Wall clock time and date at job start Mon Mar 30 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.74867 * 2 1 4 4 C 1.53808 * 109.75956 * 239.36899 * 2 1 3 5 5 N 1.46963 * 108.58351 * 289.94892 * 4 2 1 6 6 S 1.65594 * 120.59718 * 124.62322 * 5 4 2 7 7 C 1.81402 * 104.45185 * 270.02769 * 6 5 4 8 8 O 1.42099 * 104.27874 * 26.09666 * 6 5 4 9 9 O 1.42099 * 104.28077 * 153.95805 * 6 5 4 10 10 C 1.46971 * 118.80864 * 304.65065 * 5 4 2 11 11 C 1.53366 * 108.63555 * 55.22461 * 10 5 4 12 12 H 1.08999 * 109.61417 * 70.31994 * 11 10 5 13 13 C 1.53001 * 109.75061 * 190.74606 * 11 10 5 14 14 N 1.46963 * 108.63447 * 310.57161 * 11 10 5 15 15 C 1.36942 * 120.59719 * 235.20550 * 14 11 10 16 16 H 1.08002 * 119.99792 * 29.17724 * 15 14 11 17 17 C 1.38807 * 120.00148 * 209.17479 * 15 14 11 18 18 N 1.31620 * 119.99926 * 16.98849 * 17 15 14 19 19 Si 1.86792 * 120.00022 * 196.99009 * 17 15 14 20 20 H 1.48498 * 109.47391 * 179.97438 * 19 17 15 21 21 H 1.48504 * 109.47451 * 299.99895 * 19 17 15 22 22 H 1.48506 * 109.47272 * 60.00082 * 19 17 15 23 23 H 1.08998 * 109.47381 * 299.57952 * 1 2 3 24 24 H 1.09002 * 109.46767 * 59.57532 * 1 2 3 25 25 H 1.08996 * 109.47494 * 179.57139 * 1 2 3 26 26 H 1.08999 * 109.74282 * 170.15950 * 4 2 1 27 27 H 1.08995 * 109.53704 * 49.61638 * 4 2 1 28 28 H 1.09000 * 109.47311 * 59.99319 * 7 6 5 29 29 H 1.08994 * 109.47760 * 180.02562 * 7 6 5 30 30 H 1.09000 * 109.46955 * 300.00062 * 7 6 5 31 31 H 1.08994 * 109.60907 * 295.47586 * 10 5 4 32 32 H 1.09007 * 109.60693 * 174.96408 * 10 5 4 33 33 H 1.08999 * 109.47298 * 179.22813 * 13 11 10 34 34 H 1.08997 * 109.47158 * 299.23371 * 13 11 10 35 35 H 1.09009 * 109.47005 * 59.22825 * 13 11 10 36 36 H 0.97004 * 119.99535 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0499 -0.7375 -1.2455 5 7 1.7610 -2.1707 -1.0959 6 16 0.9000 -2.9824 -2.2544 7 6 -0.8295 -2.8148 -1.7335 8 8 1.1353 -2.2456 -3.4464 9 8 1.3298 -4.3311 -2.1298 10 6 2.2494 -2.8705 0.1007 11 6 1.7341 -2.1342 1.3435 12 1 0.6584 -2.2827 1.4369 13 6 2.4369 -2.6721 2.5915 14 7 2.0232 -0.7011 1.1938 15 6 2.7344 -0.0296 2.1523 16 1 3.4670 -0.5542 2.7476 17 6 2.5137 1.3252 2.3586 18 7 1.4205 1.8921 1.8938 19 14 3.7681 2.3437 3.2957 20 1 3.3010 3.7509 3.3783 21 1 3.9283 1.7937 4.6658 22 1 5.0726 2.2965 2.5876 23 1 -0.3634 0.5073 0.8937 24 1 -0.3633 0.5204 -0.8862 25 1 -0.3634 -1.0276 -0.0077 26 1 3.1257 -0.5891 -1.3390 27 1 1.5468 -0.3537 -2.1330 28 1 -1.0963 -1.7587 -1.6934 29 1 -1.4752 -3.3262 -2.4473 30 1 -0.9563 -3.2592 -0.7463 31 1 3.3393 -2.8739 0.1031 32 1 1.8778 -3.8952 0.1023 33 1 2.0775 -2.1366 3.4702 34 1 2.2212 -3.7350 2.7004 35 1 3.5130 -2.5281 2.4931 36 1 1.2665 2.8390 2.0377 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601490141.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:05:38 Heat of formation + Delta-G solvation = -59.556091 kcal Electronic energy + Delta-G solvation = -19771.513941 eV Core-core repulsion = 16804.180191 eV Total energy + Delta-G solvation = -2967.333750 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.77261 -38.19758 -36.99395 -35.57907 -34.25097 -32.80096 -30.41241 -29.47584 -27.78674 -26.45312 -24.90113 -22.51186 -20.78022 -19.81331 -18.77182 -17.72832 -17.23335 -17.03235 -16.83489 -15.72698 -15.66578 -15.50332 -14.93927 -14.75347 -14.12102 -13.99581 -13.58243 -13.52166 -13.33331 -13.17488 -13.01990 -12.91558 -12.72852 -12.69533 -12.39227 -12.21583 -12.19252 -12.03913 -11.86803 -11.64314 -11.41439 -11.05711 -10.39144 -9.92606 -8.43565 -7.74290 -5.17851 -0.64184 1.50436 1.53882 1.57819 1.68935 2.58084 2.95967 3.19725 3.39168 3.62632 3.82659 4.13453 4.15387 4.28132 4.49217 4.56255 4.61488 4.70582 4.79330 4.88808 4.96000 5.00389 5.05378 5.14897 5.25256 5.30376 5.47213 5.57324 5.63301 5.79857 5.92064 6.04000 6.53212 7.29362 8.00052 8.51231 9.29126 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.033065 B = 0.007307 C = 0.006736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.616642 B = 3831.171781 C = 4155.585430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.173 3.827 3 H 0.069 0.931 4 C 0.114 3.886 5 N -0.993 5.993 6 S 2.613 3.387 7 C -0.658 4.658 8 O -0.993 6.993 9 O -0.989 6.989 10 C 0.115 3.885 11 C 0.146 3.854 12 H 0.034 0.966 13 C -0.131 4.131 14 N -0.594 5.594 15 C -0.248 4.248 16 H 0.069 0.931 17 C -0.044 4.044 18 N -0.919 5.919 19 Si 0.951 3.049 20 H -0.300 1.300 21 H -0.282 1.282 22 H -0.287 1.287 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.137 0.863 29 H 0.153 0.847 30 H 0.144 0.856 31 H 0.061 0.939 32 H 0.103 0.897 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.160 -9.013 -4.863 11.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.065 3.935 3 H 0.087 0.913 4 C -0.013 4.013 5 N -0.830 5.830 6 S 2.711 3.289 7 C -0.811 4.811 8 O -0.984 6.984 9 O -0.980 6.980 10 C -0.012 4.012 11 C 0.039 3.961 12 H 0.051 0.949 13 C -0.189 4.189 14 N -0.317 5.317 15 C -0.378 4.378 16 H 0.087 0.913 17 C -0.240 4.240 18 N -0.566 5.566 19 Si 0.782 3.218 20 H -0.227 1.227 21 H -0.208 1.208 22 H -0.214 1.214 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.155 0.845 29 H 0.171 0.829 30 H 0.162 0.838 31 H 0.079 0.921 32 H 0.121 0.879 33 H 0.063 0.937 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.803 -9.308 -5.598 11.508 hybrid contribution 0.181 1.353 1.087 1.745 sum -3.621 -7.954 -4.511 9.835 Atomic orbital electron populations 1.22052 0.97495 0.99866 1.00750 1.20763 0.92891 0.95639 0.84189 0.91287 1.22054 1.00561 0.79378 0.99301 1.57353 1.69647 1.19109 1.36862 1.04551 0.78472 0.72701 0.73180 1.30496 1.23108 1.13132 1.14397 1.93533 1.85492 1.73120 1.46276 1.93532 1.81165 1.36622 1.86646 1.21984 0.99620 0.95305 0.84261 1.21031 0.96763 0.84725 0.93569 0.94859 1.21715 1.00181 1.00162 0.96854 1.44284 1.63205 1.04490 1.19749 1.19366 1.13164 0.92038 1.13256 0.91295 1.25574 0.97805 0.99591 1.01069 1.70116 1.24774 1.10698 1.50962 0.85594 0.79558 0.77781 0.78876 1.22666 1.20791 1.21361 0.93789 0.93323 0.93049 0.92870 0.89061 0.84491 0.82896 0.83778 0.92096 0.87920 0.93730 0.90450 0.93254 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.44 8.56 71.98 0.62 -4.82 16 2 C 0.17 7.31 2.36 45.17 0.11 7.41 16 3 H 0.07 3.45 6.03 -2.39 -0.01 3.43 16 4 C 0.11 4.07 5.89 86.56 0.51 4.58 16 5 N -0.99 -31.26 2.84 -511.44 -1.45 -32.71 16 6 S 2.61 71.54 6.06 -56.49 -0.34 71.20 16 7 C -0.66 -12.13 9.98 113.37 1.13 -11.00 16 8 O -0.99 -33.15 16.70 -127.65 -2.13 -35.28 16 9 O -0.99 -31.28 16.70 -127.65 -2.13 -33.41 16 10 C 0.12 3.60 5.81 86.41 0.50 4.11 16 11 C 0.15 5.25 3.22 45.03 0.14 5.39 16 12 H 0.03 1.18 7.38 -2.39 -0.02 1.16 16 13 C -0.13 -4.30 7.95 71.98 0.57 -3.72 16 14 N -0.59 -26.38 2.68 -649.90 -1.74 -28.12 16 15 C -0.25 -12.40 8.57 84.03 0.72 -11.68 16 16 H 0.07 3.39 6.23 -2.91 -0.02 3.38 16 17 C -0.04 -2.32 4.91 84.86 0.42 -1.90 16 18 N -0.92 -49.85 10.15 21.65 0.22 -49.63 16 19 Si 0.95 43.29 29.59 68.60 2.03 45.32 16 20 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 23 H 0.04 2.00 7.18 -2.39 -0.02 1.98 16 24 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.64 4.87 -2.39 -0.01 1.63 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.09 2.96 7.04 -2.39 -0.02 2.94 16 28 H 0.14 2.56 6.76 -2.39 -0.02 2.54 16 29 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.06 1.99 8.12 -2.39 -0.02 1.98 16 32 H 0.10 2.69 7.06 -2.38 -0.02 2.67 16 33 H 0.04 1.63 7.68 -2.39 -0.02 1.61 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 1.67 7.37 -2.38 -0.02 1.65 16 36 H 0.24 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -64.71 288.02 0.24 -64.48 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.07 Total: 9.80 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 4.72 Total: -11.64 kcal Atomic # 7 Polarization: -107.48 SS G_CDS: -2.98 Total: -110.46 kcal Atomic # 8 Polarization: -64.43 SS G_CDS: -4.26 Total: -68.69 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 71.54 SS G_CDS: -0.34 Total: 71.20 kcal Total: -64.71 0.24 -64.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601490141.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.921 kcal (2) G-P(sol) polarization free energy of solvation -64.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds