Wall clock time and date at job start Mon Mar 30 2020 05:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46586 * 2 1 4 4 C 1.50700 * 109.47120 * 119.99540 * 2 1 3 5 5 H 1.07994 * 119.99896 * 120.00696 * 4 2 1 6 6 C 1.37873 * 120.00034 * 299.99932 * 4 2 1 7 7 N 1.31513 * 120.00142 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00118 * 0.02562 * 6 4 2 9 9 H 1.48501 * 109.47355 * 89.99904 * 8 6 4 10 10 H 1.48506 * 109.47005 * 209.99545 * 8 6 4 11 11 H 1.48498 * 109.47066 * 329.99546 * 8 6 4 12 12 C 1.50695 * 109.47366 * 239.99942 * 2 1 3 13 13 O 1.21283 * 120.00070 * 239.99576 * 12 2 1 14 14 N 1.34782 * 120.00020 * 59.99680 * 12 2 1 15 15 C 1.39954 * 119.99779 * 175.67362 * 14 12 2 16 16 C 1.38992 * 119.99557 * 214.81432 * 15 14 12 17 17 C 1.38219 * 120.22217 * 179.76245 * 16 15 14 18 18 C 1.38023 * 120.21917 * 0.51082 * 17 16 15 19 19 C 1.39576 * 119.99665 * 359.74824 * 18 17 16 20 20 C 1.47860 * 120.10702 * 179.97438 * 19 18 17 21 21 N 1.34775 * 120.00592 * 0.02562 * 20 19 18 22 22 O 1.21558 * 119.99563 * 180.02562 * 20 19 18 23 23 C 1.38598 * 120.00405 * 35.08921 * 15 14 12 24 24 H 1.09001 * 109.47527 * 60.00835 * 1 2 3 25 25 H 1.09007 * 109.46658 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47551 * 299.99857 * 1 2 3 27 27 H 0.96995 * 120.00411 * 180.02562 * 7 6 4 28 28 H 0.97000 * 120.00083 * 355.39065 * 14 12 2 29 29 H 1.07996 * 119.88917 * 359.97438 * 16 15 14 30 30 H 1.07996 * 119.88906 * 180.25390 * 17 16 15 31 31 H 1.07999 * 119.99920 * 179.76202 * 18 17 16 32 32 H 0.97005 * 119.99784 * 359.97438 * 21 20 19 33 33 H 0.96994 * 120.00108 * 180.02562 * 21 20 19 34 34 H 1.08007 * 120.10698 * 359.95240 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1315 6 6 1.6993 -0.2392 2.4827 7 7 2.1381 -0.8587 3.5566 8 14 0.6248 1.2792 2.6540 9 1 -0.8028 0.8728 2.6998 10 1 0.9759 1.9953 3.9068 11 1 0.8471 2.1766 1.4919 12 6 2.0324 -0.7104 -1.2304 13 8 2.7297 -1.6964 -1.1191 14 7 1.7068 -0.2500 -2.4546 15 6 2.2462 -0.8544 -3.5958 16 6 2.5508 -0.0841 -4.7119 17 6 3.0882 -0.6755 -5.8397 18 6 3.3163 -2.0364 -5.8689 19 6 3.0089 -2.8195 -4.7551 20 6 3.2517 -4.2777 -4.7838 21 7 3.7711 -4.8529 -5.8864 22 8 2.9828 -4.9578 -3.8129 23 6 2.4714 -2.2218 -3.6150 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.9035 -0.5275 4.4375 28 1 1.0954 0.4977 -2.5447 29 1 2.3700 0.9805 -4.6967 30 1 3.3267 -0.0712 -6.7025 31 1 3.7328 -2.4953 -6.7533 32 1 3.9854 -4.3102 -6.6614 33 1 3.9300 -5.8095 -5.9054 34 1 2.2320 -2.8226 -2.7500 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596684207.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:49 Heat of formation + Delta-G solvation = -74.645694 kcal Electronic energy + Delta-G solvation = -19070.489110 eV Core-core repulsion = 15967.057074 eV Total energy + Delta-G solvation = -3103.432035 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69204 -40.66546 -39.01401 -35.89802 -35.85755 -34.74383 -33.37045 -32.00890 -30.39999 -27.16150 -25.38819 -25.27905 -23.27462 -21.67835 -21.06879 -19.49378 -18.85424 -18.07915 -17.85801 -17.18753 -16.95577 -16.57136 -16.24767 -15.87687 -15.36763 -15.24057 -14.93090 -14.74919 -14.46371 -14.08551 -13.70534 -13.45693 -12.87288 -12.82356 -12.66119 -12.56501 -12.13831 -11.50056 -11.44098 -11.27266 -11.20088 -10.79965 -10.79521 -10.52391 -9.93741 -9.17881 -8.28691 -6.38379 -0.18438 0.33498 1.33056 1.40343 1.51924 1.63487 1.89785 2.13346 2.33837 2.50471 2.89206 3.04662 3.82587 3.89338 4.04328 4.14928 4.25074 4.36544 4.47440 4.55028 4.58601 4.72001 4.91989 4.97921 5.30097 5.32286 5.35735 5.41043 5.48717 5.50903 5.82125 5.98876 6.21919 6.40398 6.56828 6.77991 7.21618 7.26754 7.35431 8.89496 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.030563 B = 0.004938 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.932212 B = 5668.501006 C = 6345.279603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.003 4.003 3 H 0.081 0.919 4 C -0.527 4.527 5 H 0.024 0.976 6 C 0.004 3.996 7 N -0.954 5.954 8 Si 0.965 3.035 9 H -0.260 1.260 10 H -0.299 1.299 11 H -0.223 1.223 12 C 0.522 3.478 13 O -0.562 6.562 14 N -0.666 5.666 15 C 0.122 3.878 16 C -0.109 4.109 17 C -0.096 4.096 18 C -0.090 4.090 19 C -0.144 4.144 20 C 0.554 3.446 21 N -0.821 5.821 22 O -0.599 6.599 23 C -0.106 4.106 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.268 0.732 28 H 0.429 0.571 29 H 0.167 0.833 30 H 0.183 0.817 31 H 0.172 0.828 32 H 0.420 0.580 33 H 0.413 0.587 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 6.418 -27.430 28.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.098 0.902 4 C -0.566 4.566 5 H 0.042 0.958 6 C -0.192 4.192 7 N -0.594 5.594 8 Si 0.789 3.211 9 H -0.186 1.186 10 H -0.227 1.227 11 H -0.146 1.146 12 C 0.312 3.688 13 O -0.438 6.438 14 N -0.314 5.314 15 C 0.028 3.972 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.109 4.109 19 C -0.147 4.147 20 C 0.341 3.659 21 N -0.386 5.386 22 O -0.481 6.481 23 C -0.127 4.127 24 H 0.110 0.890 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.268 0.732 29 H 0.184 0.816 30 H 0.200 0.800 31 H 0.189 0.811 32 H 0.254 0.746 33 H 0.245 0.755 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.175 5.451 -26.439 27.021 hybrid contribution -0.251 -0.223 1.047 1.099 sum -1.426 5.228 -25.393 25.965 Atomic orbital electron populations 1.22062 0.94109 1.01669 1.02115 1.19277 0.95601 0.97716 0.89893 0.90179 1.21084 1.31982 1.12905 0.90595 0.95798 1.26121 0.97461 1.01044 0.94590 1.70094 1.47559 1.42945 0.98820 0.85638 0.78509 0.78612 0.78362 1.18610 1.22714 1.14575 1.21456 0.78412 0.83694 0.85262 1.90641 1.38790 1.27446 1.86895 1.43542 1.48151 1.36435 1.03250 1.18039 0.99511 0.91055 0.88597 1.21581 0.98367 1.01104 0.91880 1.21456 0.96977 0.94368 0.98556 1.21669 0.98100 0.94552 0.96616 1.19799 1.05761 0.92907 0.96273 1.18650 0.76259 0.88230 0.82794 1.43431 1.65511 1.13490 1.16192 1.90845 1.54063 1.65892 1.37254 1.21290 0.99131 0.94591 0.97728 0.88960 0.93928 0.93111 0.92326 0.73166 0.81588 0.79964 0.81052 0.74605 0.75525 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.39 8.57 71.98 0.62 -4.78 16 2 C 0.00 -0.15 2.24 -12.29 -0.03 -0.18 16 3 H 0.08 3.31 7.20 -2.38 -0.02 3.29 16 4 C -0.53 -32.40 8.96 25.60 0.23 -32.17 16 5 H 0.02 1.75 7.00 -2.91 -0.02 1.73 16 6 C 0.00 0.25 5.45 84.65 0.46 0.71 16 7 N -0.95 -62.76 13.96 21.45 0.30 -62.46 16 8 Si 0.96 43.01 24.37 68.60 1.67 44.69 16 9 H -0.26 -10.87 6.87 99.48 0.68 -10.18 16 10 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.22 -8.33 6.53 99.48 0.65 -7.68 16 12 C 0.52 23.64 6.99 87.65 0.61 24.26 16 13 O -0.56 -32.10 12.90 -3.04 -0.04 -32.14 16 14 N -0.67 -21.14 5.26 -303.60 -1.60 -22.74 16 15 C 0.12 3.69 6.29 38.11 0.24 3.93 16 16 C -0.11 -1.99 9.96 22.45 0.22 -1.77 16 17 C -0.10 -1.23 10.02 22.21 0.22 -1.00 16 18 C -0.09 -1.42 9.54 22.54 0.21 -1.21 16 19 C -0.14 -4.09 5.87 -20.11 -0.12 -4.20 16 20 C 0.55 16.83 8.05 86.79 0.70 17.53 16 21 N -0.82 -13.27 8.82 -175.59 -1.55 -14.82 16 22 O -0.60 -26.14 17.18 -3.90 -0.07 -26.21 16 23 C -0.11 -3.96 8.24 22.66 0.19 -3.77 16 24 H 0.09 2.41 7.47 -2.39 -0.02 2.39 16 25 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.05 1.94 3.27 -2.39 -0.01 1.94 16 27 H 0.27 16.24 8.31 -92.71 -0.77 15.47 16 28 H 0.43 9.37 8.11 -92.71 -0.75 8.62 16 29 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 30 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 31 H 0.17 0.94 6.40 -2.91 -0.02 0.93 16 32 H 0.42 2.91 6.86 -92.70 -0.64 2.27 16 33 H 0.41 5.69 8.93 -92.71 -0.83 4.86 16 34 H 0.10 4.74 5.82 -2.91 -0.02 4.72 16 Total: -1.00 -97.81 286.79 1.17 -96.65 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: -1.11 Total: 19.68 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 3.56 Total: -2.65 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -2.85 Total: -100.01 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: -0.11 Total: -58.35 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.67 Total: 44.69 kcal Total: -97.81 1.17 -96.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596684207.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.000 kcal (2) G-P(sol) polarization free energy of solvation -97.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds