Wall clock time and date at job start Mon Mar 30 2020 04:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47567 * 2 1 4 4 H 1.08999 * 109.47281 * 55.80279 * 3 2 1 5 5 C 1.50698 * 109.47221 * 175.80760 * 3 2 1 6 6 H 1.08002 * 120.00077 * 119.99840 * 5 3 2 7 7 C 1.37878 * 119.99805 * 299.72018 * 5 3 2 8 8 N 1.31508 * 119.99980 * 0.27487 * 7 5 3 9 9 Si 1.86799 * 120.00022 * 180.27810 * 7 5 3 10 10 H 1.48504 * 109.47235 * 59.99752 * 9 7 5 11 11 H 1.48494 * 109.47276 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47095 * 299.99926 * 9 7 5 13 13 N 1.46505 * 109.46728 * 295.80459 * 3 2 1 14 14 S 1.65599 * 120.00139 * 125.21774 * 13 3 2 15 15 O 1.42095 * 106.40427 * 177.39486 * 14 13 3 16 16 O 1.42104 * 106.40249 * 310.31721 * 14 13 3 17 17 N 1.65606 * 107.21653 * 63.85549 * 14 13 3 18 18 C 1.46504 * 119.99740 * 90.00177 * 17 14 13 19 19 C 1.46498 * 119.99971 * 269.99853 * 17 14 13 20 20 C 1.53003 * 117.49677 * 188.62271 * 19 17 14 21 21 C 1.53001 * 117.49476 * 120.00236 * 19 17 14 22 22 H 1.08996 * 109.47757 * 177.45891 * 1 2 3 23 23 H 1.09010 * 109.47393 * 297.46318 * 1 2 3 24 24 H 1.09007 * 109.47084 * 57.45565 * 1 2 3 25 25 H 1.08993 * 109.47262 * 239.99071 * 2 1 3 26 26 H 1.09002 * 109.46636 * 119.99669 * 2 1 3 27 27 H 0.97001 * 120.00113 * 180.02562 * 8 7 5 28 28 H 0.97006 * 119.99992 * 305.21583 * 13 3 2 29 29 H 1.09005 * 109.47051 * 89.99794 * 18 17 14 30 30 H 1.08996 * 109.46850 * 210.00070 * 18 17 14 31 31 H 1.09003 * 109.46909 * 329.99758 * 18 17 14 32 32 H 1.09002 * 115.55142 * 334.33374 * 19 17 14 33 33 H 1.08997 * 117.49663 * 0.02562 * 20 19 17 34 34 H 1.09000 * 117.49544 * 145.02435 * 20 19 17 35 35 H 1.08999 * 117.49759 * 214.97696 * 21 19 17 36 36 H 1.08996 * 117.50310 * 359.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6167 1.9776 0.8500 5 6 3.5435 1.4436 0.1039 6 1 4.1384 1.8918 -0.6782 7 6 4.1592 0.8776 1.2000 8 7 3.4347 0.3319 2.1523 9 14 6.0224 0.8859 1.3326 10 1 6.5127 2.2877 1.3297 11 1 6.4318 0.2215 2.5959 12 1 6.6041 0.1558 0.1777 13 7 1.6360 2.1032 -1.2436 14 16 0.7862 3.5235 -1.1883 15 8 0.6032 3.9344 -2.5361 16 8 -0.2919 3.3112 -0.2872 17 7 1.7686 4.6553 -0.4837 18 6 2.6575 5.4722 -1.3137 19 6 1.7487 4.8397 0.9695 20 6 2.5221 6.0296 1.5413 21 6 3.0567 4.6084 1.7288 22 1 -0.3634 -1.0266 -0.0456 23 1 -0.3634 0.4740 0.9119 24 1 -0.3634 0.5529 -0.8664 25 1 1.8933 -0.5139 -0.8898 26 1 1.8932 -0.5138 0.8901 27 1 3.8678 -0.0659 2.9237 28 1 1.8662 1.7088 -2.0994 29 1 2.1369 6.3800 -1.6191 30 1 3.5462 5.7381 -0.7414 31 1 2.9505 4.9064 -2.1980 32 1 0.8212 4.5560 1.4668 33 1 3.0452 6.6755 0.8362 34 1 2.1032 6.5291 2.4149 35 1 2.9897 4.1729 2.7258 36 1 3.9319 4.3187 1.1473 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613013311.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:16:12 Heat of formation + Delta-G solvation = -74.810875 kcal Electronic energy + Delta-G solvation = -19582.616751 eV Core-core repulsion = 16614.621504 eV Total energy + Delta-G solvation = -2967.995247 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.03630 -38.32314 -37.57367 -36.87226 -34.06562 -34.04502 -32.20315 -28.47983 -27.56480 -24.81978 -23.12341 -22.45992 -21.85546 -20.22974 -19.16220 -18.57838 -18.13343 -17.34708 -16.69951 -16.11318 -15.76398 -15.27514 -14.96426 -14.79632 -14.49221 -13.70924 -13.49593 -13.41406 -13.34993 -13.19713 -13.12114 -12.99108 -12.71449 -12.59180 -12.58563 -12.18262 -12.07701 -11.95101 -11.70331 -11.53478 -11.36771 -11.17800 -10.40122 -9.96646 -9.60130 -8.01855 -6.14619 -0.25632 1.47167 1.49962 1.54863 1.99432 2.49353 2.67148 3.03445 3.26333 3.42010 3.90116 4.04892 4.15556 4.21400 4.51729 4.59305 4.65275 4.69310 4.73891 4.82785 4.92579 4.95093 5.12903 5.21481 5.33737 5.36982 5.41125 5.48013 5.69738 5.73798 5.85017 6.10563 6.27897 6.50760 6.92657 7.53775 9.01271 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.017674 B = 0.010576 C = 0.008048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.877271 B = 2646.748896 C = 3478.150240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.291 3.709 4 H 0.025 0.975 5 C -0.524 4.524 6 H 0.059 0.941 7 C 0.031 3.969 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.278 1.278 13 N -1.111 6.111 14 S 2.802 3.198 15 O -1.013 7.013 16 O -1.010 7.010 17 N -0.976 5.976 18 C 0.088 3.912 19 C 0.061 3.939 20 C -0.152 4.152 21 C -0.183 4.183 22 H 0.055 0.945 23 H 0.035 0.965 24 H 0.040 0.960 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.262 0.738 28 H 0.411 0.589 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.115 0.885 34 H 0.119 0.881 35 H 0.088 0.912 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 8.451 -2.611 8.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.166 4.166 3 C 0.186 3.814 4 H 0.043 0.957 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.170 4.170 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.872 5.872 14 S 2.811 3.189 15 O -0.998 6.998 16 O -0.994 6.994 17 N -0.814 5.814 18 C -0.057 4.057 19 C -0.046 4.046 20 C -0.191 4.191 21 C -0.222 4.222 22 H 0.074 0.926 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.097 0.903 27 H 0.071 0.929 28 H 0.244 0.756 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.107 0.893 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.801 8.597 -2.605 9.019 hybrid contribution 1.458 -0.673 0.050 1.607 sum 0.657 7.924 -2.555 8.352 Atomic orbital electron populations 1.21726 0.97292 1.00410 1.00275 1.21803 0.93589 0.99395 1.01826 1.18210 0.93572 0.89957 0.79678 0.95701 1.21552 0.91904 1.37378 1.05476 0.92274 1.25428 1.01131 0.94957 0.95446 1.69966 1.36268 1.38800 1.09880 0.85857 0.81913 0.78394 0.76852 1.19466 1.21720 1.20405 1.55737 1.75353 1.40603 1.15471 1.01056 0.73511 0.72656 0.71649 1.93520 1.86459 1.82737 1.37056 1.93527 1.53015 1.85859 1.66955 1.57100 1.58545 1.52308 1.13479 1.21622 0.94587 0.95431 0.94047 1.21491 0.97253 1.06555 0.79309 1.23453 1.01823 0.90606 1.03222 1.23168 0.98167 0.99361 1.01529 0.92564 0.94577 0.94118 0.93935 0.90310 0.92902 0.75565 0.91020 0.89421 0.91323 0.85975 0.86676 0.86294 0.89319 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.69 9.82 71.98 0.71 -4.99 16 2 C -0.13 -5.71 5.45 30.59 0.17 -5.55 16 3 C 0.29 13.35 2.33 44.24 0.10 13.45 16 4 H 0.03 1.28 7.48 -2.39 -0.02 1.26 16 5 C -0.52 -25.27 8.84 25.60 0.23 -25.04 16 6 H 0.06 2.81 7.81 -2.91 -0.02 2.78 16 7 C 0.03 1.52 5.30 84.66 0.45 1.97 16 8 N -0.91 -47.69 11.30 21.45 0.24 -47.45 16 9 Si 0.94 40.00 29.54 68.60 2.03 42.03 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 12 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 13 N -1.11 -43.90 4.80 -172.52 -0.83 -44.72 16 14 S 2.80 107.81 5.98 -56.49 -0.34 107.47 16 15 O -1.01 -40.61 17.21 -128.00 -2.20 -42.81 16 16 O -1.01 -44.22 16.47 -128.00 -2.11 -46.33 16 17 N -0.98 -32.33 3.58 -516.50 -1.85 -34.18 16 18 C 0.09 2.31 9.53 127.77 1.22 3.52 16 19 C 0.06 1.97 6.26 44.99 0.28 2.25 16 20 C -0.15 -3.67 9.72 30.60 0.30 -3.37 16 21 C -0.18 -5.90 10.13 30.60 0.31 -5.59 16 22 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 23 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 24 H 0.04 1.59 7.66 -2.38 -0.02 1.57 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.08 3.98 5.98 -2.39 -0.01 3.97 16 27 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 28 H 0.41 14.68 8.96 -96.74 -0.87 13.82 16 29 H 0.07 1.59 8.14 -2.38 -0.02 1.58 16 30 H 0.09 1.99 6.33 -2.39 -0.02 1.97 16 31 H 0.07 1.80 7.79 -2.39 -0.02 1.78 16 32 H 0.12 4.23 7.37 -2.39 -0.02 4.21 16 33 H 0.12 2.33 6.46 -2.39 -0.02 2.31 16 34 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 36 H 0.09 3.15 8.12 -2.39 -0.02 3.13 16 Total: -1.00 -59.84 308.70 -1.09 -60.93 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.21 Total: 28.39 kcal Atomic # 6 Polarization: -27.09 SS G_CDS: 3.76 Total: -23.33 kcal Atomic # 7 Polarization: -123.92 SS G_CDS: -2.43 Total: -126.35 kcal Atomic # 8 Polarization: -84.83 SS G_CDS: -4.31 Total: -89.14 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.03 kcal Atomic # 16 Polarization: 107.81 SS G_CDS: -0.34 Total: 107.47 kcal Total: -59.84 -1.09 -60.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613013311.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.878 kcal (2) G-P(sol) polarization free energy of solvation -59.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds