Wall clock time and date at job start Mon Mar 30 2020 05:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47029 * 2 1 4 4 C 1.50698 * 109.46913 * 119.99828 * 2 1 3 5 5 H 1.07999 * 120.00365 * 115.18398 * 4 2 1 6 6 C 1.37880 * 120.00039 * 295.17737 * 4 2 1 7 7 N 1.31515 * 120.00186 * 347.20864 * 6 4 2 8 8 Si 1.86802 * 120.00032 * 167.47871 * 6 4 2 9 9 H 1.48493 * 109.47577 * 179.72569 * 8 6 4 10 10 H 1.48500 * 109.47162 * 299.73215 * 8 6 4 11 11 H 1.48508 * 109.46831 * 59.72767 * 8 6 4 12 12 C 1.50693 * 109.47259 * 239.99855 * 2 1 3 13 13 O 1.21292 * 119.99975 * 259.17469 * 12 2 1 14 14 N 1.34777 * 120.00086 * 79.17578 * 12 2 1 15 15 C 1.47345 * 121.18955 * 2.95970 * 14 12 2 16 16 C 1.53547 * 107.52176 * 221.66066 * 15 14 12 17 17 O 1.42935 * 108.86028 * 301.76653 * 16 15 14 18 18 C 1.35784 * 117.79666 * 49.77022 * 17 16 15 19 19 N 1.32441 * 119.51591 * 159.60552 * 18 17 16 20 20 C 1.31924 * 121.80700 * 179.82658 * 19 18 17 21 21 C 1.38077 * 121.19618 * 0.02562 * 20 19 18 22 22 C 1.38847 * 119.14987 * 0.05319 * 21 20 19 23 23 C 1.38542 * 118.27066 * 359.71905 * 22 21 20 24 24 H 1.09004 * 109.47429 * 298.73783 * 1 2 3 25 25 H 1.09001 * 109.46923 * 58.73394 * 1 2 3 26 26 H 1.08998 * 109.47395 * 178.73561 * 1 2 3 27 27 H 0.97001 * 119.99779 * 354.90203 * 7 6 4 28 28 H 1.09000 * 109.84823 * 341.15674 * 15 14 12 29 29 H 1.09000 * 109.84910 * 102.15626 * 15 14 12 30 30 H 1.08998 * 109.56634 * 61.57459 * 16 15 14 31 31 H 1.08997 * 109.57343 * 181.95122 * 16 15 14 32 32 H 1.07996 * 119.39668 * 179.97438 * 20 19 18 33 33 H 1.07997 * 120.42397 * 180.02562 * 21 20 19 34 34 H 1.07997 * 120.87768 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.5875 -1.6316 1.1334 6 6 1.7831 -0.1841 2.4803 7 7 1.3361 1.0471 2.5983 8 14 2.0876 -1.2174 4.0065 9 1 1.7507 -0.4249 5.2162 10 1 1.2370 -2.4336 3.9587 11 1 3.5175 -1.6152 4.0577 12 6 2.0323 -0.7104 -1.2304 13 8 2.4205 -1.8569 -1.1527 14 7 2.0503 -0.0718 -2.4171 15 6 1.6459 1.3406 -2.5298 16 6 0.7988 1.4787 -3.8030 17 8 1.5750 1.0482 -4.9234 18 6 2.2047 -0.1514 -4.8340 19 7 2.5830 -0.7738 -5.9402 20 6 3.2008 -1.9390 -5.9059 21 6 3.4813 -2.5647 -4.7075 22 6 3.1031 -1.9524 -3.5200 23 6 2.4604 -0.7271 -3.5893 24 1 -0.3634 0.4941 0.9011 25 1 -0.3633 0.5334 -0.8784 26 1 -0.3634 -1.0274 -0.0227 27 1 1.2518 1.6098 1.8127 28 1 1.0553 1.6270 -1.6596 29 1 2.5300 1.9740 -2.6030 30 1 -0.0933 0.8584 -3.7170 31 1 0.5096 2.5209 -3.9379 32 1 3.4916 -2.4122 -6.8320 33 1 3.9881 -3.5183 -4.6939 34 1 3.3083 -2.4172 -2.5670 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597344200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:30 Heat of formation + Delta-G solvation = -41.946217 kcal Electronic energy + Delta-G solvation = -20011.185125 eV Core-core repulsion = 16909.171045 eV Total energy + Delta-G solvation = -3102.014080 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.66469 -40.55110 -39.39093 -36.67820 -36.40010 -33.37155 -32.45380 -31.86001 -29.54293 -27.10417 -25.91873 -25.56568 -24.17727 -22.69884 -20.88003 -19.61739 -18.93944 -18.55592 -18.28097 -17.32025 -16.63660 -16.48662 -16.23107 -15.82800 -15.52794 -15.26643 -14.91294 -14.48958 -14.40668 -14.24777 -13.63340 -13.17150 -13.08776 -13.02208 -12.70379 -12.52996 -12.35817 -12.25096 -11.94145 -11.78967 -11.14471 -10.84855 -10.47787 -10.35818 -10.03673 -9.06578 -8.66588 -6.36489 -0.04890 0.15671 1.47246 1.52608 1.55109 1.59298 1.76558 1.80840 2.53955 2.72551 3.10259 3.19256 3.39095 3.66099 3.83829 3.89893 3.96411 4.08836 4.14252 4.34182 4.41234 4.48345 4.52096 4.59874 4.67494 4.77049 5.05180 5.16156 5.24505 5.39068 5.49805 5.78111 5.95271 6.08349 6.20180 6.60318 6.88798 6.99802 7.34657 8.72641 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.031534 B = 0.005969 C = 0.005177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.703734 B = 4689.536912 C = 5406.766844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.020 3.980 3 H 0.047 0.953 4 C -0.612 4.612 5 H 0.041 0.959 6 C -0.009 4.009 7 N -0.918 5.918 8 Si 1.104 2.896 9 H -0.276 1.276 10 H -0.277 1.277 11 H -0.279 1.279 12 C 0.530 3.470 13 O -0.548 6.548 14 N -0.562 5.562 15 C 0.053 3.947 16 C 0.056 3.944 17 O -0.309 6.309 18 C 0.283 3.717 19 N -0.500 5.500 20 C 0.110 3.890 21 C -0.171 4.171 22 C -0.108 4.108 23 C 0.026 3.974 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.033 0.967 27 H 0.265 0.735 28 H 0.125 0.875 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.175 0.825 32 H 0.206 0.794 33 H 0.172 0.828 34 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.240 0.180 -13.839 13.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.002 4.002 3 H 0.064 0.936 4 C -0.650 4.650 5 H 0.059 0.941 6 C -0.209 4.209 7 N -0.554 5.554 8 Si 0.926 3.074 9 H -0.201 1.201 10 H -0.203 1.203 11 H -0.205 1.205 12 C 0.322 3.678 13 O -0.425 6.425 14 N -0.287 5.287 15 C -0.068 4.068 16 C -0.019 4.019 17 O -0.219 6.219 18 C 0.102 3.898 19 N -0.220 5.220 20 C -0.046 4.046 21 C -0.191 4.191 22 C -0.136 4.136 23 C -0.071 4.071 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.143 0.857 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.193 0.807 32 H 0.223 0.777 33 H 0.189 0.811 34 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.422 0.195 -12.979 12.987 hybrid contribution 0.383 -0.422 -0.399 0.696 sum -0.038 -0.226 -13.378 13.380 Atomic orbital electron populations 1.21678 0.94725 1.00488 1.01310 1.18935 0.95136 0.96434 0.89648 0.93571 1.22006 1.39903 1.10671 0.92396 0.94084 1.26888 0.93042 0.97441 1.03573 1.70925 1.44097 1.06835 1.33556 0.83089 0.77088 0.74339 0.72835 1.20143 1.20299 1.20477 1.21774 0.75646 0.86301 0.84041 1.90330 1.47246 1.19867 1.85053 1.46134 1.63618 1.13397 1.05569 1.23107 1.01927 0.79748 1.02001 1.23744 0.91605 1.04777 0.81779 1.85888 1.62471 1.30429 1.43090 1.19197 0.95549 0.87960 0.87095 1.66966 1.15225 1.11204 1.28558 1.23130 0.93349 0.88392 0.99735 1.22421 1.02273 1.02972 0.91478 1.22502 0.94950 0.93584 1.02560 1.19163 1.03976 0.97281 0.86716 0.92531 0.91788 0.94753 0.92478 0.85697 0.88499 0.90624 0.80744 0.77748 0.81051 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.17 8.68 71.98 0.62 -4.54 16 2 C 0.02 0.93 1.41 -12.29 -0.02 0.91 16 3 H 0.05 2.14 6.16 -2.39 -0.01 2.12 16 4 C -0.61 -34.00 8.28 25.60 0.21 -33.79 16 5 H 0.04 2.46 6.92 -2.91 -0.02 2.44 16 6 C -0.01 -0.48 5.13 84.66 0.43 -0.04 16 7 N -0.92 -50.92 12.84 21.45 0.28 -50.64 16 8 Si 1.10 49.43 29.92 68.60 2.05 51.48 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 11 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 12 C 0.53 23.84 6.81 87.65 0.60 24.43 16 13 O -0.55 -27.79 12.40 -3.07 -0.04 -27.83 16 14 N -0.56 -20.64 3.01 -627.50 -1.89 -22.53 16 15 C 0.05 1.44 6.12 86.40 0.53 1.96 16 16 C 0.06 1.22 7.17 72.17 0.52 1.73 16 17 O -0.31 -9.01 10.40 -91.13 -0.95 -9.96 16 18 C 0.28 9.37 7.58 84.91 0.64 10.02 16 19 N -0.50 -15.37 10.38 -308.12 -3.20 -18.57 16 20 C 0.11 2.65 11.16 84.64 0.94 3.59 16 21 C -0.17 -4.42 10.12 22.38 0.23 -4.19 16 22 C -0.11 -3.82 9.10 22.49 0.20 -3.62 16 23 C 0.03 0.94 6.34 38.14 0.24 1.18 16 24 H 0.06 2.53 6.71 -2.39 -0.02 2.51 16 25 H 0.06 2.09 6.77 -2.39 -0.02 2.07 16 26 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.26 14.28 6.56 -92.71 -0.61 13.67 16 28 H 0.13 3.20 4.88 -2.39 -0.01 3.18 16 29 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.18 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.21 2.94 8.06 -2.91 -0.02 2.92 16 33 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.16 6.35 5.03 -11.18 -0.06 6.29 16 Total: -1.00 -71.10 279.91 2.67 -68.43 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.25 Total: 11.96 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.16 Total: -2.35 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.81 Total: -91.74 kcal Atomic # 8 Polarization: -36.80 SS G_CDS: -0.99 Total: -37.79 kcal Atomic # 14 Polarization: 49.43 SS G_CDS: 2.05 Total: 51.48 kcal Total: -71.10 2.67 -68.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597344200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.485 kcal (2) G-P(sol) polarization free energy of solvation -71.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds