Wall clock time and date at job start Mon Mar 30 2020 05:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46571 * 2 1 4 4 C 1.52992 * 109.47140 * 119.99927 * 2 1 3 5 5 C 1.50702 * 109.47333 * 295.00176 * 4 2 1 6 6 C 1.34511 * 125.79077 * 90.00164 * 5 4 2 7 7 C 1.41383 * 106.84334 * 180.30077 * 6 5 4 8 8 C 1.34519 * 106.83593 * 359.56519 * 7 6 5 9 9 O 1.34297 * 108.41968 * 0.43566 * 8 7 6 10 10 C 1.50699 * 109.47084 * 240.00246 * 2 1 3 11 11 O 1.21291 * 119.99658 * 261.30054 * 10 2 1 12 12 N 1.34772 * 120.00260 * 81.29875 * 10 2 1 13 13 C 1.37095 * 120.00026 * 5.47607 * 12 10 2 14 14 H 1.07998 * 120.00080 * 5.26335 * 13 12 10 15 15 C 1.38949 * 120.00197 * 185.25859 * 13 12 10 16 16 N 1.31415 * 119.99990 * 25.13353 * 15 13 12 17 17 Si 1.86801 * 120.00226 * 205.13037 * 15 13 12 18 18 H 1.48506 * 109.47021 * 59.99851 * 17 15 13 19 19 H 1.48501 * 109.47498 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46910 * 300.00163 * 17 15 13 21 21 C 1.46505 * 120.00281 * 185.47692 * 12 10 2 22 22 C 1.47199 * 109.46902 * 92.09150 * 21 12 10 23 23 N 5.23158 * 76.54466 * 250.92788 * 2 1 3 24 24 H 1.09000 * 109.47243 * 185.73181 * 1 2 3 25 25 H 1.08996 * 109.47185 * 305.73213 * 1 2 3 26 26 H 1.09004 * 109.46952 * 65.72888 * 1 2 3 27 27 H 1.08997 * 109.47654 * 175.00043 * 4 2 1 28 28 H 1.09007 * 109.47324 * 54.99953 * 4 2 1 29 29 H 1.08006 * 126.57869 * 0.02800 * 6 5 4 30 30 H 1.07995 * 126.58170 * 179.73154 * 7 6 5 31 31 H 1.08003 * 125.78747 * 180.18672 * 8 7 6 32 32 H 0.97003 * 119.99532 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.47383 * 212.09588 * 21 12 10 34 34 H 1.08993 * 109.46542 * 332.09683 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 6 0.5009 -0.1009 3.1722 7 6 0.5362 0.8319 4.2340 8 6 1.7005 1.4975 4.1294 9 8 2.3640 1.0265 3.0610 10 6 2.0324 -0.7103 -1.2305 11 8 2.3843 -1.8690 -1.1606 12 7 2.0905 -0.0583 -2.4085 13 6 1.8002 1.2803 -2.4661 14 1 1.6082 1.8309 -1.5570 15 6 1.7532 1.9289 -3.6941 16 7 1.4921 1.2479 -4.7872 17 14 2.0612 3.7688 -3.7911 18 1 3.4216 4.0707 -3.2777 19 1 1.9554 4.2147 -5.2036 20 1 1.0519 4.4836 -2.9689 21 6 2.4639 -0.7799 -3.6276 22 6 1.2497 -1.2781 -4.2942 23 7 0.3127 -1.6625 -4.8087 24 1 -0.3634 -1.0225 0.1026 25 1 -0.3633 0.6001 0.8342 26 1 -0.3633 0.4224 -0.9369 27 1 3.1263 -0.7995 1.2056 28 1 1.6054 -1.7198 1.2952 29 1 -0.2919 -0.8024 2.9578 30 1 -0.2243 0.9797 4.9864 31 1 2.0419 2.2807 4.7901 32 1 1.4596 1.7007 -5.6445 33 1 2.9971 -0.1071 -4.2992 34 1 3.1075 -1.6207 -3.3693 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597032424.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:12:54 Heat of formation + Delta-G solvation = -2.417487 kcal Electronic energy + Delta-G solvation = -19518.959229 eV Core-core repulsion = 16418.659244 eV Total energy + Delta-G solvation = -3100.299985 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.40556 -40.85146 -37.67973 -36.29622 -35.89320 -33.69388 -33.49323 -31.02227 -29.25638 -27.46009 -26.72008 -23.91252 -22.52326 -21.31044 -20.79933 -19.43537 -18.52060 -17.90916 -17.72606 -16.87739 -16.32230 -16.12901 -15.84455 -15.38585 -15.03105 -14.62216 -14.42972 -13.80605 -13.71865 -13.59358 -13.50081 -13.36905 -13.14816 -13.03817 -12.91757 -12.69277 -12.38456 -12.18936 -12.15938 -12.04350 -11.69988 -11.10019 -10.72520 -10.33720 -10.02113 -9.25394 -8.39013 -5.88092 0.89939 1.43557 1.54558 1.62052 1.76677 1.81431 2.05211 2.22327 2.28829 2.37624 3.00610 3.10481 3.67834 3.88676 3.95521 4.15776 4.23651 4.28671 4.39334 4.50061 4.71332 4.79152 4.84088 4.93666 4.96751 5.04875 5.14876 5.19576 5.30696 5.36186 5.51363 5.64144 5.73092 6.34005 6.34202 7.00634 7.08208 7.46358 7.85828 8.64693 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.006364 C = 0.005289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.349295 B = 4398.959527 C = 5292.255538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 H 0.094 0.906 4 C -0.013 4.013 5 C -0.018 4.018 6 C -0.216 4.216 7 C -0.224 4.224 8 C -0.048 4.048 9 O -0.195 6.195 10 C 0.461 3.539 11 O -0.622 6.622 12 N -0.448 5.448 13 C -0.354 4.354 14 H 0.119 0.881 15 C 0.005 3.995 16 N -0.891 5.891 17 Si 0.983 3.017 18 H -0.263 1.263 19 H -0.290 1.290 20 H -0.271 1.271 21 C 0.226 3.774 22 C 0.269 3.731 23 N -0.518 5.518 24 H 0.053 0.947 25 H 0.079 0.921 26 H 0.046 0.954 27 H 0.076 0.924 28 H 0.097 0.903 29 H 0.154 0.846 30 H 0.169 0.831 31 H 0.236 0.764 32 H 0.274 0.726 33 H 0.130 0.870 34 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 4.130 13.813 14.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.103 4.103 3 H 0.112 0.888 4 C -0.051 4.051 5 C -0.068 4.068 6 C -0.235 4.235 7 C -0.242 4.242 8 C -0.115 4.115 9 O -0.091 6.091 10 C 0.252 3.748 11 O -0.510 6.510 12 N -0.167 5.167 13 C -0.480 4.480 14 H 0.136 0.864 15 C -0.198 4.198 16 N -0.529 5.529 17 Si 0.808 3.192 18 H -0.188 1.188 19 H -0.215 1.215 20 H -0.196 1.196 21 C 0.099 3.901 22 C -0.048 4.048 23 N -0.199 5.199 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.065 0.935 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.171 0.829 30 H 0.187 0.813 31 H 0.253 0.747 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.121 3.146 12.747 13.177 hybrid contribution 0.016 0.953 -0.378 1.025 sum 1.137 4.098 12.368 13.079 Atomic orbital electron populations 1.21610 0.92627 1.01958 1.02281 1.20962 0.97830 1.00471 0.91006 0.88784 1.19822 1.02092 0.96829 0.86345 1.22417 0.93063 0.93297 0.97989 1.21841 0.99120 1.04316 0.98253 1.22140 1.00243 0.99685 1.02172 1.24788 0.93493 1.02536 0.90645 1.84019 1.45296 1.43317 1.36510 1.20661 0.81926 0.86431 0.85786 1.90530 1.55082 1.18746 1.86604 1.43891 1.58918 1.09179 1.04665 1.20004 1.50078 0.82484 0.95426 0.86390 1.25910 0.95254 1.04161 0.94432 1.70020 1.43953 1.38855 1.00113 0.85121 0.79472 0.77674 0.76951 1.18759 1.21539 1.19565 1.18839 0.87525 0.97047 0.86690 1.29678 0.94835 0.88577 0.91710 1.80833 1.11828 1.15522 1.11707 0.92833 0.90249 0.93499 0.90536 0.88470 0.82860 0.81317 0.74742 0.91572 0.85229 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.28 8.68 71.98 0.62 -3.65 16 2 C -0.08 -2.91 1.91 -11.54 -0.02 -2.93 16 3 H 0.09 3.35 6.38 -2.39 -0.02 3.34 16 4 C -0.01 -0.42 4.62 29.85 0.14 -0.28 16 5 C -0.02 -0.51 6.06 24.83 0.15 -0.36 16 6 C -0.22 -5.44 9.56 22.19 0.21 -5.22 16 7 C -0.22 -4.66 10.91 22.19 0.24 -4.42 16 8 C -0.05 -0.98 12.09 66.97 0.81 -0.17 16 9 O -0.19 -5.39 10.65 -2.41 -0.03 -5.42 16 10 C 0.46 19.99 6.77 87.66 0.59 20.58 16 11 O -0.62 -29.34 15.67 -3.06 -0.05 -29.38 16 12 N -0.45 -20.23 2.59 -645.44 -1.67 -21.90 16 13 C -0.35 -15.93 8.74 84.04 0.73 -15.19 16 14 H 0.12 5.01 5.91 -2.91 -0.02 4.99 16 15 C 0.01 0.23 4.95 84.93 0.42 0.65 16 16 N -0.89 -43.06 9.02 21.66 0.20 -42.87 16 17 Si 0.98 36.55 29.62 68.60 2.03 38.58 16 18 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 19 H -0.29 -11.00 7.11 99.48 0.71 -10.29 16 20 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 21 C 0.23 9.88 5.26 84.57 0.44 10.32 16 22 C 0.27 13.07 13.59 89.44 1.22 14.28 16 23 N -0.52 -26.70 18.54 20.01 0.37 -26.33 16 24 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 2.31 6.77 -2.39 -0.02 2.29 16 26 H 0.05 1.79 7.68 -2.38 -0.02 1.77 16 27 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.10 3.06 8.05 -2.38 -0.02 3.04 16 29 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 30 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 31 H 0.24 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.27 12.90 8.31 -92.71 -0.77 12.13 16 33 H 0.13 5.61 6.22 -2.39 -0.01 5.59 16 34 H 0.11 4.27 7.29 -2.39 -0.02 4.25 16 Total: -1.00 -59.29 297.62 7.54 -51.75 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 1.12 Total: 21.96 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 5.56 Total: 13.61 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -1.10 Total: -91.09 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.07 Total: -34.80 kcal Atomic # 14 Polarization: 36.55 SS G_CDS: 2.03 Total: 38.58 kcal Total: -59.29 7.54 -51.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032424.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.330 kcal (2) G-P(sol) polarization free energy of solvation -59.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds