 5.7042 -3.0429 3.8165
23 6 3.3025 -1.6363 3.6165
24 1 -0.3634 0.5138 0.8899
25 1 -0.3633 0.5137 -0.8900
26 1 -0.3632 -1.0277 0.0005
27 1 0.7082 1.1606 -3.4845
28 1 1.2057 0.5760 2.5447
29 1 0.3198 -0.4621 4.6936
30 1 0.9836 -1.7193 6.6995
31 1 3.1283 -2.9197 6.7530
32 1 4.7512 -3.7707 6.6627
33 1 6.1820 -4.2250 5.9084
34 1 3.9505 -1.6126 2.7528
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000596684206.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:16:46
Heat of formation + Delta-G solvation = -52.092903 kcal
Electronic energy + Delta-G solvation = -19016.508799 eV
Core-core repulsion = 15914.054726 eV
Total energy + Delta-G solvation = -3102.454073 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.35014 -39.23315 -37.68669 -34.42042 -33.84434 -33.58999 -30.98175 -30.76844
-28.94535 -25.18203 -24.18491 -23.54072 -21.86754 -20.53353 -19.48155 -18.38390
-17.00820 -16.42429 -16.25838 -15.93461 -15.53490 -14.81299 -14.63414 -14.50696
-14.02314 -13.90968 -13.47546 -13.04587 -12.64922 -12.41629 -11.90935 -11.64801
-11.46517 -11.01174 -10.78399 -10.70902 -10.35603 -10.10966 -9.99635 -9.94190
-9.78195 -9.03884 -8.98034 -8.66221 -8.36448 -7.92076 -6.06054 -4.09598
0.87702 1.43396 2.86973 3.37256 3.37934 3.39153 3.45214 3.51516
3.69101 4.00877 4.46267 4.74778 4.81784 5.04153 5.24341 5.27681
5.49020 5.58591 5.82273 6.08172 6.28422 6.38534 6.47755 6.54914
6.59636 6.73233 6.75479 6.85845 7.21135 7.25829 7.39362 7.68779
7.88428 8.04226 8.23354 8.29843 8.97894 9.01775 9.56289 11.01552
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.026537 B = 0.004967 C = 0.004269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1054.876312 B = 5635.637382 C = 6556.899595
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C 0.032 3.968
3 H 0.057 0.943
4 C -0.504 4.504
5 H 0.075 0.925
6 C 0.060 3.940
7 N -0.897 5.897
8 Si 0.902 3.098
9 H -0.276 1.276
10 H -0.288 1.288
11 H -0.275 1.275
12 C 0.516 3.484
13 O -0.517 6.517
14 N -0.689 5.689
15 C 0.157 3.843
16 C -0.130 4.130
17 C -0.109 4.109
18 C -0.118 4.118
19 C -0.124 4.124
20 C 0.562 3.438
21 N -0.855 5.855
22 O -0.530 6.530
23 C -0.066 4.066
24 H 0.013 0.987
25 H 0.096 0.904
26 H 0.032 0.968
27 H 0.262 0.738
28 H 0.409 0.591
29 H 0.129 0.871
30 H 0.128 0.872
31 H 0.122 0.878
32 H 0.399 0.601
33 H 0.403 0.597
34 H 0.156 0.844
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.064 -2.782 19.584 19.781
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C 0.011 3.989
3 H 0.075 0.925
4 C -0.543 4.543
5 H 0.093 0.907
6 C -0.141 4.141
7 N -0.536 5.536
8 Si 0.730 3.270
9 H -0.202 1.202
10 H -0.213 1.213
11 H -0.201 1.201
12 C 0.307 3.693
13 O -0.390 6.390
14 N -0.335 5.335
15 C 0.061 3.939
16 C -0.151 4.151
17 C -0.128 4.128
18 C -0.137 4.137
19 C -0.128 4.128
20 C 0.349 3.651
21 N -0.419 5.419
22 O -0.406 6.406
23 C -0.087 4.087
24 H 0.032 0.968
25 H 0.114 0.886
26 H 0.051 0.949
27 H 0.072 0.928
28 H 0.245 0.755
29 H 0.147 0.853
30 H 0.146 0.854
31 H 0.140 0.860
32 H 0.228 0.772
33 H 0.233 0.767
34 H 0.174 0.826
Dipole moment (debyes) X Y Z Total
from point charges 0.695 -3.243 18.505 18.800
hybrid contribution -0.045 -0.236 -0.258 0.352
sum 0.650 -3.479 18.247 18.587
Atomic orbital electron populations
1.21766 0.96226 1.00015 1.01134 1.18909 0.94329 0.96946 0.88682
0.92545 1.21086 1.31300 1.12999 0.88867 0.90689 1.24932 0.94987
0.95021 0.99137 1.69853 1.36921 1.23034 1.23770 0.86479 0.79390
0.79699 0.81450 1.20159 1.21341 1.20084 1.22389 0.78315 0.84479
0.84103 1.90580 1.35905 1.26378 1.86104 1.44155 1.58004 1.26757
1.04557 1.17880 0.92575 0.95674 0.87725 1.21156 0.99016 1.01389
0.93553 1.20786 0.96482 0.97614 0.97926 1.21096 0.94939 1.00512
0.97176 1.19712 0.95302 1.02189 0.95626 1.18335 0.86013 0.78335
0.82464 1.43732 1.25323 1.55451 1.17442 1.90865 1.53684 1.61546
1.34512 1.21565 0.94715 0.94598 0.97842 0.96831 0.88578 0.94859
0.92824 0.75492 0.85310 0.85363 0.86043 0.77162 0.76666 0.82647
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16
2 C 0.03 0.79 2.64 -92.93 -0.24 0.55 16
3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16
4 C -0.50 -14.26 8.37 -34.44 -0.29 -14.54 16
5 H 0.07 2.25 6.75 -52.48 -0.35 1.90 16
6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16
7 N -0.90 -24.93 11.32 55.43 0.63 -24.31 16
8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16
9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16
11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
12 C 0.52 11.68 6.99 -10.98 -0.08 11.60 16
13 O -0.52 -13.48 12.89 5.55 0.07 -13.40 16
14 N -0.69 -12.00 5.19 -9.89 -0.05 -12.05 16
15 C 0.16 2.57 6.29 -83.74 -0.53 2.04 16
16 C -0.13 -1.60 9.96 -39.31 -0.39 -1.99 16
17 C -0.11 -1.12 10.02 -39.67 -0.40 -1.52 16
18 C -0.12 -1.25 9.54 -39.16 -0.37 -1.63 16
19 C -0.12 -1.83 5.87 -104.99 -0.62 -2.45 16
20 C 0.56 8.39 8.05 -12.33 -0.10 8.29 16
21 N -0.85 -7.77 8.82 30.53 0.27 -7.50 16
22 O -0.53 -10.55 17.18 5.31 0.09 -10.46 16
23 C -0.07 -1.20 8.24 -38.98 -0.32 -1.52 16
24 H 0.01 0.24 7.67 -51.93 -0.40 -0.16 16
25 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16
26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16
27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16
28 H 0.41 5.80 8.39 -40.82 -0.34 5.46 16
29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16
30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16
31 H 0.12 0.81 6.40 -52.49 -0.34 0.47 16
32 H 0.40 2.27 6.86 -40.82 -0.28 1.99 16
33 H 0.40 3.07 8.93 -40.82 -0.36 2.71 16
34 H 0.16 3.43 5.81 -52.48 -0.30 3.12 16
LS Contribution 294.00 15.07 4.43 4.43
Total: -1.00 -34.67 294.00 -6.21 -40.87
By element:
Atomic # 1 Polarization: 11.24 SS G_CDS: -3.52 Total: 7.72 kcal
Atomic # 6 Polarization: 0.85 SS G_CDS: -3.10 Total: -2.26 kcal
Atomic # 7 Polarization: -44.71 SS G_CDS: 0.85 Total: -43.87 kcal
Atomic # 8 Polarization: -24.02 SS G_CDS: 0.16 Total: -23.86 kcal
Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal
Total LS contribution 4.43 Total: 4.43 kcal
Total: -34.67 -6.21 -40.87 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596684206.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.219 kcal
(2) G-P(sol) polarization free energy of solvation -34.669 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.888 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.093 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds