Wall clock time and date at job start Mon Mar 30 2020 04:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47567 * 2 1 4 4 H 1.08999 * 109.47281 * 55.80279 * 3 2 1 5 5 C 1.50698 * 109.47221 * 175.80760 * 3 2 1 6 6 H 1.08002 * 120.00077 * 119.99840 * 5 3 2 7 7 C 1.37878 * 119.99805 * 299.72018 * 5 3 2 8 8 N 1.31508 * 119.99980 * 0.27487 * 7 5 3 9 9 Si 1.86799 * 120.00022 * 180.27810 * 7 5 3 10 10 H 1.48504 * 109.47235 * 59.99752 * 9 7 5 11 11 H 1.48494 * 109.47276 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47095 * 299.99926 * 9 7 5 13 13 N 1.46505 * 109.46728 * 295.80459 * 3 2 1 14 14 S 1.65599 * 120.00139 * 125.21774 * 13 3 2 15 15 O 1.42095 * 106.40427 * 177.39486 * 14 13 3 16 16 O 1.42104 * 106.40249 * 310.31721 * 14 13 3 17 17 N 1.65606 * 107.21653 * 63.85549 * 14 13 3 18 18 C 1.46504 * 119.99740 * 90.00177 * 17 14 13 19 19 C 1.46498 * 119.99971 * 269.99853 * 17 14 13 20 20 C 1.53003 * 117.49677 * 188.62271 * 19 17 14 21 21 C 1.53001 * 117.49476 * 120.00236 * 19 17 14 22 22 H 1.08996 * 109.47757 * 177.45891 * 1 2 3 23 23 H 1.09010 * 109.47393 * 297.46318 * 1 2 3 24 24 H 1.09007 * 109.47084 * 57.45565 * 1 2 3 25 25 H 1.08993 * 109.47262 * 239.99071 * 2 1 3 26 26 H 1.09002 * 109.46636 * 119.99669 * 2 1 3 27 27 H 0.97001 * 120.00113 * 180.02562 * 8 7 5 28 28 H 0.97006 * 119.99992 * 305.21583 * 13 3 2 29 29 H 1.09005 * 109.47051 * 89.99794 * 18 17 14 30 30 H 1.08996 * 109.46850 * 210.00070 * 18 17 14 31 31 H 1.09003 * 109.46909 * 329.99758 * 18 17 14 32 32 H 1.09002 * 115.55142 * 334.33374 * 19 17 14 33 33 H 1.08997 * 117.49663 * 0.02562 * 20 19 17 34 34 H 1.09000 * 117.49544 * 145.02435 * 20 19 17 35 35 H 1.08999 * 117.49759 * 214.97696 * 21 19 17 36 36 H 1.08996 * 117.50310 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6167 1.9776 0.8500 5 6 3.5435 1.4436 0.1039 6 1 4.1384 1.8918 -0.6782 7 6 4.1592 0.8776 1.2000 8 7 3.4347 0.3319 2.1523 9 14 6.0224 0.8859 1.3326 10 1 6.5127 2.2877 1.3297 11 1 6.4318 0.2215 2.5959 12 1 6.6041 0.1558 0.1777 13 7 1.6360 2.1032 -1.2436 14 16 0.7862 3.5235 -1.1883 15 8 0.6032 3.9344 -2.5361 16 8 -0.2919 3.3112 -0.2872 17 7 1.7686 4.6553 -0.4837 18 6 2.6575 5.4722 -1.3137 19 6 1.7487 4.8397 0.9695 20 6 2.5221 6.0296 1.5413 21 6 3.0567 4.6084 1.7288 22 1 -0.3634 -1.0266 -0.0456 23 1 -0.3634 0.4740 0.9119 24 1 -0.3634 0.5529 -0.8664 25 1 1.8933 -0.5139 -0.8898 26 1 1.8932 -0.5138 0.8901 27 1 3.8678 -0.0659 2.9237 28 1 1.8662 1.7088 -2.0994 29 1 2.1369 6.3800 -1.6191 30 1 3.5462 5.7381 -0.7414 31 1 2.9505 4.9064 -2.1980 32 1 0.8212 4.5560 1.4668 33 1 3.0452 6.6755 0.8362 34 1 2.1032 6.5291 2.4149 35 1 2.9897 4.1729 2.7258 36 1 3.9319 4.3187 1.1473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613013311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:12 Heat of formation + Delta-G solvation = -55.284716 kcal Electronic energy + Delta-G solvation = -19581.770033 eV Core-core repulsion = 16614.621504 eV Total energy + Delta-G solvation = -2967.148529 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -37.75844 -36.69561 -35.81412 -35.23044 -32.77156 -32.19169 -30.49088 -26.64327 -26.34056 -22.99684 -21.89061 -21.13779 -20.07329 -18.71433 -17.67838 -16.90775 -16.40417 -15.84978 -14.98535 -14.65709 -14.25179 -13.67729 -13.53877 -13.09727 -12.89700 -12.35535 -12.12444 -11.76582 -11.66938 -11.57849 -11.45058 -11.26507 -11.19324 -10.97220 -10.91152 -10.83270 -10.71865 -10.32958 -9.97657 -9.90269 -9.70737 -9.52660 -8.48960 -8.35917 -8.16406 -6.11029 -4.18914 1.28101 3.22599 3.29171 3.30564 3.47515 4.18594 4.28198 4.35418 4.87928 5.15079 5.18526 5.32958 5.41859 5.44507 5.72958 5.85792 5.91930 6.03029 6.24910 6.33713 6.39954 6.49801 6.53297 6.66034 6.72836 6.92828 6.99790 7.10808 7.26667 7.62846 7.67962 7.92168 8.05970 8.28557 8.83574 9.46903 10.93114 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.010576 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.877271 B = 2646.748896 C = 3478.150240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C 0.282 3.718 4 H 0.049 0.951 5 C -0.522 4.522 6 H 0.059 0.941 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.279 1.279 13 N -1.111 6.111 14 S 2.790 3.210 15 O -1.004 7.004 16 O -0.984 6.984 17 N -0.977 5.977 18 C 0.099 3.901 19 C 0.085 3.915 20 C -0.194 4.194 21 C -0.168 4.168 22 H 0.032 0.968 23 H 0.048 0.952 24 H 0.035 0.965 25 H 0.036 0.964 26 H 0.102 0.898 27 H 0.263 0.737 28 H 0.403 0.597 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.135 0.865 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.615 7.149 -2.099 7.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.167 4.167 3 C 0.178 3.822 4 H 0.066 0.934 5 C -0.562 4.562 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.873 5.873 14 S 2.798 3.202 15 O -0.988 6.988 16 O -0.967 6.967 17 N -0.814 5.814 18 C -0.047 4.047 19 C -0.022 4.022 20 C -0.233 4.233 21 C -0.207 4.207 22 H 0.051 0.949 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.235 0.765 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.153 0.847 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.118 0.882 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.559 7.292 -2.065 7.737 hybrid contribution 1.700 -0.301 -0.100 1.730 sum 0.141 6.991 -2.165 7.320 Atomic orbital electron populations 1.21807 0.98780 0.98986 1.00791 1.21887 0.92222 0.99757 1.02789 1.18506 0.94306 0.89975 0.79388 0.93350 1.21373 0.91169 1.37948 1.05673 0.92281 1.24855 0.97901 0.95056 0.95590 1.69846 1.35033 1.37989 1.09493 0.86690 0.85866 0.78256 0.77318 1.20270 1.21329 1.20418 1.55881 1.75423 1.39988 1.15959 1.01579 0.73703 0.72711 0.72181 1.93538 1.86171 1.82655 1.36473 1.93566 1.51349 1.85416 1.66391 1.57303 1.58320 1.52768 1.12974 1.21327 0.94109 0.95089 0.94155 1.21400 0.97622 1.03460 0.79686 1.23331 1.04889 0.92177 1.02941 1.23295 0.98883 0.96173 1.02332 0.94861 0.93256 0.94561 0.94473 0.87949 0.92641 0.76473 0.93096 0.91151 0.91317 0.84724 0.88764 0.88701 0.88217 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.82 37.16 0.37 -2.64 16 2 C -0.13 -2.86 5.45 -26.73 -0.15 -3.00 16 3 C 0.28 6.44 2.33 -69.08 -0.16 6.28 16 4 H 0.05 1.20 7.48 -51.93 -0.39 0.82 16 5 C -0.52 -12.64 8.84 -34.44 -0.30 -12.95 16 6 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -22.92 11.30 55.43 0.63 -22.30 16 9 Si 0.89 19.66 29.54 -169.99 -5.02 14.64 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -1.11 -22.14 4.80 -5.88 -0.03 -22.17 16 14 S 2.79 54.38 5.98 -107.50 -0.64 53.73 16 15 O -1.00 -20.68 17.21 -57.17 -0.98 -21.66 16 16 O -0.98 -21.45 16.47 -57.17 -0.94 -22.39 16 17 N -0.98 -16.79 3.58 -114.60 -0.41 -17.20 16 18 C 0.10 1.42 9.53 59.85 0.57 1.99 16 19 C 0.09 1.42 6.26 -67.93 -0.43 1.00 16 20 C -0.19 -2.62 9.72 -26.73 -0.26 -2.88 16 21 C -0.17 -2.77 10.13 -26.73 -0.27 -3.04 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 24 H 0.04 0.72 7.66 -51.92 -0.40 0.32 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.10 2.55 5.98 -51.93 -0.31 2.24 16 27 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.40 7.34 8.96 -34.47 -0.31 7.03 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.90 6.33 -51.93 -0.33 0.57 16 31 H 0.07 0.97 7.79 -51.93 -0.40 0.57 16 32 H 0.14 2.31 7.37 -51.93 -0.38 1.93 16 33 H 0.09 1.15 6.46 -51.93 -0.34 0.82 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 36 H 0.10 1.89 8.12 -51.93 -0.42 1.47 16 LS Contribution 308.70 15.07 4.65 4.65 Total: -1.00 -28.53 308.70 -8.83 -37.37 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.36 Total: 8.96 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.73 Total: -13.63 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.19 Total: -61.67 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -1.93 Total: -44.05 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 54.38 SS G_CDS: -0.64 Total: 53.73 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -28.53 -8.83 -37.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613013311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.917 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds