Wall clock time and date at job start Mon Mar 30 2020 05:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47092 * 2 1 4 4 C 1.50702 * 109.46837 * 240.00533 * 2 1 3 5 5 H 1.08006 * 119.99567 * 239.99296 * 4 2 1 6 6 C 1.37869 * 120.00549 * 60.00207 * 4 2 1 7 7 N 1.31522 * 119.99665 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00452 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46936 * 269.99495 * 8 6 4 10 10 H 1.48498 * 109.47197 * 29.99400 * 8 6 4 11 11 H 1.48505 * 109.47120 * 149.99586 * 8 6 4 12 12 C 1.50703 * 109.47414 * 120.00558 * 2 1 3 13 13 O 1.21291 * 120.00127 * 95.15796 * 12 2 1 14 14 N 1.34782 * 119.99500 * 275.16114 * 12 2 1 15 15 C 1.47368 * 121.23477 * 4.60353 * 14 12 2 16 16 C 1.53525 * 107.67496 * 221.93042 * 15 14 12 17 17 O 1.43046 * 108.89431 * 301.81397 * 16 15 14 18 18 C 1.35422 * 117.65425 * 49.19570 * 17 16 15 19 19 C 1.39002 * 120.66410 * 160.09725 * 18 17 16 20 20 C 1.38158 * 118.90244 * 179.88790 * 19 18 17 21 21 N 1.31945 * 121.12319 * 359.97438 * 20 19 18 22 22 C 1.32098 * 121.93263 * 0.04362 * 21 20 19 23 23 C 1.38194 * 120.37603 * 359.75559 * 22 21 20 24 24 H 1.08995 * 109.47066 * 53.89872 * 1 2 3 25 25 H 1.08997 * 109.47049 * 173.90095 * 1 2 3 26 26 H 1.09000 * 109.46775 * 293.90110 * 1 2 3 27 27 H 0.96997 * 119.99801 * 180.02562 * 7 6 4 28 28 H 1.08991 * 109.82492 * 341.47717 * 15 14 12 29 29 H 1.09006 * 109.81417 * 102.39456 * 15 14 12 30 30 H 1.08997 * 109.56427 * 61.64065 * 16 15 14 31 31 H 1.09002 * 109.56486 * 181.98937 * 16 15 14 32 32 H 1.08003 * 120.54998 * 359.87502 * 19 18 17 33 33 H 1.08003 * 119.44147 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.82337 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 3.6295 -0.5456 -4.4125 10 1 2.4858 -2.5660 -3.7122 11 1 1.3429 -0.9489 -5.1121 12 6 2.0324 -0.7105 1.2304 13 8 2.3236 -1.8867 1.1751 14 7 2.1581 -0.0390 2.3922 15 6 1.7184 1.3621 2.5164 16 6 2.7838 2.1149 3.3259 17 8 2.9311 1.4812 4.5998 18 6 3.0918 0.1367 4.6181 19 6 3.6404 -0.4967 5.7273 20 6 3.7856 -1.8705 5.7078 21 7 3.4133 -2.5809 4.6601 22 6 2.8882 -2.0192 3.5860 23 6 2.7069 -0.6503 3.5310 24 1 -0.3633 0.6055 -0.8303 25 1 -0.3633 -1.0218 -0.1092 26 1 -0.3633 0.4164 0.9396 27 1 0.7082 1.1611 -3.4843 28 1 1.6225 1.8085 1.5267 29 1 0.7612 1.4043 3.0361 30 1 3.7340 2.0880 2.7926 31 1 2.4715 3.1497 3.4668 32 1 3.9481 0.0757 6.5899 33 1 4.2112 -2.3715 6.5648 34 1 2.5949 -2.6336 2.7476 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597356103.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:33 Heat of formation + Delta-G solvation = -21.752856 kcal Electronic energy + Delta-G solvation = -19947.736010 eV Core-core repulsion = 16846.597580 eV Total energy + Delta-G solvation = -3101.138430 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.33003 -38.89601 -38.33965 -35.12075 -34.07156 -31.78983 -31.16833 -30.18688 -28.31446 -25.35968 -24.72609 -24.07962 -22.65982 -21.07245 -19.16940 -18.33842 -17.24826 -17.11797 -16.11635 -15.75887 -15.35960 -15.00949 -14.71994 -14.37081 -14.24451 -13.91243 -13.54086 -13.08730 -12.93192 -12.56066 -12.12613 -11.72502 -11.53314 -11.31495 -11.08949 -10.89634 -10.81575 -10.46271 -10.19812 -10.07604 -9.38718 -9.16877 -8.90939 -8.71041 -8.47534 -7.76797 -6.19676 -4.23754 1.29255 1.40502 2.86797 3.22651 3.25346 3.28367 3.31953 3.40479 4.05202 4.34005 4.43727 4.66892 4.79793 4.92630 5.04127 5.15059 5.20459 5.26014 5.46900 5.52943 5.67046 5.76851 5.98900 6.21827 6.38384 6.48745 6.60825 6.74633 6.94137 7.20278 7.28492 7.51671 7.63996 7.85731 8.07864 8.23961 8.74554 8.83494 9.42198 10.88193 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.005948 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.436173 B = 4706.703244 C = 5286.986509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.037 3.963 3 H 0.051 0.949 4 C -0.507 4.507 5 H 0.072 0.928 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.285 1.285 12 C 0.527 3.473 13 O -0.514 6.514 14 N -0.563 5.563 15 C 0.064 3.936 16 C 0.045 3.955 17 O -0.310 6.310 18 C 0.121 3.879 19 C -0.185 4.185 20 C 0.090 3.910 21 N -0.485 5.485 22 C 0.094 3.906 23 C 0.042 3.958 24 H 0.095 0.905 25 H 0.040 0.960 26 H 0.012 0.988 27 H 0.263 0.737 28 H 0.124 0.876 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.157 0.843 34 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 4.363 12.643 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.017 3.983 3 H 0.069 0.931 4 C -0.545 4.545 5 H 0.090 0.910 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.730 3.270 9 H -0.206 1.206 10 H -0.196 1.196 11 H -0.211 1.211 12 C 0.321 3.679 13 O -0.388 6.388 14 N -0.289 5.289 15 C -0.059 4.059 16 C -0.030 4.030 17 O -0.222 6.222 18 C 0.065 3.935 19 C -0.206 4.206 20 C -0.068 4.068 21 N -0.196 5.196 22 C -0.064 4.064 23 C -0.056 4.056 24 H 0.113 0.887 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.103 0.897 30 H 0.092 0.908 31 H 0.142 0.858 32 H 0.158 0.842 33 H 0.174 0.826 34 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.028 3.120 12.498 13.040 hybrid contribution 0.149 0.755 -0.947 1.220 sum 2.178 3.874 11.551 12.377 Atomic orbital electron populations 1.21743 0.95532 1.01610 0.99977 1.18943 0.94605 0.96529 0.88267 0.93148 1.21026 1.31852 1.12884 0.88785 0.90979 1.24920 0.94805 0.94975 0.99166 1.69861 1.36537 1.22902 1.23929 0.86403 0.78475 0.80351 0.81780 1.20570 1.19566 1.21091 1.22493 0.74870 0.87390 0.83165 1.90324 1.48409 1.16671 1.83391 1.46320 1.60220 1.13198 1.09208 1.22768 0.97729 0.81209 1.04204 1.23428 0.99784 0.97072 0.82742 1.85922 1.87646 1.16963 1.31660 1.18813 0.97094 0.82762 0.94805 1.21392 1.04522 0.95926 0.98729 1.22562 0.97421 0.89942 0.96858 1.67943 1.11470 1.39975 1.00261 1.24102 0.94508 0.90858 0.96940 1.19348 1.02436 0.94372 0.89406 0.88669 0.94113 0.96896 0.92692 0.85834 0.89735 0.90775 0.85769 0.84195 0.82572 0.78306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 8.82 37.16 0.33 -2.54 16 2 C 0.04 0.87 1.83 -92.92 -0.17 0.70 16 3 H 0.05 1.16 6.35 -51.93 -0.33 0.83 16 4 C -0.51 -13.62 8.33 -34.44 -0.29 -13.90 16 5 H 0.07 2.05 7.03 -52.48 -0.37 1.68 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.67 11.39 55.43 0.63 -23.04 16 8 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.53 11.64 6.76 -10.98 -0.07 11.56 16 13 O -0.51 -12.61 12.60 5.55 0.07 -12.54 16 14 N -0.56 -10.39 3.01 -112.32 -0.34 -10.72 16 15 C 0.06 0.90 5.97 -3.30 -0.02 0.88 16 16 C 0.05 0.54 7.18 37.43 0.27 0.81 16 17 O -0.31 -4.36 10.35 -17.96 -0.19 -4.54 16 18 C 0.12 1.90 6.55 -38.78 -0.25 1.65 16 19 C -0.18 -2.49 10.08 -39.33 -0.40 -2.88 16 20 C 0.09 1.25 11.16 -17.53 -0.20 1.06 16 21 N -0.48 -8.47 10.36 -13.20 -0.14 -8.60 16 22 C 0.09 1.80 10.22 -17.45 -0.18 1.62 16 23 C 0.04 0.77 6.34 -83.42 -0.53 0.24 16 24 H 0.09 2.25 6.26 -51.93 -0.32 1.92 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.01 0.23 7.62 -51.93 -0.40 -0.17 16 27 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 28 H 0.12 1.73 5.71 -51.93 -0.30 1.43 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 33 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 34 H 0.20 4.24 4.99 -53.00 -0.26 3.98 16 LS Contribution 282.05 15.07 4.25 4.25 Total: -1.00 -30.22 282.05 -5.98 -36.21 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.65 Total: 2.33 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: -1.60 Total: 0.75 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.16 Total: -42.37 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.12 Total: -17.08 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -30.22 -5.98 -36.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597356103.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.453 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds