Wall clock time and date at job start Mon Mar 30 2020 05:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.47020 * 2 1 4 4 C 1.50693 * 109.47326 * 239.99661 * 2 1 3 5 5 H 1.08005 * 120.00110 * 239.99609 * 4 2 1 6 6 C 1.37875 * 119.99957 * 60.00070 * 4 2 1 7 7 N 1.31515 * 120.00267 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99949 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46802 * 59.99953 * 8 6 4 10 10 H 1.48494 * 109.47072 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47212 * 300.00128 * 8 6 4 12 12 C 1.50703 * 109.47140 * 119.99171 * 2 1 3 13 13 O 1.21285 * 119.99816 * 120.00345 * 12 2 1 14 14 N 1.34777 * 120.00214 * 300.00875 * 12 2 1 15 15 C 1.39956 * 119.99943 * 175.37778 * 14 12 2 16 16 C 1.38993 * 119.99566 * 214.82266 * 15 14 12 17 17 C 1.38211 * 120.22006 * 179.76614 * 16 15 14 18 18 C 1.38022 * 120.22367 * 0.50458 * 17 16 15 19 19 C 1.39585 * 119.99518 * 359.75407 * 18 17 16 20 20 C 1.47857 * 120.10866 * 180.02562 * 19 18 17 21 21 N 1.34771 * 120.00204 * 359.97087 * 20 19 18 22 22 O 1.21559 * 119.99575 * 179.97438 * 20 19 18 23 23 C 1.38594 * 120.00169 * 35.09544 * 15 14 12 24 24 H 1.08999 * 109.47423 * 300.00115 * 1 2 3 25 25 H 1.08995 * 109.47188 * 60.00830 * 1 2 3 26 26 H 1.09003 * 109.46562 * 180.02562 * 1 2 3 27 27 H 0.96998 * 119.99812 * 180.02562 * 7 6 4 28 28 H 0.96995 * 119.99769 * 355.36743 * 14 12 2 29 29 H 1.08000 * 119.88523 * 0.02562 * 16 15 14 30 30 H 1.07996 * 119.88991 * 180.25648 * 17 16 15 31 31 H 1.07993 * 120.00323 * 179.76551 * 18 17 16 32 32 H 0.96993 * 120.00281 * 0.02562 * 21 20 19 33 33 H 0.97004 * 119.99677 * 179.97438 * 21 20 19 34 34 H 1.08007 * 120.10884 * 359.95912 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2303 5 1 2.6534 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4826 7 7 0.9428 0.8295 -2.6034 8 14 2.3227 -1.1197 -4.0078 9 1 1.8282 -2.5200 -4.0079 10 1 1.8271 -0.4202 -5.2203 11 1 3.8077 -1.1192 -4.0075 12 6 2.0323 -0.7102 1.2306 13 8 2.7297 -1.6963 1.1194 14 7 1.7066 -0.2497 2.4547 15 6 2.0914 -0.9629 3.5958 16 6 1.2614 -0.9909 4.7103 17 6 1.6345 -1.6977 5.8380 18 6 2.8386 -2.3717 5.8686 19 6 3.6816 -2.3453 4.7565 20 6 4.9718 -3.0669 4.7864 21 7 5.3357 -3.7512 5.8889 22 8 5.7042 -3.0429 3.8165 23 6 3.3025 -1.6363 3.6165 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 0.7082 1.1606 -3.4845 28 1 1.2057 0.5760 2.5447 29 1 0.3198 -0.4621 4.6936 30 1 0.9836 -1.7193 6.6995 31 1 3.1283 -2.9197 6.7530 32 1 4.7512 -3.7707 6.6627 33 1 6.1820 -4.2250 5.9084 34 1 3.9505 -1.6126 2.7528 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596684206.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:46 Heat of formation + Delta-G solvation = -52.092903 kcal Electronic energy + Delta-G solvation = -19016.508799 eV Core-core repulsion = 15914.054726 eV Total energy + Delta-G solvation = -3102.454073 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.35014 -39.23315 -37.68669 -34.42042 -33.84434 -33.58999 -30.98175 -30.76844 -28.94535 -25.18203 -24.18491 -23.54072 -21.86754 -20.53353 -19.48155 -18.38390 -17.00820 -16.42429 -16.25838 -15.93461 -15.53490 -14.81299 -14.63414 -14.50696 -14.02314 -13.90968 -13.47546 -13.04587 -12.64922 -12.41629 -11.90935 -11.64801 -11.46517 -11.01174 -10.78399 -10.70902 -10.35603 -10.10966 -9.99635 -9.94190 -9.78195 -9.03884 -8.98034 -8.66221 -8.36448 -7.92076 -6.06054 -4.09598 0.87702 1.43396 2.86973 3.37256 3.37934 3.39153 3.45214 3.51516 3.69101 4.00877 4.46267 4.74778 4.81784 5.04153 5.24341 5.27681 5.49020 5.58591 5.82273 6.08172 6.28422 6.38534 6.47755 6.54914 6.59636 6.73233 6.75479 6.85845 7.21135 7.25829 7.39362 7.68779 7.88428 8.04226 8.23354 8.29843 8.97894 9.01775 9.56289 11.01552 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.026537 B = 0.004967 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.876312 B = 5635.637382 C = 6556.899595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.032 3.968 3 H 0.057 0.943 4 C -0.504 4.504 5 H 0.075 0.925 6 C 0.060 3.940 7 N -0.897 5.897 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.516 3.484 13 O -0.517 6.517 14 N -0.689 5.689 15 C 0.157 3.843 16 C -0.130 4.130 17 C -0.109 4.109 18 C -0.118 4.118 19 C -0.124 4.124 20 C 0.562 3.438 21 N -0.855 5.855 22 O -0.530 6.530 23 C -0.066 4.066 24 H 0.013 0.987 25 H 0.096 0.904 26 H 0.032 0.968 27 H 0.262 0.738 28 H 0.409 0.591 29 H 0.129 0.871 30 H 0.128 0.872 31 H 0.122 0.878 32 H 0.399 0.601 33 H 0.403 0.597 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 -2.782 19.584 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.075 0.925 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.201 1.201 12 C 0.307 3.693 13 O -0.390 6.390 14 N -0.335 5.335 15 C 0.061 3.939 16 C -0.151 4.151 17 C -0.128 4.128 18 C -0.137 4.137 19 C -0.128 4.128 20 C 0.349 3.651 21 N -0.419 5.419 22 O -0.406 6.406 23 C -0.087 4.087 24 H 0.032 0.968 25 H 0.114 0.886 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.245 0.755 29 H 0.147 0.853 30 H 0.146 0.854 31 H 0.140 0.860 32 H 0.228 0.772 33 H 0.233 0.767 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.695 -3.243 18.505 18.800 hybrid contribution -0.045 -0.236 -0.258 0.352 sum 0.650 -3.479 18.247 18.587 Atomic orbital electron populations 1.21766 0.96226 1.00015 1.01134 1.18909 0.94329 0.96946 0.88682 0.92545 1.21086 1.31300 1.12999 0.88867 0.90689 1.24932 0.94987 0.95021 0.99137 1.69853 1.36921 1.23034 1.23770 0.86479 0.79390 0.79699 0.81450 1.20159 1.21341 1.20084 1.22389 0.78315 0.84479 0.84103 1.90580 1.35905 1.26378 1.86104 1.44155 1.58004 1.26757 1.04557 1.17880 0.92575 0.95674 0.87725 1.21156 0.99016 1.01389 0.93553 1.20786 0.96482 0.97614 0.97926 1.21096 0.94939 1.00512 0.97176 1.19712 0.95302 1.02189 0.95626 1.18335 0.86013 0.78335 0.82464 1.43732 1.25323 1.55451 1.17442 1.90865 1.53684 1.61546 1.34512 1.21565 0.94715 0.94598 0.97842 0.96831 0.88578 0.94859 0.92824 0.75492 0.85310 0.85363 0.86043 0.77162 0.76666 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.87 37.16 0.33 -2.65 16 2 C 0.03 0.79 2.64 -92.93 -0.24 0.55 16 3 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 4 C -0.50 -14.26 8.37 -34.44 -0.29 -14.54 16 5 H 0.07 2.25 6.75 -52.48 -0.35 1.90 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -24.93 11.32 55.43 0.63 -24.31 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.52 11.68 6.99 -10.98 -0.08 11.60 16 13 O -0.52 -13.48 12.89 5.55 0.07 -13.40 16 14 N -0.69 -12.00 5.19 -9.89 -0.05 -12.05 16 15 C 0.16 2.57 6.29 -83.74 -0.53 2.04 16 16 C -0.13 -1.60 9.96 -39.31 -0.39 -1.99 16 17 C -0.11 -1.12 10.02 -39.67 -0.40 -1.52 16 18 C -0.12 -1.25 9.54 -39.16 -0.37 -1.63 16 19 C -0.12 -1.83 5.87 -104.99 -0.62 -2.45 16 20 C 0.56 8.39 8.05 -12.33 -0.10 8.29 16 21 N -0.85 -7.77 8.82 30.53 0.27 -7.50 16 22 O -0.53 -10.55 17.18 5.31 0.09 -10.46 16 23 C -0.07 -1.20 8.24 -38.98 -0.32 -1.52 16 24 H 0.01 0.24 7.67 -51.93 -0.40 -0.16 16 25 H 0.10 2.37 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.41 5.80 8.39 -40.82 -0.34 5.46 16 29 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 0.81 6.40 -52.49 -0.34 0.47 16 32 H 0.40 2.27 6.86 -40.82 -0.28 1.99 16 33 H 0.40 3.07 8.93 -40.82 -0.36 2.71 16 34 H 0.16 3.43 5.81 -52.48 -0.30 3.12 16 LS Contribution 294.00 15.07 4.43 4.43 Total: -1.00 -34.67 294.00 -6.21 -40.87 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.52 Total: 7.72 kcal Atomic # 6 Polarization: 0.85 SS G_CDS: -3.10 Total: -2.26 kcal Atomic # 7 Polarization: -44.71 SS G_CDS: 0.85 Total: -43.87 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: 0.16 Total: -23.86 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.67 -6.21 -40.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684206.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.219 kcal (2) G-P(sol) polarization free energy of solvation -34.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds