Wall clock time and date at job start Mon Mar 30 2020 05:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47029 * 2 1 4 4 C 1.50698 * 109.46913 * 119.99828 * 2 1 3 5 5 H 1.07999 * 120.00365 * 115.18398 * 4 2 1 6 6 C 1.37880 * 120.00039 * 295.17737 * 4 2 1 7 7 N 1.31515 * 120.00186 * 347.20864 * 6 4 2 8 8 Si 1.86802 * 120.00032 * 167.47871 * 6 4 2 9 9 H 1.48493 * 109.47577 * 179.72569 * 8 6 4 10 10 H 1.48500 * 109.47162 * 299.73215 * 8 6 4 11 11 H 1.48508 * 109.46831 * 59.72767 * 8 6 4 12 12 C 1.50693 * 109.47259 * 239.99855 * 2 1 3 13 13 O 1.21292 * 119.99975 * 259.17469 * 12 2 1 14 14 N 1.34777 * 120.00086 * 79.17578 * 12 2 1 15 15 C 1.47345 * 121.18955 * 2.95970 * 14 12 2 16 16 C 1.53547 * 107.52176 * 221.66066 * 15 14 12 17 17 O 1.42935 * 108.86028 * 301.76653 * 16 15 14 18 18 C 1.35784 * 117.79666 * 49.77022 * 17 16 15 19 19 N 1.32441 * 119.51591 * 159.60552 * 18 17 16 20 20 C 1.31924 * 121.80700 * 179.82658 * 19 18 17 21 21 C 1.38077 * 121.19618 * 0.02562 * 20 19 18 22 22 C 1.38847 * 119.14987 * 0.05319 * 21 20 19 23 23 C 1.38542 * 118.27066 * 359.71905 * 22 21 20 24 24 H 1.09004 * 109.47429 * 298.73783 * 1 2 3 25 25 H 1.09001 * 109.46923 * 58.73394 * 1 2 3 26 26 H 1.08998 * 109.47395 * 178.73561 * 1 2 3 27 27 H 0.97001 * 119.99779 * 354.90203 * 7 6 4 28 28 H 1.09000 * 109.84823 * 341.15674 * 15 14 12 29 29 H 1.09000 * 109.84910 * 102.15626 * 15 14 12 30 30 H 1.08998 * 109.56634 * 61.57459 * 16 15 14 31 31 H 1.08997 * 109.57343 * 181.95122 * 16 15 14 32 32 H 1.07996 * 119.39668 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.42397 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.87768 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5875 -1.6316 1.1334 6 6 1.7831 -0.1841 2.4803 7 7 1.3361 1.0471 2.5983 8 14 2.0876 -1.2174 4.0065 9 1 1.7507 -0.4249 5.2162 10 1 1.2370 -2.4336 3.9587 11 1 3.5175 -1.6152 4.0577 12 6 2.0323 -0.7104 -1.2304 13 8 2.4205 -1.8569 -1.1527 14 7 2.0503 -0.0718 -2.4171 15 6 1.6459 1.3406 -2.5298 16 6 0.7988 1.4787 -3.8030 17 8 1.5750 1.0482 -4.9234 18 6 2.2047 -0.1514 -4.8340 19 7 2.5830 -0.7738 -5.9402 20 6 3.2008 -1.9390 -5.9059 21 6 3.4813 -2.5647 -4.7075 22 6 3.1031 -1.9524 -3.5200 23 6 2.4604 -0.7271 -3.5893 24 1 -0.3634 0.4941 0.9011 25 1 -0.3633 0.5334 -0.8784 26 1 -0.3634 -1.0274 -0.0227 27 1 1.2518 1.6098 1.8127 28 1 1.0553 1.6270 -1.6596 29 1 2.5300 1.9740 -2.6030 30 1 -0.0933 0.8584 -3.7170 31 1 0.5096 2.5209 -3.9379 32 1 3.4916 -2.4122 -6.8320 33 1 3.9881 -3.5183 -4.6939 34 1 3.3083 -2.4172 -2.5670 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597344200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:30 Heat of formation + Delta-G solvation = -19.105705 kcal Electronic energy + Delta-G solvation = -20010.194686 eV Core-core repulsion = 16909.171045 eV Total energy + Delta-G solvation = -3101.023641 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.36279 -39.04290 -38.22649 -35.23906 -34.51072 -31.95035 -31.16814 -30.28070 -28.25313 -25.16209 -24.72190 -24.16847 -22.60798 -21.38219 -19.35098 -18.38621 -17.48368 -17.06451 -16.57494 -15.99408 -15.34809 -15.20257 -14.80929 -14.48112 -13.86497 -13.80856 -13.46717 -13.11814 -12.97222 -12.79358 -12.21009 -11.63283 -11.44946 -11.38008 -11.19389 -11.12159 -10.78921 -10.58378 -10.40747 -10.14460 -9.75074 -9.10088 -8.89360 -8.54054 -8.43913 -7.76793 -6.53624 -4.23997 1.17554 1.42548 2.74119 2.96086 3.15116 3.39866 3.41633 3.60381 3.94444 4.35910 4.43056 4.57021 4.80308 4.93179 5.02194 5.10017 5.16664 5.25315 5.33983 5.48607 5.55757 5.63652 6.02844 6.11749 6.26509 6.37141 6.40107 6.42334 6.71413 6.81774 7.14800 7.19767 7.42925 7.87337 8.07508 8.36636 8.63708 8.69221 9.42699 10.83007 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031534 B = 0.005969 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.703734 B = 4689.536912 C = 5406.766844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.022 3.978 3 H 0.044 0.956 4 C -0.591 4.591 5 H 0.068 0.932 6 C 0.028 3.972 7 N -0.904 5.904 8 Si 1.066 2.934 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.287 1.287 12 C 0.533 3.467 13 O -0.511 6.511 14 N -0.565 5.565 15 C 0.062 3.938 16 C 0.054 3.946 17 O -0.302 6.302 18 C 0.288 3.712 19 N -0.483 5.483 20 C 0.097 3.903 21 C -0.181 4.181 22 C -0.087 4.087 23 C 0.055 3.945 24 H 0.072 0.928 25 H 0.022 0.978 26 H 0.047 0.953 27 H 0.267 0.733 28 H 0.120 0.880 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.160 0.840 33 H 0.138 0.862 34 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 -0.086 -12.087 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.001 3.999 3 H 0.062 0.938 4 C -0.629 4.629 5 H 0.086 0.914 6 C -0.177 4.177 7 N -0.539 5.539 8 Si 0.894 3.106 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.213 1.213 12 C 0.326 3.674 13 O -0.385 6.385 14 N -0.291 5.291 15 C -0.061 4.061 16 C -0.023 4.023 17 O -0.211 6.211 18 C 0.106 3.894 19 N -0.202 5.202 20 C -0.060 4.060 21 C -0.202 4.202 22 C -0.115 4.115 23 C -0.043 4.043 24 H 0.091 0.909 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.138 0.862 29 H 0.105 0.895 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.177 0.823 33 H 0.156 0.844 34 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.205 -0.113 -11.185 11.187 hybrid contribution 0.269 -0.323 -0.810 0.913 sum 0.064 -0.436 -11.995 12.003 Atomic orbital electron populations 1.21857 0.96421 1.00986 1.00236 1.19013 0.93866 0.96879 0.90152 0.93791 1.21810 1.39636 1.11229 0.90258 0.91385 1.25823 0.93593 0.97058 1.01203 1.70853 1.43026 1.06442 1.33577 0.83584 0.76633 0.75141 0.75270 1.20739 1.21199 1.21291 1.22073 0.75545 0.86669 0.83101 1.90331 1.45550 1.18489 1.84157 1.46289 1.64284 1.12071 1.06431 1.22795 1.00900 0.81911 1.00477 1.23419 0.92730 1.02233 0.83913 1.85888 1.62343 1.31166 1.41751 1.19059 0.95439 0.87500 0.87429 1.66817 1.14453 1.10020 1.28908 1.22346 0.95785 0.89616 0.98208 1.22082 1.03283 1.02058 0.92729 1.22552 0.93753 0.93061 1.02093 1.19008 1.02216 0.96509 0.86583 0.90908 0.95879 0.93376 0.92175 0.86190 0.89469 0.90877 0.85312 0.82288 0.84411 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.68 37.16 0.32 -2.53 16 2 C 0.02 0.51 1.41 -92.93 -0.13 0.38 16 3 H 0.04 1.01 6.16 -51.93 -0.32 0.69 16 4 C -0.59 -15.98 8.28 -34.44 -0.29 -16.26 16 5 H 0.07 1.95 6.92 -52.49 -0.36 1.59 16 6 C 0.03 0.75 5.13 -17.82 -0.09 0.65 16 7 N -0.90 -24.93 12.84 55.43 0.71 -24.22 16 8 Si 1.07 24.34 29.92 -169.99 -5.09 19.26 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.53 11.69 6.81 -10.99 -0.07 11.62 16 13 O -0.51 -12.39 12.40 5.55 0.07 -12.32 16 14 N -0.56 -10.37 3.01 -112.27 -0.34 -10.71 16 15 C 0.06 0.88 6.12 -3.30 -0.02 0.86 16 16 C 0.05 0.65 7.17 37.44 0.27 0.92 16 17 O -0.30 -4.72 10.40 -19.06 -0.20 -4.92 16 18 C 0.29 4.97 7.58 -16.82 -0.13 4.84 16 19 N -0.48 -7.99 10.38 -13.11 -0.14 -8.13 16 20 C 0.10 1.32 11.16 -17.57 -0.20 1.13 16 21 C -0.18 -2.52 10.12 -39.42 -0.40 -2.92 16 22 C -0.09 -1.53 9.10 -39.24 -0.36 -1.89 16 23 C 0.05 1.00 6.34 -83.34 -0.53 0.47 16 24 H 0.07 1.63 6.71 -51.93 -0.35 1.28 16 25 H 0.02 0.39 6.77 -51.93 -0.35 0.03 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.27 7.15 6.56 -40.82 -0.27 6.88 16 28 H 0.12 1.63 4.88 -51.93 -0.25 1.38 16 29 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.13 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.16 1.54 8.06 -52.49 -0.42 1.12 16 33 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.18 3.53 5.03 -53.01 -0.27 3.27 16 LS Contribution 279.91 15.07 4.22 4.22 Total: -1.00 -31.88 279.91 -5.88 -37.76 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -3.50 Total: 1.81 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.62 Total: -2.75 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.24 Total: -43.06 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.13 Total: -17.24 kcal Atomic # 14 Polarization: 24.34 SS G_CDS: -5.09 Total: 19.26 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.88 -5.88 -37.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597344200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.653 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds