Wall clock time and date at job start Mon Mar 30 2020 05:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21284 * 119.99757 * 2 1 4 4 C 1.46867 * 119.99874 * 180.02562 * 2 1 3 5 5 C 1.40564 * 120.51071 * 179.97438 * 4 2 1 6 6 C 1.36855 * 118.46000 * 179.97438 * 5 4 2 7 7 C 1.39334 * 119.40849 * 359.97438 * 6 5 4 8 8 N 1.38868 * 119.49719 * 179.97438 * 7 6 5 9 9 C 1.34781 * 119.99769 * 185.08488 * 8 7 6 10 10 O 1.21267 * 120.00183 * 354.92253 * 9 8 7 11 11 C 1.50700 * 119.99598 * 174.91755 * 9 8 7 12 12 H 1.08997 * 109.47057 * 300.00107 * 11 9 8 13 13 C 1.52996 * 109.47251 * 60.00244 * 11 9 8 14 14 C 1.50697 * 109.47109 * 180.02562 * 11 9 8 15 15 H 1.08009 * 120.00048 * 359.97438 * 14 11 9 16 16 C 1.37878 * 120.00545 * 179.97438 * 14 11 9 17 17 N 1.31515 * 120.00235 * 179.97438 * 16 14 11 18 18 Si 1.86803 * 119.99579 * 359.97438 * 16 14 11 19 19 H 1.48507 * 109.46609 * 90.00005 * 18 16 14 20 20 H 1.48493 * 109.47108 * 210.00130 * 18 16 14 21 21 H 1.48498 * 109.47169 * 330.00369 * 18 16 14 22 22 N 1.32574 * 121.00644 * 0.25518 * 7 6 5 23 23 C 1.31605 * 121.67415 * 359.47674 * 22 7 6 24 24 H 1.09005 * 109.47410 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46962 * 299.99728 * 1 2 3 26 26 H 1.08999 * 109.47363 * 59.99683 * 1 2 3 27 27 H 1.08005 * 120.77379 * 359.95039 * 5 4 2 28 28 H 1.07996 * 120.29232 * 180.02562 * 6 5 4 29 29 H 0.96992 * 120.00171 * 5.09440 * 8 7 6 30 30 H 1.09002 * 109.47363 * 299.99638 * 13 11 9 31 31 H 1.09006 * 109.47260 * 179.97438 * 13 11 9 32 32 H 1.08997 * 109.47201 * 59.99952 * 13 11 9 33 33 H 0.97003 * 119.99228 * 179.97438 * 17 16 14 34 34 H 1.08002 * 119.76653 * 180.26521 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 6 2.2413 -1.2719 -0.0006 5 6 3.6469 -1.2845 -0.0011 6 6 4.2883 -2.4934 -0.0011 7 6 3.5367 -3.6667 0.0000 8 7 4.1856 -4.8944 -0.0005 9 6 3.4725 -6.0335 -0.1029 10 8 2.2605 -5.9923 -0.1018 11 6 4.1814 -7.3583 -0.2189 12 1 4.8075 -7.3585 -1.1111 13 6 5.0551 -7.5792 1.0175 14 6 3.1638 -8.4653 -0.3197 15 1 2.1092 -8.2328 -0.3012 16 6 3.5790 -9.7750 -0.4356 17 7 2.6910 -10.7411 -0.5231 18 14 5.4030 -10.1771 -0.4683 19 1 5.8838 -10.4077 0.9177 20 1 5.6256 -11.4007 -1.2796 21 1 6.1493 -9.0424 -1.0688 22 7 2.2115 -3.6288 -0.0040 23 6 1.5527 -2.4895 0.0010 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 4.2078 -0.3615 -0.0019 28 1 5.3673 -2.5376 -0.0011 29 1 5.1520 -4.9322 0.0730 30 1 5.7912 -6.7785 1.0900 31 1 5.5675 -8.5377 0.9338 32 1 4.4290 -7.5790 1.9096 33 1 2.9832 -11.6624 -0.6049 34 1 0.4727 -2.4947 0.0018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000622834177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:02 Heat of formation + Delta-G solvation = -44.477574 kcal Electronic energy + Delta-G solvation = -18844.405777 eV Core-core repulsion = 15742.281930 eV Total energy + Delta-G solvation = -3102.123847 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.99301 -40.65458 -39.50354 -36.01364 -35.83367 -33.61871 -33.40672 -32.37429 -29.81139 -27.13284 -25.97868 -25.05016 -23.88291 -21.24023 -21.12016 -19.37091 -18.79324 -17.86649 -17.71455 -16.90672 -16.58105 -16.41051 -15.95018 -15.79068 -15.24949 -15.14695 -15.00076 -14.42790 -14.35082 -14.04438 -13.81657 -13.45553 -13.02443 -12.95962 -12.85265 -12.55205 -12.17656 -11.81645 -11.47069 -11.24265 -11.05479 -11.01955 -10.86249 -10.73561 -9.96129 -9.36598 -8.26683 -6.35651 -0.54585 0.29797 1.28377 1.35358 1.41845 1.53012 1.87359 1.90387 2.35296 2.87107 3.07049 3.07736 3.37306 3.81628 3.84645 3.89622 4.12988 4.24096 4.39365 4.49589 4.57152 4.64970 4.67129 4.74922 4.87084 5.00350 5.03037 5.18283 5.25622 5.43705 5.50100 5.68683 6.12703 6.35783 6.50574 6.78094 7.00283 7.25600 7.41819 8.90913 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.047600 B = 0.004127 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.092968 B = 6782.821555 C = 7269.631564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.412 3.588 3 O -0.502 6.502 4 C -0.277 4.277 5 C 0.005 3.995 6 C -0.207 4.207 7 C 0.375 3.625 8 N -0.649 5.649 9 C 0.516 3.484 10 O -0.508 6.508 11 C -0.004 4.004 12 H 0.077 0.923 13 C -0.143 4.143 14 C -0.524 4.524 15 H 0.030 0.970 16 C 0.007 3.993 17 N -0.952 5.952 18 Si 0.960 3.040 19 H -0.260 1.260 20 H -0.302 1.302 21 H -0.226 1.226 22 N -0.536 5.536 23 C 0.178 3.822 24 H 0.096 0.904 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.163 0.837 28 H 0.180 0.820 29 H 0.436 0.564 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.267 0.733 34 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.502 20.207 1.833 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.293 3.707 3 O -0.381 6.381 4 C -0.282 4.282 5 C -0.021 4.021 6 C -0.230 4.230 7 C 0.144 3.856 8 N -0.297 5.297 9 C 0.304 3.696 10 O -0.377 6.377 11 C -0.026 4.026 12 H 0.095 0.905 13 C -0.201 4.201 14 C -0.563 4.563 15 H 0.048 0.952 16 C -0.190 4.190 17 N -0.592 5.592 18 Si 0.784 3.216 19 H -0.186 1.186 20 H -0.230 1.230 21 H -0.148 1.148 22 N -0.251 5.251 23 C 0.019 3.981 24 H 0.115 0.885 25 H 0.127 0.873 26 H 0.126 0.874 27 H 0.180 0.820 28 H 0.198 0.802 29 H 0.277 0.723 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 5.482 19.658 1.795 20.487 hybrid contribution 0.854 -0.315 -0.033 0.911 sum 6.336 19.343 1.762 20.430 Atomic orbital electron populations 1.22287 0.90875 1.06217 1.06170 1.22574 0.93036 0.86116 0.68934 1.90517 1.73030 1.35067 1.39518 1.21594 0.96016 0.96487 1.14063 1.21597 0.93238 0.98815 0.88409 1.21490 1.02941 0.89820 1.08762 1.19283 0.89268 0.86737 0.90336 1.43824 1.12081 1.02937 1.70874 1.21519 0.87946 0.85941 0.74227 1.90689 1.16044 1.86596 1.44416 1.19303 0.95836 0.89036 0.98375 0.90547 1.22068 0.98853 1.01847 0.97285 1.21074 0.93341 0.91154 1.50682 0.95190 1.26045 1.03680 0.95510 0.93758 1.70083 1.36840 1.00646 1.51654 0.85710 0.78833 0.78296 0.78731 1.18570 1.23006 1.14843 1.67821 1.08490 1.31036 1.17770 1.23572 1.01360 0.85165 0.88040 0.88496 0.87326 0.87391 0.81984 0.80246 0.72291 0.89033 0.93318 0.93514 0.92387 0.79670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.42 10.19 71.24 0.73 -1.69 16 2 C 0.41 8.17 7.22 27.95 0.20 8.37 16 3 O -0.50 -12.86 17.15 -3.04 -0.05 -12.91 16 4 C -0.28 -6.06 5.89 -20.05 -0.12 -6.18 16 5 C 0.00 0.09 9.66 22.51 0.22 0.31 16 6 C -0.21 -4.12 9.86 22.21 0.22 -3.90 16 7 C 0.38 10.97 7.41 133.11 0.99 11.96 16 8 N -0.65 -19.17 5.29 -308.50 -1.63 -20.80 16 9 C 0.52 21.71 7.10 87.66 0.62 22.33 16 10 O -0.51 -26.73 13.69 -2.99 -0.04 -26.77 16 11 C 0.00 -0.16 2.24 -12.29 -0.03 -0.19 16 12 H 0.08 3.01 7.20 -2.39 -0.02 2.99 16 13 C -0.14 -5.03 8.57 71.98 0.62 -4.42 16 14 C -0.52 -30.53 8.96 25.60 0.23 -30.30 16 15 H 0.03 2.08 7.00 -2.91 -0.02 2.06 16 16 C 0.01 0.38 5.45 84.65 0.46 0.84 16 17 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 18 Si 0.96 41.46 24.38 68.60 1.67 43.13 16 19 H -0.26 -10.48 6.87 99.48 0.68 -9.79 16 20 H -0.30 -13.35 7.11 99.48 0.71 -12.65 16 21 H -0.23 -8.19 6.53 99.48 0.65 -7.54 16 22 N -0.54 -18.49 7.84 -191.86 -1.50 -19.99 16 23 C 0.18 4.56 10.62 85.13 0.90 5.46 16 24 H 0.10 0.95 5.62 -2.38 -0.01 0.93 16 25 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.16 2.63 7.72 -2.91 -0.02 2.61 16 28 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 29 H 0.44 8.43 7.97 -92.71 -0.74 7.69 16 30 H 0.09 2.15 7.46 -2.39 -0.02 2.13 16 31 H 0.05 1.76 3.28 -2.38 -0.01 1.75 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 34 H 0.19 3.64 5.93 -2.91 -0.02 3.62 16 Total: -1.00 -84.31 288.96 4.11 -80.20 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.33 Total: 14.60 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 5.04 Total: 2.60 kcal Atomic # 7 Polarization: -98.02 SS G_CDS: -2.84 Total: -100.86 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.09 Total: -39.68 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 1.67 Total: 43.13 kcal Total: -84.31 4.11 -80.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000622834177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.723 kcal (2) G-P(sol) polarization free energy of solvation -84.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds