Wall clock time and date at job start Mon Mar 30 2020 05:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47092 * 2 1 4 4 C 1.50702 * 109.46837 * 240.00533 * 2 1 3 5 5 H 1.08006 * 119.99567 * 239.99296 * 4 2 1 6 6 C 1.37869 * 120.00549 * 60.00207 * 4 2 1 7 7 N 1.31522 * 119.99665 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00452 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46936 * 269.99495 * 8 6 4 10 10 H 1.48498 * 109.47197 * 29.99400 * 8 6 4 11 11 H 1.48505 * 109.47120 * 149.99586 * 8 6 4 12 12 C 1.50703 * 109.47414 * 120.00558 * 2 1 3 13 13 O 1.21291 * 120.00127 * 95.15796 * 12 2 1 14 14 N 1.34782 * 119.99500 * 275.16114 * 12 2 1 15 15 C 1.47368 * 121.23477 * 4.60353 * 14 12 2 16 16 C 1.53525 * 107.67496 * 221.93042 * 15 14 12 17 17 O 1.43046 * 108.89431 * 301.81397 * 16 15 14 18 18 C 1.35422 * 117.65425 * 49.19570 * 17 16 15 19 19 C 1.39002 * 120.66410 * 160.09725 * 18 17 16 20 20 C 1.38158 * 118.90244 * 179.88790 * 19 18 17 21 21 N 1.31945 * 121.12319 * 359.97438 * 20 19 18 22 22 C 1.32098 * 121.93263 * 0.04362 * 21 20 19 23 23 C 1.38194 * 120.37603 * 359.75559 * 22 21 20 24 24 H 1.08995 * 109.47066 * 53.89872 * 1 2 3 25 25 H 1.08997 * 109.47049 * 173.90095 * 1 2 3 26 26 H 1.09000 * 109.46775 * 293.90110 * 1 2 3 27 27 H 0.96997 * 119.99801 * 180.02562 * 7 6 4 28 28 H 1.08991 * 109.82492 * 341.47717 * 15 14 12 29 29 H 1.09006 * 109.81417 * 102.39456 * 15 14 12 30 30 H 1.08997 * 109.56427 * 61.64065 * 16 15 14 31 31 H 1.09002 * 109.56486 * 181.98937 * 16 15 14 32 32 H 1.08003 * 120.54998 * 359.87502 * 19 18 17 33 33 H 1.08003 * 119.44147 * 179.97438 * 20 19 18 34 34 H 1.07996 * 119.82337 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8299 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 3.6295 -0.5456 -4.4125 10 1 2.4858 -2.5660 -3.7122 11 1 1.3429 -0.9489 -5.1121 12 6 2.0324 -0.7105 1.2304 13 8 2.3236 -1.8867 1.1751 14 7 2.1581 -0.0390 2.3922 15 6 1.7184 1.3621 2.5164 16 6 2.7838 2.1149 3.3259 17 8 2.9311 1.4812 4.5998 18 6 3.0918 0.1367 4.6181 19 6 3.6404 -0.4967 5.7273 20 6 3.7856 -1.8705 5.7078 21 7 3.4133 -2.5809 4.6601 22 6 2.8882 -2.0192 3.5860 23 6 2.7069 -0.6503 3.5310 24 1 -0.3633 0.6055 -0.8303 25 1 -0.3633 -1.0218 -0.1092 26 1 -0.3633 0.4164 0.9396 27 1 0.7082 1.1611 -3.4843 28 1 1.6225 1.8085 1.5267 29 1 0.7612 1.4043 3.0361 30 1 3.7340 2.0880 2.7926 31 1 2.4715 3.1497 3.4668 32 1 3.9481 0.0757 6.5899 33 1 4.2112 -2.3715 6.5648 34 1 2.5949 -2.6336 2.7476 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597356103.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:33 Heat of formation + Delta-G solvation = -41.860816 kcal Electronic energy + Delta-G solvation = -19948.607957 eV Core-core repulsion = 16846.597580 eV Total energy + Delta-G solvation = -3102.010376 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.61953 -40.42045 -39.50964 -36.55860 -35.97392 -33.09680 -32.73381 -31.59718 -29.61477 -27.33356 -25.90792 -25.51548 -24.17139 -22.39217 -20.65571 -19.53457 -18.82330 -18.40418 -17.92040 -17.14212 -16.88730 -16.47303 -16.13945 -15.63222 -15.49779 -15.22565 -14.97624 -14.67636 -14.39391 -14.09856 -13.55934 -13.29323 -12.98558 -12.81094 -12.70854 -12.54768 -12.47425 -12.30538 -12.10169 -11.45158 -11.11642 -10.71611 -10.56846 -10.27925 -9.97944 -9.13207 -8.21942 -6.31904 0.03668 0.17777 1.38831 1.40949 1.49326 1.58237 1.66052 2.12448 2.41125 2.80338 3.08846 3.29008 3.50735 3.64985 3.77270 3.97492 4.02464 4.10924 4.24965 4.52840 4.59851 4.65440 4.67543 4.75909 4.83544 4.91588 4.94194 5.23793 5.37058 5.65590 5.66647 5.81144 5.99632 6.09057 6.26993 6.72084 6.96378 7.14739 7.36413 8.84341 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029766 B = 0.005948 C = 0.005295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.436173 B = 4706.703244 C = 5286.986509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.038 3.962 3 H 0.056 0.944 4 C -0.534 4.534 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.904 5.904 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.553 6.553 14 N -0.561 5.561 15 C 0.055 3.945 16 C 0.048 3.952 17 O -0.305 6.305 18 C 0.123 3.877 19 C -0.171 4.171 20 C 0.098 3.902 21 N -0.509 5.509 22 C 0.069 3.931 23 C 0.016 3.984 24 H 0.079 0.921 25 H 0.020 0.980 26 H 0.046 0.954 27 H 0.268 0.732 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.070 0.930 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.201 0.799 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 6.232 14.700 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.017 3.983 3 H 0.073 0.927 4 C -0.572 4.572 5 H 0.063 0.937 6 C -0.172 4.172 7 N -0.543 5.543 8 Si 0.779 3.221 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.317 3.683 13 O -0.430 6.430 14 N -0.287 5.287 15 C -0.066 4.066 16 C -0.026 4.026 17 O -0.216 6.216 18 C 0.067 3.933 19 C -0.192 4.192 20 C -0.060 4.060 21 N -0.221 5.221 22 C -0.088 4.088 23 C -0.081 4.081 24 H 0.098 0.902 25 H 0.039 0.961 26 H 0.065 0.935 27 H 0.077 0.923 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.088 0.912 31 H 0.189 0.811 32 H 0.199 0.801 33 H 0.217 0.783 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.504 5.038 14.577 15.625 hybrid contribution 0.039 0.205 -1.445 1.459 sum 2.542 5.243 13.133 14.367 Atomic orbital electron populations 1.21554 0.94675 1.00224 1.01078 1.18838 0.95254 0.96302 0.87942 0.92667 1.21153 1.32417 1.12713 0.90947 0.93747 1.25487 0.94938 0.95633 1.01120 1.69912 1.36527 1.23212 1.24635 0.85625 0.78541 0.78701 0.79229 1.19753 1.20731 1.19851 1.22170 0.75009 0.86944 0.84154 1.90331 1.50187 1.18153 1.84360 1.46157 1.59605 1.14601 1.08311 1.23101 0.99465 0.79048 1.05027 1.23696 0.98848 0.98577 0.81528 1.85944 1.87291 1.15774 1.32626 1.19070 0.96415 0.83460 0.94345 1.21870 1.02452 0.95919 0.98940 1.23326 0.95513 0.90565 0.96600 1.67900 1.12306 1.41047 1.00856 1.23617 0.96521 0.91439 0.97235 1.19420 1.04129 0.94413 0.90167 0.90181 0.96075 0.93530 0.92296 0.85885 0.88025 0.91186 0.81093 0.80083 0.78272 0.81536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.82 71.98 0.64 -4.59 16 2 C 0.04 1.80 1.83 -12.28 -0.02 1.77 16 3 H 0.06 2.56 6.35 -2.39 -0.02 2.55 16 4 C -0.53 -29.75 8.33 25.60 0.21 -29.53 16 5 H 0.04 2.67 7.03 -2.91 -0.02 2.65 16 6 C 0.03 1.53 5.30 84.65 0.45 1.98 16 7 N -0.90 -47.99 11.39 21.45 0.24 -47.74 16 8 Si 0.95 43.48 29.54 68.60 2.03 45.50 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 C 0.52 24.06 6.76 87.66 0.59 24.65 16 13 O -0.55 -29.04 12.60 -3.06 -0.04 -29.08 16 14 N -0.56 -20.79 3.01 -627.67 -1.89 -22.68 16 15 C 0.05 1.45 5.97 86.39 0.52 1.96 16 16 C 0.05 0.99 7.18 72.16 0.52 1.51 16 17 O -0.30 -7.44 10.35 -87.17 -0.90 -8.34 16 18 C 0.12 3.56 6.55 22.79 0.15 3.71 16 19 C -0.17 -3.95 10.08 22.43 0.23 -3.72 16 20 C 0.10 2.43 11.16 84.66 0.95 3.38 16 21 N -0.51 -17.60 10.36 -195.68 -2.03 -19.62 16 22 C 0.07 2.73 10.22 84.64 0.87 3.59 16 23 C 0.02 0.58 6.34 38.09 0.24 0.82 16 24 H 0.08 3.81 6.26 -2.39 -0.01 3.79 16 25 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.70 7.62 -2.39 -0.02 1.68 16 27 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 28 H 0.12 3.26 5.71 -2.39 -0.01 3.25 16 29 H 0.10 2.35 8.14 -2.38 -0.02 2.33 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.20 3.10 8.06 -2.91 -0.02 3.07 16 34 H 0.17 7.72 4.99 -11.01 -0.05 7.67 16 Total: -1.00 -68.59 282.05 3.83 -64.76 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.09 Total: 11.67 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 5.33 Total: 5.53 kcal Atomic # 7 Polarization: -86.37 SS G_CDS: -3.67 Total: -90.05 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.94 Total: -37.42 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.59 3.83 -64.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597356103.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.899 kcal (2) G-P(sol) polarization free energy of solvation -68.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds