Wall clock time and date at job start Mon Mar 30 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46586 * 2 1 4 4 C 1.50700 * 109.47120 * 119.99540 * 2 1 3 5 5 H 1.07994 * 119.99896 * 120.00696 * 4 2 1 6 6 C 1.37873 * 120.00034 * 299.99932 * 4 2 1 7 7 N 1.31513 * 120.00142 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00118 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47355 * 89.99904 * 8 6 4 10 10 H 1.48506 * 109.47005 * 209.99545 * 8 6 4 11 11 H 1.48498 * 109.47066 * 329.99546 * 8 6 4 12 12 C 1.50695 * 109.47366 * 239.99942 * 2 1 3 13 13 O 1.21283 * 120.00070 * 239.99576 * 12 2 1 14 14 N 1.34782 * 120.00020 * 59.99680 * 12 2 1 15 15 C 1.39954 * 119.99779 * 175.67362 * 14 12 2 16 16 C 1.38992 * 119.99557 * 214.81432 * 15 14 12 17 17 C 1.38219 * 120.22217 * 179.76245 * 16 15 14 18 18 C 1.38023 * 120.21917 * 0.51082 * 17 16 15 19 19 C 1.39576 * 119.99665 * 359.74824 * 18 17 16 20 20 C 1.47860 * 120.10702 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00592 * 0.02562 * 20 19 18 22 22 O 1.21558 * 119.99563 * 180.02562 * 20 19 18 23 23 C 1.38598 * 120.00405 * 35.08921 * 15 14 12 24 24 H 1.09001 * 109.47527 * 60.00835 * 1 2 3 25 25 H 1.09007 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47551 * 299.99857 * 1 2 3 27 27 H 0.96995 * 120.00411 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00083 * 355.39065 * 14 12 2 29 29 H 1.07996 * 119.88917 * 359.97438 * 16 15 14 30 30 H 1.07996 * 119.88906 * 180.25390 * 17 16 15 31 31 H 1.07999 * 119.99920 * 179.76202 * 18 17 16 32 32 H 0.97005 * 119.99784 * 359.97438 * 21 20 19 33 33 H 0.96994 * 120.00108 * 180.02562 * 21 20 19 34 34 H 1.08007 * 120.10698 * 359.95240 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1381 -0.8587 3.5566 8 14 0.6248 1.2792 2.6540 9 1 -0.8028 0.8728 2.6998 10 1 0.9759 1.9953 3.9068 11 1 0.8471 2.1766 1.4919 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.2462 -0.8544 -3.5958 16 6 2.5508 -0.0841 -4.7119 17 6 3.0882 -0.6755 -5.8397 18 6 3.3163 -2.0364 -5.8689 19 6 3.0089 -2.8195 -4.7551 20 6 3.2517 -4.2777 -4.7838 21 7 3.7711 -4.8529 -5.8864 22 8 2.9828 -4.9578 -3.8129 23 6 2.4714 -2.2218 -3.6150 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9035 -0.5275 4.4375 28 1 1.0954 0.4977 -2.5447 29 1 2.3700 0.9805 -4.6967 30 1 3.3267 -0.0712 -6.7025 31 1 3.7328 -2.4953 -6.7533 32 1 3.9854 -4.3102 -6.6614 33 1 3.9300 -5.8095 -5.9054 34 1 2.2320 -2.8226 -2.7500 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596684207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:50 Heat of formation + Delta-G solvation = -41.743510 kcal Electronic energy + Delta-G solvation = -19069.062364 eV Core-core repulsion = 15967.057074 eV Total energy + Delta-G solvation = -3102.005290 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.42909 -39.31943 -37.77438 -34.50081 -33.96501 -33.61769 -31.37212 -31.01850 -29.21447 -25.19691 -24.23101 -23.79971 -21.98362 -20.56332 -19.50781 -18.41770 -17.04546 -16.79321 -16.38232 -16.11194 -15.60402 -14.94307 -14.75918 -14.60042 -14.05141 -13.93318 -13.52263 -13.32843 -12.89672 -12.47073 -12.35832 -11.96627 -11.69087 -11.51164 -11.07604 -10.67605 -10.38644 -10.14355 -9.99234 -9.79056 -9.68601 -9.15215 -9.04541 -8.75747 -8.60521 -8.00766 -6.07159 -4.08647 0.82899 1.37455 2.82984 3.21223 3.27352 3.33045 3.34587 3.39102 3.57250 3.94209 4.34989 4.71017 4.76735 4.99563 5.17899 5.21195 5.39228 5.52189 5.63061 5.91508 6.03236 6.18723 6.23159 6.31320 6.37415 6.42007 6.53137 6.65484 6.71363 7.08753 7.12824 7.24215 7.46247 7.87201 8.22151 8.49323 8.85545 9.12414 9.50213 11.05659 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030563 B = 0.004938 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.932212 B = 5668.501006 C = 6345.279603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.001 4.001 3 H 0.056 0.944 4 C -0.510 4.510 5 H 0.095 0.905 6 C 0.072 3.928 7 N -0.893 5.893 8 Si 0.884 3.116 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.524 3.476 13 O -0.501 6.501 14 N -0.690 5.690 15 C 0.156 3.844 16 C -0.129 4.129 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.123 4.123 20 C 0.562 3.438 21 N -0.855 5.855 22 O -0.528 6.528 23 C -0.065 4.065 24 H 0.033 0.967 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.265 0.735 28 H 0.408 0.592 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.399 0.601 33 H 0.403 0.597 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.484 2.337 -22.533 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.023 4.023 3 H 0.074 0.926 4 C -0.548 4.548 5 H 0.113 0.887 6 C -0.130 4.130 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.193 1.193 12 C 0.314 3.686 13 O -0.373 6.373 14 N -0.336 5.336 15 C 0.060 3.940 16 C -0.150 4.150 17 C -0.128 4.128 18 C -0.135 4.135 19 C -0.127 4.127 20 C 0.348 3.652 21 N -0.419 5.419 22 O -0.404 6.404 23 C -0.086 4.086 24 H 0.052 0.948 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.244 0.756 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.228 0.772 33 H 0.234 0.766 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -0.200 1.339 -21.389 21.432 hybrid contribution -0.692 1.167 -0.278 1.385 sum -0.892 2.506 -21.667 21.830 Atomic orbital electron populations 1.22157 0.97071 1.01826 0.99445 1.19335 0.93364 0.97627 0.91932 0.92602 1.20915 1.32449 1.14295 0.87118 0.88719 1.24971 0.95772 0.96562 0.95710 1.69877 1.45174 1.40084 0.97905 0.86916 0.80739 0.83735 0.77157 1.20436 1.22225 1.19259 1.21649 0.78887 0.84451 0.83617 1.90633 1.35884 1.24916 1.85842 1.44070 1.48439 1.36570 1.04569 1.17826 0.97087 0.91502 0.87589 1.21138 1.00687 0.99685 0.93506 1.20793 0.99633 0.94458 0.97931 1.21116 1.00990 0.94225 0.97179 1.19721 1.04622 0.92805 0.95549 1.18326 0.76577 0.87812 0.82522 1.43730 1.68144 1.12734 1.17330 1.90876 1.50672 1.64466 1.34392 1.21571 0.95694 0.93409 0.97924 0.94781 0.92092 0.92973 0.92466 0.75596 0.85319 0.85308 0.85962 0.77177 0.76616 0.82586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.57 37.16 0.32 -2.63 16 2 C 0.00 -0.02 2.24 -92.92 -0.21 -0.23 16 3 H 0.06 1.22 7.20 -51.92 -0.37 0.85 16 4 C -0.51 -14.67 8.96 -34.44 -0.31 -14.98 16 5 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 6 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 7 N -0.89 -27.62 13.96 55.43 0.77 -26.85 16 8 Si 0.88 21.02 24.37 -169.99 -4.14 16.88 16 9 H -0.28 -6.38 6.87 56.52 0.39 -5.99 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.27 -5.84 6.53 56.52 0.37 -5.47 16 12 C 0.52 11.36 6.99 -10.99 -0.08 11.28 16 13 O -0.50 -12.94 12.90 5.56 0.07 -12.86 16 14 N -0.69 -11.22 5.26 -9.89 -0.05 -11.28 16 15 C 0.16 2.41 6.29 -83.74 -0.53 1.88 16 16 C -0.13 -1.49 9.96 -39.31 -0.39 -1.88 16 17 C -0.11 -1.06 10.02 -39.67 -0.40 -1.45 16 18 C -0.12 -1.18 9.54 -39.16 -0.37 -1.55 16 19 C -0.12 -1.77 5.87 -104.99 -0.62 -2.38 16 20 C 0.56 8.26 8.05 -12.32 -0.10 8.16 16 21 N -0.85 -7.62 8.82 30.53 0.27 -7.35 16 22 O -0.53 -10.47 17.18 5.31 0.09 -10.38 16 23 C -0.06 -1.14 8.24 -38.98 -0.32 -1.46 16 24 H 0.03 0.52 7.47 -51.93 -0.39 0.13 16 25 H 0.06 1.25 8.14 -51.92 -0.42 0.82 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.41 5.14 8.11 -40.82 -0.33 4.81 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 31 H 0.12 0.76 6.40 -52.49 -0.34 0.43 16 32 H 0.40 2.18 6.86 -40.82 -0.28 1.90 16 33 H 0.40 3.03 8.93 -40.82 -0.36 2.67 16 34 H 0.16 3.37 5.82 -52.48 -0.31 3.07 16 LS Contribution 286.79 15.07 4.32 4.32 Total: -1.00 -37.04 286.79 -5.13 -42.17 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.36 Total: 8.61 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -3.10 Total: -3.26 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.99 Total: -45.48 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.16 Total: -23.24 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.14 Total: 16.88 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -37.04 -5.13 -42.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.425 kcal (2) G-P(sol) polarization free energy of solvation -37.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds