Wall clock time and date at job start Mon Mar 30 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34885 * 125.65067 * 2 1 4 4 C 1.35873 * 109.08596 * 179.97438 * 3 2 1 5 5 C 1.39385 * 107.91798 * 0.02562 * 4 3 2 6 6 C 1.37848 * 125.64966 * 179.70051 * 2 1 3 7 7 C 1.41534 * 126.31541 * 359.97438 * 6 2 1 8 8 O 1.21603 * 119.99656 * 0.02562 * 7 6 2 9 9 C 1.49088 * 120.00154 * 179.97438 * 7 6 2 10 10 O 1.21401 * 119.99949 * 0.02562 * 9 7 6 11 11 N 1.34777 * 120.00124 * 180.02562 * 9 7 6 12 12 C 1.47065 * 136.05584 * 359.63400 * 11 9 7 13 13 C 1.53760 * 87.88767 * 152.96280 * 12 11 9 14 14 C 1.50694 * 114.26756 * 139.79429 * 13 12 11 15 15 H 1.08000 * 120.00031 * 266.47372 * 14 13 12 16 16 C 1.37875 * 120.00102 * 86.47712 * 14 13 12 17 17 N 1.31516 * 119.99928 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 120.00110 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47000 * 90.00385 * 18 16 14 20 20 H 1.48499 * 109.47055 * 210.00574 * 18 16 14 21 21 H 1.48496 * 109.46974 * 330.00490 * 18 16 14 22 22 C 1.47062 * 136.05597 * 180.02562 * 11 9 7 23 23 H 1.09002 * 109.47391 * 90.01921 * 1 2 3 24 24 H 1.09001 * 109.46813 * 330.01977 * 1 2 3 25 25 H 1.09004 * 109.47041 * 210.02104 * 1 2 3 26 26 H 1.08001 * 125.45621 * 359.94856 * 3 2 1 27 27 H 1.07994 * 126.04142 * 180.02562 * 4 3 2 28 28 H 1.07999 * 126.53617 * 180.02562 * 5 4 3 29 29 H 1.08996 * 113.46998 * 267.69468 * 12 11 9 30 30 H 1.09004 * 113.46416 * 38.13581 * 12 11 9 31 31 H 1.09004 * 114.39357 * 272.67855 * 13 12 11 32 32 H 0.97001 * 119.99985 * 179.97438 * 17 16 14 33 33 H 1.09000 * 113.47462 * 321.86627 * 22 11 9 34 34 H 1.08999 * 113.47040 * 92.25413 * 22 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2512 1.0961 0.0000 4 6 3.5535 0.7087 0.0006 5 6 3.5864 -0.6848 0.0004 6 6 2.2684 -1.1201 0.0059 7 6 1.8302 -2.4659 0.0134 8 8 0.6406 -2.7179 0.0147 9 6 2.8271 -3.5745 0.0185 10 8 4.0147 -3.3228 0.0167 11 7 2.4098 -4.8560 0.0252 12 6 1.1116 -5.5469 0.0358 13 6 1.8000 -6.7306 -0.6635 14 6 1.3623 -8.0839 -0.1655 15 1 1.9201 -8.5778 0.6163 16 6 0.2499 -8.6914 -0.7081 17 7 -0.1323 -9.8722 -0.2731 18 14 -0.7152 -7.8368 -2.0600 19 1 -0.1643 -8.2257 -3.3830 20 1 -2.1422 -8.2398 -1.9800 21 1 -0.6062 -6.3654 -1.8916 22 6 3.0524 -6.1788 0.0320 23 1 -0.3634 -0.0003 -1.0277 24 1 -0.3633 0.8902 0.5135 25 1 -0.3633 -0.8898 0.5142 26 1 1.9014 2.1179 -0.0008 27 1 4.4115 1.3645 0.0011 28 1 4.4691 -1.3070 0.0011 29 1 0.7538 -5.7832 1.0379 30 1 0.3550 -5.0584 -0.5782 31 1 1.8243 -6.6588 -1.7509 32 1 -0.9152 -10.2995 -0.6545 33 1 3.9495 -6.2289 -0.5851 34 1 3.2068 -6.5813 1.0332 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617895567.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:37 Heat of formation + Delta-G solvation = 33.349230 kcal Electronic energy + Delta-G solvation = -19256.922184 eV Core-core repulsion = 16158.173160 eV Total energy + Delta-G solvation = -3098.749024 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.64579 -39.91726 -38.29814 -37.28013 -33.05748 -32.66954 -30.03834 -29.84038 -26.68572 -26.18086 -25.14790 -24.19951 -21.34219 -20.47879 -19.47158 -18.45344 -17.25178 -17.22211 -16.54932 -15.93707 -15.77272 -15.07488 -14.69675 -14.33261 -13.82867 -13.73954 -13.46119 -13.16321 -12.97454 -12.60635 -12.45022 -12.31449 -12.18343 -11.84426 -11.66042 -11.09578 -10.80766 -10.68882 -10.09298 -9.74697 -9.37451 -8.99677 -8.85742 -8.64772 -8.37110 -8.18165 -6.22139 -4.25224 0.68655 2.22791 2.47558 2.81520 3.19369 3.22350 3.31703 3.34942 3.64057 4.31288 4.36806 4.61514 4.77823 4.99843 5.00686 5.06301 5.28745 5.32514 5.48084 5.69746 5.87354 5.95181 6.08854 6.14439 6.21090 6.31330 6.41493 6.48629 6.61691 6.85164 7.04487 7.11014 7.32062 7.52397 8.09996 8.31176 8.39662 8.80892 9.38900 10.89621 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.033137 B = 0.005033 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.772243 B = 5561.659097 C = 6177.055232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.411 5.411 3 C 0.033 3.967 4 C -0.226 4.226 5 C -0.079 4.079 6 C -0.099 4.099 7 C 0.415 3.585 8 O -0.448 6.448 9 C 0.509 3.491 10 O -0.533 6.533 11 N -0.615 5.615 12 C 0.088 3.912 13 C -0.008 4.008 14 C -0.514 4.514 15 H 0.081 0.919 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.872 3.128 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.259 1.259 22 C 0.114 3.886 23 H 0.078 0.922 24 H 0.084 0.916 25 H 0.102 0.898 26 H 0.170 0.830 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.267 0.733 33 H 0.067 0.933 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.758 20.062 0.064 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.083 5.083 3 C -0.106 4.106 4 C -0.250 4.250 5 C -0.105 4.105 6 C -0.208 4.208 7 C 0.293 3.707 8 O -0.324 6.324 9 C 0.295 3.705 10 O -0.412 6.412 11 N -0.349 5.349 12 C -0.034 4.034 13 C -0.028 4.028 14 C -0.551 4.551 15 H 0.099 0.901 16 C -0.125 4.125 17 N -0.527 5.527 18 Si 0.699 3.301 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.183 1.183 22 C -0.007 4.007 23 H 0.096 0.904 24 H 0.102 0.898 25 H 0.121 0.879 26 H 0.187 0.813 27 H 0.163 0.837 28 H 0.186 0.814 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.248 20.052 0.046 20.091 hybrid contribution -0.721 0.549 -0.644 1.112 sum 0.527 20.601 -0.598 20.617 Atomic orbital electron populations 1.22335 0.76130 1.05324 1.04098 1.43904 1.06847 1.05284 1.52297 1.22139 0.91077 0.91597 1.05759 1.21038 0.95892 0.95570 1.12523 1.22323 0.95777 0.94947 0.97423 1.19375 0.91308 0.87781 1.22291 1.20184 0.88842 0.88027 0.73601 1.90599 1.18558 1.86850 1.36424 1.19740 0.88768 0.82594 0.79436 1.90628 1.16799 1.82803 1.50966 1.49953 1.14222 1.03568 1.67159 1.24128 0.85791 0.91384 1.02104 1.20854 0.91658 0.94222 0.96048 1.20734 1.12470 0.99727 1.22190 0.90070 1.24986 0.96860 0.94363 0.96274 1.69888 1.25670 1.14839 1.42327 0.86929 0.79484 0.81052 0.82631 1.20083 1.21162 1.18287 1.23282 0.98565 0.77422 1.01443 0.90391 0.89755 0.87915 0.81304 0.83742 0.81364 0.89373 0.91239 0.91999 0.92310 0.91424 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.60 10.54 59.85 0.63 1.23 16 2 N -0.41 -5.09 3.15 -121.68 -0.38 -5.47 16 3 C 0.03 0.33 11.35 -17.06 -0.19 0.14 16 4 C -0.23 -2.55 10.81 -40.00 -0.43 -2.98 16 5 C -0.08 -1.13 9.95 -38.94 -0.39 -1.52 16 6 C -0.10 -1.53 6.72 -83.69 -0.56 -2.09 16 7 C 0.42 7.34 7.00 -33.82 -0.24 7.10 16 8 O -0.45 -8.23 13.35 5.28 0.07 -8.16 16 9 C 0.51 9.89 8.10 -11.76 -0.10 9.80 16 10 O -0.53 -10.74 14.81 5.45 0.08 -10.66 16 11 N -0.62 -12.36 3.69 -185.70 -0.68 -13.05 16 12 C 0.09 1.83 6.63 -8.37 -0.06 1.78 16 13 C -0.01 -0.18 2.97 -91.11 -0.27 -0.45 16 14 C -0.51 -13.32 9.38 -34.44 -0.32 -13.64 16 15 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 16 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.89 -25.73 13.96 55.43 0.77 -24.96 16 18 Si 0.87 20.27 27.15 -169.99 -4.62 15.65 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.26 -5.75 5.72 56.52 0.32 -5.43 16 22 C 0.11 2.26 8.17 -8.50 -0.07 2.19 16 23 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.10 1.18 6.24 -51.93 -0.32 0.86 16 26 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 27 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 28 H 0.17 2.55 6.07 -52.49 -0.32 2.23 16 29 H 0.09 1.82 8.10 -51.93 -0.42 1.40 16 30 H 0.07 1.46 6.37 -51.93 -0.33 1.13 16 31 H 0.06 1.37 7.03 -51.93 -0.37 1.01 16 32 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.09 1.66 8.10 -51.93 -0.42 1.24 16 LS Contribution 291.95 15.07 4.40 4.40 Total: -1.00 -30.67 291.95 -6.38 -37.05 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -3.93 Total: 1.60 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -2.09 Total: 3.58 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: -0.29 Total: -43.47 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.15 Total: -18.82 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.62 Total: 15.65 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.67 -6.38 -37.05 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617895567.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.402 kcal (2) G-P(sol) polarization free energy of solvation -30.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds