Wall clock time and date at job start Mon Mar 30 2020 05:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21326 * 119.99839 * 2 1 4 4 C 1.46601 * 119.99946 * 180.02562 * 2 1 3 5 5 C 1.38545 * 120.90059 * 0.22793 * 4 2 1 6 6 N 1.34134 * 120.30893 * 180.24662 * 5 4 2 7 7 H 0.97003 * 118.81259 * 179.75030 * 6 5 4 8 8 C 1.35459 * 122.38322 * 359.77607 * 6 5 4 9 9 C 1.35132 * 121.84811 * 359.97215 * 8 6 5 10 10 C 1.41320 * 119.39854 * 0.02562 * 9 8 6 11 11 N 1.34122 * 121.07036 * 179.97438 * 10 9 8 12 12 C 1.32553 * 119.99920 * 5.33417 * 11 10 9 13 13 O 1.21657 * 119.99941 * 55.45484 * 12 11 10 14 14 C 1.50700 * 119.99498 * 235.45236 * 12 11 10 15 15 H 1.08992 * 109.47075 * 60.00329 * 14 12 11 16 16 C 1.53000 * 109.47186 * 299.99675 * 14 12 11 17 17 C 1.50703 * 109.46678 * 180.02562 * 14 12 11 18 18 H 1.08001 * 119.99913 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99869 * 180.02562 * 17 14 12 20 20 N 1.31509 * 120.00231 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99933 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47398 * 59.99741 * 21 19 17 23 23 H 1.48499 * 109.47062 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47082 * 299.99861 * 21 19 17 25 25 H 1.08999 * 109.46697 * 269.99340 * 1 2 3 26 26 H 1.08994 * 109.47093 * 29.99512 * 1 2 3 27 27 H 1.08996 * 109.47019 * 149.99517 * 1 2 3 28 28 H 1.08000 * 119.84631 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.07309 * 179.97438 * 8 6 5 30 30 H 1.08006 * 120.30163 * 179.97438 * 9 8 6 31 31 H 1.08992 * 109.47648 * 300.00304 * 16 14 12 32 32 H 1.09000 * 109.46656 * 60.00954 * 16 14 12 33 33 H 1.09003 * 109.46796 * 180.02562 * 16 14 12 34 34 H 0.97003 * 120.00498 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2400 -1.2696 -0.0006 5 6 1.5663 -2.4802 -0.0058 6 7 2.2488 -3.6348 -0.0013 7 1 1.7551 -4.4698 -0.0015 8 6 3.6028 -3.6772 0.0040 9 6 4.3514 -2.5522 0.0044 10 6 3.7107 -1.2926 -0.0002 11 7 4.4208 -0.1548 0.0007 12 6 5.7417 -0.1979 -0.1009 13 8 6.2613 -0.7729 -1.0387 14 6 6.5998 0.4654 0.9454 15 1 6.3959 0.0193 1.9187 16 6 6.2814 1.9611 0.9929 17 6 8.0537 0.2726 0.5986 18 1 8.3287 -0.2757 -0.2903 19 6 9.0327 0.7954 1.4167 20 7 8.6978 1.4627 2.4993 21 14 10.8348 0.5559 0.9872 22 1 11.1129 1.1640 -0.3387 23 1 11.6805 1.2096 2.0182 24 1 11.1438 -0.8959 0.9406 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5139 28 1 0.4863 -2.4942 -0.0092 29 1 4.0978 -4.6371 0.0079 30 1 5.4296 -2.6151 0.0091 31 1 6.4854 2.4072 0.0196 32 1 5.2299 2.1009 1.2436 33 1 6.9024 2.4409 1.7494 34 1 9.3866 1.8308 3.0747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000622850253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:06 Heat of formation + Delta-G solvation = -7.257402 kcal Electronic energy + Delta-G solvation = -19284.313044 eV Core-core repulsion = 16183.803184 eV Total energy + Delta-G solvation = -3100.509860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.71681 -38.52746 -38.46137 -34.43252 -33.45399 -32.45513 -30.95406 -29.98675 -29.09569 -24.91128 -24.52331 -23.97383 -21.65758 -20.63296 -19.03109 -18.31752 -16.75614 -16.15168 -15.86274 -15.44107 -15.10395 -14.82218 -14.71816 -14.28911 -14.16398 -13.61830 -13.43017 -12.94411 -12.27695 -12.22948 -12.08492 -11.94090 -11.34758 -11.03027 -10.78194 -10.58686 -10.37040 -9.95974 -9.83685 -9.69539 -9.59895 -9.11585 -8.70702 -8.26164 -7.99518 -7.24904 -5.84112 -3.88494 0.75332 1.15683 2.62265 2.66915 3.34337 3.44622 3.46922 3.52647 4.02090 4.16057 4.20847 4.52073 4.59590 4.91876 4.98514 5.07302 5.34558 5.43015 5.46829 5.52690 5.66660 5.92210 6.07823 6.46656 6.65314 6.76771 7.04641 7.18753 7.33764 7.40215 7.83733 7.97943 8.00695 8.26133 8.43822 8.52213 9.17031 9.39911 9.75056 11.22553 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.005407 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.501373 B = 5176.947045 C = 5877.454685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.389 3.611 3 O -0.415 6.415 4 C -0.247 4.247 5 C 0.173 3.827 6 N -0.585 5.585 7 H 0.419 0.581 8 C 0.097 3.903 9 C -0.204 4.204 10 C 0.285 3.715 11 N -0.557 5.557 12 C 0.489 3.511 13 O -0.532 6.532 14 C 0.032 3.968 15 H 0.048 0.952 16 C -0.122 4.122 17 C -0.503 4.503 18 H 0.070 0.930 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.176 0.824 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.085 0.915 34 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.902 -13.962 -2.193 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.263 3.737 3 O -0.286 6.286 4 C -0.258 4.258 5 C 0.039 3.961 6 N -0.190 5.190 7 H 0.255 0.745 8 C -0.029 4.029 9 C -0.229 4.229 10 C 0.116 3.884 11 N -0.285 5.285 12 C 0.280 3.720 13 O -0.409 6.409 14 C 0.011 3.989 15 H 0.066 0.934 16 C -0.180 4.180 17 C -0.542 4.542 18 H 0.088 0.912 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.204 1.204 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.094 0.906 28 H 0.193 0.807 29 H 0.182 0.818 30 H 0.172 0.828 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.041 -12.561 -2.500 23.784 hybrid contribution 1.148 -1.095 -0.142 1.593 sum -18.893 -13.656 -2.642 23.461 Atomic orbital electron populations 1.22253 0.94764 1.04169 1.04191 1.21641 0.90260 0.87536 0.74283 1.90702 1.71281 1.33095 1.33474 1.21090 0.92370 0.93951 1.18375 1.22385 0.97772 0.84850 0.91048 1.40572 1.06376 1.08847 1.63180 0.74519 1.21533 0.82077 1.00659 0.98680 1.21990 1.02221 0.91924 1.06791 1.19726 0.91150 0.88540 0.88996 1.68595 1.09576 1.26435 1.23904 1.22667 0.85523 0.76745 0.87106 1.90585 1.76895 1.40003 1.33436 1.18840 0.93574 0.94157 0.92318 0.93426 1.21554 0.98336 0.96998 1.01104 1.21183 0.89404 1.34149 1.09459 0.91166 1.24958 0.99072 0.95218 0.94985 1.69903 1.32942 1.36741 1.13928 0.86553 0.84590 0.78232 0.77976 1.20252 1.21401 1.20359 0.88991 0.89599 0.90606 0.80700 0.81761 0.82806 0.95620 0.95692 0.89627 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 9.77 36.01 0.35 -1.12 16 2 C 0.39 5.48 7.22 -30.93 -0.22 5.26 16 3 O -0.41 -8.41 16.12 5.52 0.09 -8.32 16 4 C -0.25 -3.31 6.05 -102.83 -0.62 -3.93 16 5 C 0.17 1.13 10.57 -16.43 -0.17 0.96 16 6 N -0.59 -2.99 5.15 -12.62 -0.06 -3.05 16 7 H 0.42 0.09 8.87 -40.82 -0.36 -0.27 16 8 C 0.10 0.85 11.09 -17.06 -0.19 0.66 16 9 C -0.20 -3.23 8.92 -39.52 -0.35 -3.59 16 10 C 0.28 5.42 6.73 -82.11 -0.55 4.87 16 11 N -0.56 -13.76 8.57 -8.84 -0.08 -13.83 16 12 C 0.49 13.56 5.63 -11.97 -0.07 13.50 16 13 O -0.53 -15.53 14.72 5.23 0.08 -15.45 16 14 C 0.03 0.94 2.71 -92.92 -0.25 0.69 16 15 H 0.05 1.46 8.14 -51.93 -0.42 1.04 16 16 C -0.12 -3.51 8.88 37.16 0.33 -3.18 16 17 C -0.50 -15.76 8.37 -34.44 -0.29 -16.05 16 18 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 19 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 20 N -0.90 -27.46 11.32 55.43 0.63 -26.83 16 21 Si 0.90 23.20 29.54 -169.99 -5.02 18.18 16 22 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 25 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.28 6.50 -51.93 -0.34 -0.06 16 28 H 0.18 0.21 6.38 -52.49 -0.33 -0.12 16 29 H 0.17 0.82 8.06 -52.49 -0.42 0.39 16 30 H 0.15 2.92 6.45 -52.48 -0.34 2.58 16 31 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.02 0.67 8.05 -51.93 -0.42 0.25 16 33 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 34 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 295.99 15.07 4.46 4.46 Total: -1.00 -43.76 295.99 -5.75 -49.51 By element: Atomic # 1 Polarization: -0.67 SS G_CDS: -3.71 Total: -4.38 kcal Atomic # 6 Polarization: 1.86 SS G_CDS: -2.13 Total: -0.27 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.49 Total: -43.72 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -43.76 -5.75 -49.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000622850253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.249 kcal (2) G-P(sol) polarization free energy of solvation -43.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds