Wall clock time and date at job start Mon Mar 30 2020 05:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21295 * 119.99943 * 2 1 4 4 C 1.46861 * 119.99751 * 179.97438 * 2 1 3 5 5 C 1.40573 * 120.51006 * 179.97438 * 4 2 1 6 6 C 1.36847 * 118.45775 * 179.75122 * 5 4 2 7 7 C 1.39343 * 119.41159 * 0.51319 * 6 5 4 8 8 N 1.38862 * 119.49907 * 179.74806 * 7 6 5 9 9 C 1.34777 * 120.00295 * 185.09179 * 8 7 6 10 10 O 1.21274 * 119.99550 * 354.90316 * 9 8 7 11 11 C 1.50698 * 120.00325 * 174.89879 * 9 8 7 12 12 H 1.09007 * 109.46493 * 60.00496 * 11 9 8 13 13 C 1.52996 * 109.47172 * 300.00340 * 11 9 8 14 14 C 1.50704 * 109.47126 * 180.02562 * 11 9 8 15 15 H 1.07997 * 119.99599 * 0.02562 * 14 11 9 16 16 C 1.37870 * 119.99724 * 180.02562 * 14 11 9 17 17 N 1.31510 * 120.00482 * 0.02562 * 16 14 11 18 18 Si 1.86808 * 119.99707 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47114 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47003 * 120.00113 * 18 16 14 21 21 H 1.48490 * 109.46999 * 239.99967 * 18 16 14 22 22 N 1.32572 * 120.99912 * 359.47241 * 7 6 5 23 23 C 1.31601 * 121.67908 * 0.27724 * 22 7 6 24 24 H 1.08997 * 109.47583 * 270.00580 * 1 2 3 25 25 H 1.09005 * 109.47259 * 30.00237 * 1 2 3 26 26 H 1.09001 * 109.46903 * 150.00037 * 1 2 3 27 27 H 1.08003 * 120.76734 * 0.04418 * 5 4 2 28 28 H 1.07996 * 120.29611 * 180.26412 * 6 5 4 29 29 H 0.97000 * 120.00285 * 5.09552 * 8 7 6 30 30 H 1.09003 * 109.46863 * 179.97438 * 13 11 9 31 31 H 1.09004 * 109.47136 * 60.00058 * 13 11 9 32 32 H 1.08994 * 109.47582 * 299.99832 * 13 11 9 33 33 H 0.97001 * 120.00137 * 179.97438 * 17 16 14 34 34 H 1.07997 * 119.76139 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0505 0.0000 4 6 2.2413 -1.2719 0.0006 5 6 3.6470 -1.2845 0.0000 6 6 4.2883 -2.4933 0.0058 7 6 3.5367 -3.6667 0.0011 8 7 4.1856 -4.8944 0.0017 9 6 3.4731 -6.0333 -0.1064 10 8 2.2611 -5.9921 -0.1110 11 6 4.1825 -7.3579 -0.2216 12 1 4.8007 -7.5169 0.6620 13 6 5.0674 -7.3557 -1.4696 14 6 3.1654 -8.4647 -0.3294 15 1 2.1108 -8.2321 -0.3163 16 6 3.5813 -9.7741 -0.4448 17 7 4.8654 -10.0574 -0.4603 18 14 2.3205 -11.1461 -0.5792 19 1 0.9534 -10.5678 -0.5383 20 1 2.5127 -11.8711 -1.8610 21 1 2.4934 -12.0899 0.5540 22 7 2.2115 -3.6287 0.0017 23 6 1.5528 -2.4894 0.0011 24 1 -0.3634 0.0001 1.0276 25 1 -0.3634 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2077 -0.3614 -0.0001 28 1 5.3673 -2.5376 0.0099 29 1 5.1517 -4.9323 0.0799 30 1 5.5808 -8.3136 -1.5527 31 1 5.8030 -6.5551 -1.3920 32 1 4.4492 -7.1966 -2.3531 33 1 5.1579 -10.9787 -0.5411 34 1 0.4728 -2.4946 0.0012 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000622834176.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:16:59 Heat of formation + Delta-G solvation = -51.913736 kcal Electronic energy + Delta-G solvation = -18801.239165 eV Core-core repulsion = 15698.792861 eV Total energy + Delta-G solvation = -3102.446304 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95473 -40.59458 -39.46379 -35.97597 -35.79316 -33.58529 -32.91970 -32.08191 -29.75095 -27.22504 -25.77895 -25.01072 -23.80451 -21.21954 -21.15263 -19.36607 -18.25794 -17.89656 -17.63885 -16.90773 -16.43683 -16.36465 -15.92585 -15.75352 -15.24789 -14.99314 -14.81971 -14.32842 -14.29848 -13.81472 -13.52794 -13.02210 -12.99148 -12.97500 -12.71236 -12.59736 -12.26481 -12.04150 -11.77935 -11.08389 -11.02648 -11.01375 -10.83532 -10.51241 -9.91500 -9.34174 -8.16862 -6.26956 -0.53131 0.30477 1.30372 1.40019 1.42722 1.55375 1.91316 1.97586 2.44958 2.88589 3.09844 3.13828 3.41832 3.82380 3.87222 3.94094 4.22656 4.30502 4.54540 4.66794 4.69938 4.72435 4.84607 4.90861 4.98853 5.03143 5.21359 5.27511 5.46377 5.67820 5.73612 5.90325 6.13471 6.33485 6.51858 6.80424 7.02638 7.36206 7.46999 8.89152 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.041730 B = 0.004061 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.819187 B = 6893.454916 C = 7468.860102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.412 3.588 3 O -0.503 6.503 4 C -0.278 4.278 5 C 0.005 3.995 6 C -0.212 4.212 7 C 0.376 3.624 8 N -0.652 5.652 9 C 0.511 3.489 10 O -0.510 6.510 11 C 0.028 3.972 12 H 0.050 0.950 13 C -0.122 4.122 14 C -0.529 4.529 15 H 0.050 0.950 16 C 0.022 3.978 17 N -0.910 5.910 18 Si 0.954 3.046 19 H -0.279 1.279 20 H -0.275 1.275 21 H -0.275 1.275 22 N -0.533 5.533 23 C 0.181 3.819 24 H 0.116 0.884 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.161 0.839 28 H 0.175 0.825 29 H 0.433 0.567 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.021 0.979 33 H 0.265 0.735 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 17.016 0.772 17.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.293 3.707 3 O -0.382 6.382 4 C -0.283 4.283 5 C -0.020 4.020 6 C -0.235 4.235 7 C 0.145 3.855 8 N -0.299 5.299 9 C 0.299 3.701 10 O -0.381 6.381 11 C 0.007 3.993 12 H 0.067 0.933 13 C -0.180 4.180 14 C -0.568 4.568 15 H 0.068 0.932 16 C -0.177 4.177 17 N -0.549 5.549 18 Si 0.780 3.220 19 H -0.204 1.204 20 H -0.200 1.200 21 H -0.200 1.200 22 N -0.249 5.249 23 C 0.021 3.979 24 H 0.135 0.865 25 H 0.114 0.886 26 H 0.121 0.879 27 H 0.179 0.821 28 H 0.192 0.808 29 H 0.273 0.727 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.125 16.475 0.735 16.628 hybrid contribution 0.384 -0.415 -0.011 0.565 sum -1.741 16.060 0.724 16.171 Atomic orbital electron populations 1.22289 0.90652 1.06164 1.06331 1.22604 0.93125 0.86037 0.68933 1.90521 1.73141 1.35084 1.39487 1.21591 0.95857 0.96600 1.14269 1.21578 0.93415 0.98614 0.88418 1.21473 1.02807 0.90076 1.09170 1.19301 0.89372 0.86683 0.90176 1.43947 1.12099 1.03246 1.70621 1.22027 0.88125 0.86241 0.73664 1.90626 1.15678 1.86776 1.45005 1.18865 0.95473 0.87386 0.97600 0.93252 1.21592 0.97983 1.02638 0.95792 1.21291 0.93120 0.91540 1.50817 0.93217 1.25547 0.97174 1.00426 0.94576 1.69935 1.14450 1.19821 1.50675 0.85556 0.79285 0.79095 0.78041 1.20446 1.20025 1.20015 1.67821 1.08216 1.31010 1.17838 1.23562 1.01425 0.85049 0.87847 0.86542 0.88588 0.87858 0.82124 0.80770 0.72712 0.90805 0.92530 0.95937 0.92534 0.79377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.36 9.76 71.24 0.70 -1.67 16 2 C 0.41 8.31 7.22 27.95 0.20 8.51 16 3 O -0.50 -13.21 17.15 -3.08 -0.05 -13.27 16 4 C -0.28 -6.28 5.89 -20.06 -0.12 -6.40 16 5 C 0.01 0.11 9.66 22.51 0.22 0.33 16 6 C -0.21 -4.73 9.86 22.21 0.22 -4.51 16 7 C 0.38 11.78 7.41 133.11 0.99 12.76 16 8 N -0.65 -21.54 5.22 -308.50 -1.61 -23.15 16 9 C 0.51 22.74 7.10 87.66 0.62 23.36 16 10 O -0.51 -26.65 13.70 -3.01 -0.04 -26.69 16 11 C 0.03 1.35 2.64 -12.29 -0.03 1.32 16 12 H 0.05 2.42 8.14 -2.38 -0.02 2.40 16 13 C -0.12 -5.28 8.87 71.98 0.64 -4.64 16 14 C -0.53 -29.82 8.37 25.60 0.21 -29.61 16 15 H 0.05 3.02 6.75 -2.91 -0.02 3.00 16 16 C 0.02 1.21 5.30 84.65 0.45 1.66 16 17 N -0.91 -49.63 11.32 21.44 0.24 -49.38 16 18 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 19 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 N -0.53 -18.74 7.84 -191.87 -1.50 -20.24 16 23 C 0.18 4.65 10.54 85.12 0.90 5.55 16 24 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.10 0.94 6.48 -2.39 -0.02 0.92 16 27 H 0.16 2.87 7.72 -2.91 -0.02 2.85 16 28 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 29 H 0.43 10.70 8.27 -92.71 -0.77 9.94 16 30 H 0.07 3.56 6.07 -2.39 -0.01 3.54 16 31 H 0.06 1.89 7.69 -2.39 -0.02 1.88 16 32 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 34 H 0.19 3.56 6.37 -2.91 -0.02 3.55 16 Total: -1.00 -73.38 297.01 4.42 -68.96 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: 0.37 Total: 10.98 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 4.99 Total: 6.67 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -2.87 Total: -92.78 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -0.09 Total: -39.96 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Total: -73.38 4.42 -68.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000622834176.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.046 kcal (2) G-P(sol) polarization free energy of solvation -73.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds