Wall clock time and date at job start Mon Mar 30 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99757 * 2 1 4 4 C 1.46867 * 119.99874 * 180.02562 * 2 1 3 5 5 C 1.40564 * 120.51071 * 179.97438 * 4 2 1 6 6 C 1.36855 * 118.46000 * 179.97438 * 5 4 2 7 7 C 1.39334 * 119.40849 * 359.97438 * 6 5 4 8 8 N 1.38868 * 119.49719 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99769 * 185.08488 * 8 7 6 10 10 O 1.21267 * 120.00183 * 354.92253 * 9 8 7 11 11 C 1.50700 * 119.99598 * 174.91755 * 9 8 7 12 12 H 1.08997 * 109.47057 * 300.00107 * 11 9 8 13 13 C 1.52996 * 109.47251 * 60.00244 * 11 9 8 14 14 C 1.50697 * 109.47109 * 180.02562 * 11 9 8 15 15 H 1.08009 * 120.00048 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00545 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00235 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99579 * 359.97438 * 16 14 11 19 19 H 1.48507 * 109.46609 * 90.00005 * 18 16 14 20 20 H 1.48493 * 109.47108 * 210.00130 * 18 16 14 21 21 H 1.48498 * 109.47169 * 330.00369 * 18 16 14 22 22 N 1.32574 * 121.00644 * 0.25518 * 7 6 5 23 23 C 1.31605 * 121.67415 * 359.47674 * 22 7 6 24 24 H 1.09005 * 109.47410 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46962 * 299.99728 * 1 2 3 26 26 H 1.08999 * 109.47363 * 59.99683 * 1 2 3 27 27 H 1.08005 * 120.77379 * 359.95039 * 5 4 2 28 28 H 1.07996 * 120.29232 * 180.02562 * 6 5 4 29 29 H 0.96992 * 120.00171 * 5.09440 * 8 7 6 30 30 H 1.09002 * 109.47363 * 299.99638 * 13 11 9 31 31 H 1.09006 * 109.47260 * 179.97438 * 13 11 9 32 32 H 1.08997 * 109.47201 * 59.99952 * 13 11 9 33 33 H 0.97003 * 119.99228 * 179.97438 * 17 16 14 34 34 H 1.08002 * 119.76653 * 180.26521 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 3.6469 -1.2845 -0.0011 6 6 4.2883 -2.4934 -0.0011 7 6 3.5367 -3.6667 0.0000 8 7 4.1856 -4.8944 -0.0005 9 6 3.4725 -6.0335 -0.1029 10 8 2.2605 -5.9923 -0.1018 11 6 4.1814 -7.3583 -0.2189 12 1 4.8075 -7.3585 -1.1111 13 6 5.0551 -7.5792 1.0175 14 6 3.1638 -8.4653 -0.3197 15 1 2.1092 -8.2328 -0.3012 16 6 3.5790 -9.7750 -0.4356 17 7 2.6910 -10.7411 -0.5231 18 14 5.4030 -10.1771 -0.4683 19 1 5.8838 -10.4077 0.9177 20 1 5.6256 -11.4007 -1.2796 21 1 6.1493 -9.0424 -1.0688 22 7 2.2115 -3.6288 -0.0040 23 6 1.5527 -2.4895 0.0010 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 4.2078 -0.3615 -0.0019 28 1 5.3673 -2.5376 -0.0011 29 1 5.1520 -4.9322 0.0730 30 1 5.7912 -6.7785 1.0900 31 1 5.5675 -8.5377 0.9338 32 1 4.4290 -7.5790 1.9096 33 1 2.9832 -11.6624 -0.6049 34 1 0.4727 -2.4947 0.0018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000622834177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:02 Heat of formation + Delta-G solvation = -18.305397 kcal Electronic energy + Delta-G solvation = -18843.270866 eV Core-core repulsion = 15742.281930 eV Total energy + Delta-G solvation = -3100.988937 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.85911 -39.44185 -38.30185 -34.66397 -33.98165 -32.56759 -31.79137 -31.12832 -28.90816 -25.25162 -24.68971 -23.99741 -22.44370 -20.28115 -19.66777 -18.17824 -16.94229 -16.75628 -16.42963 -15.49976 -15.27456 -15.02733 -14.79390 -14.63972 -14.34706 -13.66501 -13.49112 -13.27396 -12.87056 -12.76748 -12.41209 -12.33831 -12.32872 -11.72707 -11.17199 -10.76730 -10.52021 -10.38981 -10.06667 -10.01554 -9.74597 -9.58448 -9.21213 -8.67384 -8.57897 -8.23626 -6.12779 -4.14512 0.46867 1.24638 2.27339 3.10789 3.16969 3.23437 3.30924 3.33267 3.91574 3.94075 4.30107 4.37355 4.71313 4.77405 4.89179 4.98003 5.15830 5.19961 5.20491 5.48082 5.58274 5.68617 5.80419 5.96506 6.05915 6.13234 6.22370 6.29129 6.56146 6.79714 7.02422 7.28957 7.37506 7.55146 8.10962 8.44055 8.82247 9.05835 9.44608 10.99901 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.047600 B = 0.004127 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.092968 B = 6782.821555 C = 7269.631564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.408 3.592 3 O -0.474 6.474 4 C -0.284 4.284 5 C 0.011 3.989 6 C -0.233 4.233 7 C 0.407 3.593 8 N -0.666 5.666 9 C 0.512 3.488 10 O -0.450 6.450 11 C -0.001 4.001 12 H 0.056 0.944 13 C -0.148 4.148 14 C -0.511 4.511 15 H 0.095 0.905 16 C 0.073 3.927 17 N -0.892 5.892 18 Si 0.884 3.116 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.267 1.267 22 N -0.485 5.485 23 C 0.189 3.811 24 H 0.084 0.916 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.140 0.860 29 H 0.415 0.585 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.266 0.734 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 17.850 1.581 18.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.288 3.712 3 O -0.351 6.351 4 C -0.289 4.289 5 C -0.014 4.014 6 C -0.256 4.256 7 C 0.174 3.826 8 N -0.312 5.312 9 C 0.299 3.701 10 O -0.315 6.315 11 C -0.022 4.022 12 H 0.074 0.926 13 C -0.206 4.206 14 C -0.549 4.549 15 H 0.113 0.887 16 C -0.130 4.130 17 N -0.529 5.529 18 Si 0.714 3.286 19 H -0.204 1.204 20 H -0.222 1.222 21 H -0.192 1.192 22 N -0.199 5.199 23 C 0.028 3.972 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.160 0.840 28 H 0.158 0.842 29 H 0.252 0.748 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.223 17.219 1.532 17.429 hybrid contribution 2.010 0.249 0.053 2.026 sum 4.233 17.467 1.586 18.043 Atomic orbital electron populations 1.22245 0.93808 1.04951 1.04898 1.22170 0.91511 0.87199 0.70335 1.90519 1.72132 1.34388 1.38068 1.21325 0.95336 0.96392 1.15879 1.21240 0.93211 0.98013 0.88949 1.21218 1.01269 0.91596 1.11558 1.19041 0.89223 0.86191 0.88141 1.44409 1.11420 1.04015 1.71320 1.21785 0.88640 0.84799 0.74851 1.90704 1.13764 1.85623 1.41428 1.19366 0.96704 0.90205 0.95960 0.92592 1.22167 0.98535 0.99927 0.99937 1.20895 0.94568 0.88585 1.50820 0.88718 1.24966 0.97276 0.96147 0.94575 1.69875 1.33513 1.00017 1.49538 0.86923 0.86236 0.77737 0.77716 1.20409 1.22160 1.19237 1.67964 1.06711 1.28735 1.16523 1.23275 1.00377 0.85694 0.87838 0.89684 0.88762 0.88754 0.83987 0.84216 0.74777 0.94855 0.92895 0.92096 0.92416 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.46 10.19 36.01 0.37 -1.10 16 2 C 0.41 4.46 7.22 -30.82 -0.22 4.24 16 3 O -0.47 -6.53 17.15 5.55 0.10 -6.44 16 4 C -0.28 -3.37 5.89 -104.91 -0.62 -3.99 16 5 C 0.01 0.13 9.66 -39.21 -0.38 -0.25 16 6 C -0.23 -2.70 9.86 -39.67 -0.39 -3.10 16 7 C 0.41 6.26 7.41 -154.93 -1.15 5.11 16 8 N -0.67 -10.50 5.29 -11.44 -0.06 -10.56 16 9 C 0.51 10.74 7.10 -10.98 -0.08 10.66 16 10 O -0.45 -11.25 13.69 5.57 0.08 -11.17 16 11 C 0.00 -0.01 2.24 -92.93 -0.21 -0.22 16 12 H 0.06 1.19 7.20 -51.93 -0.37 0.81 16 13 C -0.15 -2.84 8.57 37.16 0.32 -2.52 16 14 C -0.51 -14.25 8.96 -34.44 -0.31 -14.56 16 15 H 0.09 3.03 7.00 -52.48 -0.37 2.66 16 16 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 17 N -0.89 -26.93 13.96 55.43 0.77 -26.15 16 18 Si 0.88 20.50 24.38 -169.99 -4.14 16.36 16 19 H -0.28 -6.22 6.87 56.52 0.39 -5.83 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.27 -5.69 6.53 56.52 0.37 -5.32 16 22 N -0.48 -8.33 7.84 -11.99 -0.09 -8.43 16 23 C 0.19 2.48 10.62 -17.03 -0.18 2.30 16 24 H 0.08 0.50 5.62 -51.93 -0.29 0.21 16 25 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.14 1.41 7.72 -52.48 -0.41 1.00 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.42 4.86 7.97 -40.82 -0.33 4.53 16 30 H 0.03 0.48 7.46 -51.93 -0.39 0.09 16 31 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.17 1.67 5.93 -52.49 -0.31 1.36 16 LS Contribution 288.96 15.07 4.35 4.35 Total: -1.00 -35.19 288.96 -5.45 -40.64 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -3.50 Total: 2.87 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -2.95 Total: -1.48 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: 0.62 Total: -45.14 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: 0.17 Total: -17.61 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.14 Total: 16.36 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -35.19 -5.45 -40.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000622834177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.334 kcal (2) G-P(sol) polarization free energy of solvation -35.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds