Wall clock time and date at job start Mon Mar 30 2020 05:16:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09003 * 109.47020 * 2 1
4 4 C 1.50693 * 109.47326 * 239.99661 * 2 1 3
5 5 H 1.08005 * 120.00110 * 239.99609 * 4 2 1
6 6 C 1.37875 * 119.99957 * 60.00070 * 4 2 1
7 7 N 1.31515 * 120.00267 * 359.97438 * 6 4 2
8 8 Si 1.86806 * 119.99949 * 179.97438 * 6 4 2
9 9 H 1.48501 * 109.46802 * 59.99953 * 8 6 4
10 10 H 1.48494 * 109.47072 * 179.97438 * 8 6 4
11 11 H 1.48501 * 109.47212 * 300.00128 * 8 6 4
12 12 C 1.50703 * 109.47140 * 119.99171 * 2 1 3
13 13 O 1.21285 * 119.99816 * 120.00345 * 12 2 1
14 14 N 1.34777 * 120.00214 * 300.00875 * 12 2 1
15 15 C 1.39956 * 119.99943 * 175.37778 * 14 12 2
16 16 C 1.38993 * 119.99566 * 214.82266 * 15 14 12
17 17 C 1.38211 * 120.22006 * 179.76614 * 16 15 14
18 18 C 1.38022 * 120.22367 * 0.50458 * 17 16 15
19 19 C 1.39585 * 119.99518 * 359.75407 * 18 17 16
20 20 C 1.47857 * 120.10866 * 180.02562 * 19 18 17
21 21 N 1.34771 * 120.00204 * 359.97087 * 20 19 18
22 22 O 1.21559 * 119.99575 * 179.97438 * 20 19 18
23 23 C 1.38594 * 120.00169 * 35.09544 * 15 14 12
24 24 H 1.08999 * 109.47423 * 300.00115 * 1 2 3
25 25 H 1.08995 * 109.47188 * 60.00830 * 1 2 3
26 26 H 1.09003 * 109.46562 * 180.02562 * 1 2 3
27 27 H 0.96998 * 119.99812 * 180.02562 * 7 6 4
28 28 H 0.96995 * 119.99769 * 355.36743 * 14 12 2
29 29 H 1.08000 * 119.88523 * 0.02562 * 16 15 14
30 30 H 1.07996 * 119.88991 * 180.25648 * 17 16 15
31 31 H 1.07993 * 120.00323 * 179.76551 * 18 17 16
32 32 H 0.96993 * 120.00281 * 0.02562 * 21 20 19
33 33 H 0.97004 * 119.99677 * 179.97438 * 21 20 19
34 34 H 1.08007 * 120.10884 * 359.95912 * 23 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 -1.2303
5 1 2.6534 -1.5885 -1.1312
6 6 1.6993 -0.2395 -2.4826
7 7 0.9428 0.8295 -2.6034
8 14 2.3227 -1.1197 -4.0078
9 1 1.8282 -2.5200 -4.0079
10 1 1.8271 -0.4202 -5.2203
11 1 3.8077 -1.1192 -4.0075
12 6 2.0323 -0.7102 1.2306
13 8 2.7297 -1.6963 1.1194
14 7 1.7066 -0.2497 2.4547
15 6 2.0914 -0.9629 3.5958
16 6 1.2614 -0.9909 4.7103
17 6 1.6345 -1.6977 5.8380
18 6 2.8386 -2.3717 5.8686
19 6 3.6816 -2.3453 4.7565
20 6 4.9718 -3.0669 4.7864
21 7 5.3357 -3.7512 5.8889
22 8 5.7042 -3.0429 3.8165
23 6 3.3025 -1.6363 3.6165
24 1 -0.3634 0.5138 0.8899
25 1 -0.3633 0.5137 -0.8900
26 1 -0.3632 -1.0277 0.0005
27 1 0.7082 1.1606 -3.4845
28 1 1.2057 0.5760 2.5447
29 1 0.3198 -0.4621 4.6936
30 1 0.9836 -1.7193 6.6995
31 1 3.1283 -2.9197 6.7530
32 1 4.7512 -3.7707 6.6627
33 1 6.1820 -4.2250 5.9084
34 1 3.9505 -1.6126 2.7528
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000596684206.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:16:46
Heat of formation + Delta-G solvation = -79.983492 kcal
Electronic energy + Delta-G solvation = -19017.718226 eV
Core-core repulsion = 15914.054726 eV
Total energy + Delta-G solvation = -3103.663500 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 262.110 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-41.64367 -40.62077 -38.97758 -35.88350 -35.79528 -34.72468 -32.68150 -32.00153
-30.23900 -27.23744 -25.28459 -25.12448 -23.23634 -21.67342 -21.10528 -19.48883
-18.45650 -17.92216 -17.86872 -17.09894 -16.91898 -16.50961 -16.20334 -15.84301
-15.41738 -15.16539 -14.75968 -14.61867 -14.36215 -13.77530 -13.44912 -13.00856
-12.87370 -12.77220 -12.67178 -12.46763 -12.26049 -12.04474 -11.45615 -11.19568
-11.08610 -10.78730 -10.64416 -10.37137 -9.92964 -9.16028 -8.19043 -6.29227
-0.18015 0.34818 1.38548 1.39974 1.48816 1.67157 1.92637 2.17897
2.42889 2.53552 2.89975 3.10818 3.84134 3.93540 4.13279 4.20436
4.27078 4.50623 4.60184 4.71316 4.89976 4.93961 4.98058 5.30188
5.33714 5.36347 5.45776 5.51650 5.70808 5.82889 5.90102 6.00962
6.16627 6.41054 6.60208 6.78611 7.27351 7.31700 7.42237 8.86606
Molecular weight = 262.11amu
Principal moments of inertia in cm(-1)
A = 0.026537 B = 0.004967 C = 0.004269
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1054.876312 B = 5635.637382 C = 6556.899595
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C 0.028 3.972
3 H 0.048 0.952
4 C -0.534 4.534
5 H 0.044 0.956
6 C 0.024 3.976
7 N -0.907 5.907
8 Si 0.953 3.047
9 H -0.277 1.277
10 H -0.270 1.270
11 H -0.280 1.280
12 C 0.517 3.483
13 O -0.564 6.564
14 N -0.670 5.670
15 C 0.123 3.877
16 C -0.113 4.113
17 C -0.095 4.095
18 C -0.091 4.091
19 C -0.143 4.143
20 C 0.556 3.444
21 N -0.821 5.821
22 O -0.598 6.598
23 C -0.105 4.105
24 H 0.058 0.942
25 H 0.073 0.927
26 H 0.022 0.978
27 H 0.267 0.733
28 H 0.425 0.575
29 H 0.162 0.838
30 H 0.182 0.818
31 H 0.173 0.827
32 H 0.420 0.580
33 H 0.413 0.587
34 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.036 -2.965 23.298 23.574
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.007 3.993
3 H 0.065 0.935
4 C -0.572 4.572
5 H 0.062 0.938
6 C -0.175 4.175
7 N -0.546 5.546
8 Si 0.779 3.221
9 H -0.203 1.203
10 H -0.194 1.194
11 H -0.206 1.206
12 C 0.308 3.692
13 O -0.441 6.441
14 N -0.317 5.317
15 C 0.028 3.972
16 C -0.133 4.133
17 C -0.113 4.113
18 C -0.110 4.110
19 C -0.146 4.146
20 C 0.342 3.658
21 N -0.386 5.386
22 O -0.479 6.479
23 C -0.127 4.127
24 H 0.077 0.923
25 H 0.092 0.908
26 H 0.041 0.959
27 H 0.076 0.924
28 H 0.264 0.736
29 H 0.179 0.821
30 H 0.200 0.800
31 H 0.191 0.809
32 H 0.254 0.746
33 H 0.245 0.755
34 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges -1.315 -3.411 22.332 22.629
hybrid contribution 0.572 -0.199 -1.199 1.343
sum -0.743 -3.610 21.132 21.451
Atomic orbital electron populations
1.21566 0.94319 0.99600 1.02204 1.18831 0.95821 0.95985 0.88706
0.93474 1.21220 1.31917 1.12852 0.91247 0.93762 1.25526 0.95096
0.95716 1.01200 1.69917 1.36868 1.23316 1.24503 0.85695 0.78531
0.78814 0.79088 1.20254 1.19431 1.20589 1.21942 0.77987 0.83838
0.85452 1.90574 1.37960 1.28504 1.87044 1.43651 1.57222 1.27185
1.03605 1.18092 0.93294 0.97238 0.88561 1.21570 0.99084 1.00553
0.92142 1.21436 0.96404 0.95073 0.98395 1.21664 0.93787 0.98843
0.96717 1.19806 0.96170 1.02480 0.96182 1.18596 0.85853 0.78514
0.82808 1.43426 1.25795 1.53128 1.16262 1.90835 1.55603 1.64194
1.37284 1.21284 0.95602 0.97947 0.97843 0.92307 0.90781 0.95866
0.92412 0.73627 0.82056 0.80045 0.80943 0.74625 0.75486 0.88376
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.34 8.87 71.98 0.64 -4.70 16
2 C 0.03 1.41 2.64 -12.29 -0.03 1.38 16
3 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16
4 C -0.53 -31.78 8.37 25.60 0.21 -31.57 16
5 H 0.04 2.85 6.75 -2.91 -0.02 2.83 16
6 C 0.02 1.38 5.30 84.65 0.45 1.83 16
7 N -0.91 -51.10 11.32 21.45 0.24 -50.86 16
8 Si 0.95 46.17 29.54 68.60 2.03 48.20 16
9 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16
10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16
11 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16
12 C 0.52 24.71 6.99 87.66 0.61 25.32 16
13 O -0.56 -31.97 12.89 -3.05 -0.04 -32.01 16
14 N -0.67 -23.65 5.19 -303.59 -1.58 -25.23 16
15 C 0.12 3.96 6.29 38.11 0.24 4.20 16
16 C -0.11 -2.33 9.96 22.44 0.22 -2.10 16
17 C -0.10 -1.36 10.02 22.21 0.22 -1.14 16
18 C -0.09 -1.50 9.54 22.54 0.22 -1.29 16
19 C -0.14 -4.11 5.87 -20.10 -0.12 -4.23 16
20 C 0.56 16.73 8.05 86.79 0.70 17.43 16
21 N -0.82 -13.06 8.82 -175.59 -1.55 -14.61 16
22 O -0.60 -25.63 17.18 -3.90 -0.07 -25.70 16
23 C -0.11 -4.02 8.24 22.66 0.19 -3.83 16
24 H 0.06 2.04 7.67 -2.39 -0.02 2.03 16
25 H 0.07 3.67 6.07 -2.39 -0.01 3.66 16
26 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16
27 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16
28 H 0.42 11.62 8.39 -92.71 -0.78 10.84 16
29 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16
30 H 0.18 0.87 8.06 -2.91 -0.02 0.85 16
31 H 0.17 1.03 6.40 -2.91 -0.02 1.01 16
32 H 0.42 2.88 6.86 -92.71 -0.64 2.25 16
33 H 0.41 5.52 8.93 -92.71 -0.83 4.69 16
34 H 0.10 4.88 5.81 -2.91 -0.02 4.86 16
Total: -1.00 -85.41 294.00 1.52 -83.89
By element:
Atomic # 1 Polarization: 16.07 SS G_CDS: -1.06 Total: 15.01 kcal
Atomic # 6 Polarization: -2.24 SS G_CDS: 3.55 Total: 1.31 kcal
Atomic # 7 Polarization: -87.82 SS G_CDS: -2.88 Total: -90.70 kcal
Atomic # 8 Polarization: -57.60 SS G_CDS: -0.11 Total: -57.71 kcal
Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal
Total: -85.41 1.52 -83.89 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000596684206.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.909 kcal
(2) G-P(sol) polarization free energy of solvation -85.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.505 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.893 kcal
(6) G-S(sol) free energy of system = (1) + (5) -79.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.39 seconds