Wall clock time and date at job start Mon Mar 30 2020 05:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21326 * 119.99839 * 2 1 4 4 C 1.46601 * 119.99946 * 180.02562 * 2 1 3 5 5 C 1.38545 * 120.90059 * 0.22793 * 4 2 1 6 6 N 1.34134 * 120.30893 * 180.24662 * 5 4 2 7 7 H 0.97003 * 118.81259 * 179.75030 * 6 5 4 8 8 C 1.35459 * 122.38322 * 359.77607 * 6 5 4 9 9 C 1.35132 * 121.84811 * 359.97215 * 8 6 5 10 10 C 1.41320 * 119.39854 * 0.02562 * 9 8 6 11 11 N 1.34122 * 121.07036 * 179.97438 * 10 9 8 12 12 C 1.32553 * 119.99920 * 5.33417 * 11 10 9 13 13 O 1.21657 * 119.99941 * 55.45484 * 12 11 10 14 14 C 1.50700 * 119.99498 * 235.45236 * 12 11 10 15 15 H 1.08992 * 109.47075 * 60.00329 * 14 12 11 16 16 C 1.53000 * 109.47186 * 299.99675 * 14 12 11 17 17 C 1.50703 * 109.46678 * 180.02562 * 14 12 11 18 18 H 1.08001 * 119.99913 * 359.97438 * 17 14 12 19 19 C 1.37878 * 119.99869 * 180.02562 * 17 14 12 20 20 N 1.31509 * 120.00231 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99933 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47398 * 59.99741 * 21 19 17 23 23 H 1.48499 * 109.47062 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47082 * 299.99861 * 21 19 17 25 25 H 1.08999 * 109.46697 * 269.99340 * 1 2 3 26 26 H 1.08994 * 109.47093 * 29.99512 * 1 2 3 27 27 H 1.08996 * 109.47019 * 149.99517 * 1 2 3 28 28 H 1.08000 * 119.84631 * 359.97438 * 5 4 2 29 29 H 1.08001 * 119.07309 * 179.97438 * 8 6 5 30 30 H 1.08006 * 120.30163 * 179.97438 * 9 8 6 31 31 H 1.08992 * 109.47648 * 300.00304 * 16 14 12 32 32 H 1.09000 * 109.46656 * 60.00954 * 16 14 12 33 33 H 1.09003 * 109.46796 * 180.02562 * 16 14 12 34 34 H 0.97003 * 120.00498 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2400 -1.2696 -0.0006 5 6 1.5663 -2.4802 -0.0058 6 7 2.2488 -3.6348 -0.0013 7 1 1.7551 -4.4698 -0.0015 8 6 3.6028 -3.6772 0.0040 9 6 4.3514 -2.5522 0.0044 10 6 3.7107 -1.2926 -0.0002 11 7 4.4208 -0.1548 0.0007 12 6 5.7417 -0.1979 -0.1009 13 8 6.2613 -0.7729 -1.0387 14 6 6.5998 0.4654 0.9454 15 1 6.3959 0.0193 1.9187 16 6 6.2814 1.9611 0.9929 17 6 8.0537 0.2726 0.5986 18 1 8.3287 -0.2757 -0.2903 19 6 9.0327 0.7954 1.4167 20 7 8.6978 1.4627 2.4993 21 14 10.8348 0.5559 0.9872 22 1 11.1129 1.1640 -0.3387 23 1 11.6805 1.2096 2.0182 24 1 11.1438 -0.8959 0.9406 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5139 28 1 0.4863 -2.4942 -0.0092 29 1 4.0978 -4.6371 0.0079 30 1 5.4296 -2.6151 0.0091 31 1 6.4854 2.4072 0.0196 32 1 5.2299 2.1009 1.2436 33 1 6.9024 2.4409 1.7494 34 1 9.3866 1.8308 3.0747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000622850253.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:05 Heat of formation + Delta-G solvation = -45.495314 kcal Electronic energy + Delta-G solvation = -19285.971164 eV Core-core repulsion = 16183.803184 eV Total energy + Delta-G solvation = -3102.167980 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76901 -40.23552 -39.57199 -36.03397 -35.58207 -33.42191 -32.80220 -31.61710 -29.99230 -27.29459 -25.66089 -25.31265 -23.51469 -21.57789 -20.44839 -19.35516 -18.41049 -17.89614 -17.39535 -16.96618 -16.62235 -16.04784 -15.87239 -15.67344 -15.49109 -14.99799 -14.97029 -14.31389 -14.30810 -13.52134 -13.09969 -13.09370 -12.88596 -12.76337 -12.75794 -12.65538 -12.30589 -12.24369 -11.93649 -11.21361 -11.00386 -10.62418 -10.60353 -10.45911 -9.75121 -8.61535 -8.15811 -6.31900 -0.18870 0.04865 1.33891 1.39612 1.43767 1.48215 1.85854 1.95318 2.39015 2.73205 3.08615 3.25853 3.40761 3.71159 3.96505 4.01962 4.22311 4.49087 4.56761 4.64077 4.76981 4.86951 4.90756 4.97379 5.01762 5.09744 5.33390 5.51220 5.61075 5.64299 5.69881 5.89420 6.21428 6.29309 6.72951 6.76462 7.07326 7.35206 7.65459 8.89697 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.027923 B = 0.005407 C = 0.004763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.501373 B = 5176.947045 C = 5877.454685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.382 3.618 3 O -0.503 6.503 4 C -0.308 4.308 5 C 0.246 3.754 6 N -0.543 5.543 7 H 0.459 0.541 8 C 0.179 3.821 9 C -0.284 4.284 10 C 0.285 3.715 11 N -0.647 5.647 12 C 0.499 3.501 13 O -0.583 6.583 14 C 0.026 3.974 15 H 0.020 0.980 16 C -0.100 4.100 17 C -0.535 4.535 18 H 0.049 0.951 19 C 0.012 3.988 20 N -0.917 5.917 21 Si 0.971 3.029 22 H -0.276 1.276 23 H -0.268 1.268 24 H -0.268 1.268 25 H 0.116 0.884 26 H 0.076 0.924 27 H 0.131 0.869 28 H 0.258 0.742 29 H 0.222 0.778 30 H 0.107 0.893 31 H 0.011 0.989 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.000 -18.747 -2.164 31.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.262 3.738 3 O -0.380 6.380 4 C -0.318 4.318 5 C 0.109 3.891 6 N -0.147 5.147 7 H 0.303 0.697 8 C 0.048 3.952 9 C -0.310 4.310 10 C 0.127 3.873 11 N -0.382 5.382 12 C 0.290 3.710 13 O -0.465 6.465 14 C 0.006 3.994 15 H 0.038 0.962 16 C -0.158 4.158 17 C -0.573 4.573 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.556 5.556 21 Si 0.795 3.205 22 H -0.202 1.202 23 H -0.193 1.193 24 H -0.193 1.193 25 H 0.135 0.865 26 H 0.095 0.905 27 H 0.149 0.851 28 H 0.273 0.727 29 H 0.238 0.762 30 H 0.125 0.875 31 H 0.030 0.970 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.279 -17.484 -2.445 30.019 hybrid contribution 1.978 -0.069 -0.136 1.983 sum -22.302 -17.553 -2.581 28.498 Atomic orbital electron populations 1.22266 0.88766 1.06512 1.06339 1.22815 0.93356 0.86502 0.71152 1.90690 1.73537 1.35820 1.37981 1.21311 0.89676 0.97224 1.23579 1.23391 1.00520 0.82162 0.83003 1.41036 1.05417 1.10799 1.57412 0.69693 1.22111 0.83215 1.00201 0.89628 1.21677 1.01169 0.93442 1.14759 1.20727 0.94096 0.88233 0.84256 1.68320 1.06915 1.28178 1.34837 1.22184 0.87204 0.75945 0.85658 1.90476 1.78035 1.43108 1.34851 1.18739 0.94092 0.94308 0.92310 0.96180 1.21305 0.98003 0.97032 0.99503 1.21280 0.91001 1.35460 1.09528 0.93280 1.25855 1.03966 0.94272 0.94526 1.70014 1.34732 1.36502 1.14389 0.85438 0.78339 0.78754 0.78009 1.20174 1.19265 1.19280 0.86533 0.90484 0.85077 0.72683 0.76164 0.87468 0.97013 0.95411 0.91002 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.89 9.77 71.24 0.70 -1.19 16 2 C 0.38 10.55 7.22 27.87 0.20 10.75 16 3 O -0.50 -22.25 16.12 -3.17 -0.05 -22.30 16 4 C -0.31 -7.58 6.05 -18.70 -0.11 -7.70 16 5 C 0.25 1.22 10.57 84.41 0.89 2.11 16 6 N -0.54 -0.67 5.15 -193.83 -1.00 -1.67 16 7 H 0.46 -5.14 8.87 -92.71 -0.82 -5.96 16 8 C 0.18 2.16 11.09 83.42 0.93 3.09 16 9 C -0.28 -9.24 8.92 22.31 0.20 -9.04 16 10 C 0.28 11.48 6.73 41.87 0.28 11.76 16 11 N -0.65 -35.72 8.57 -301.33 -2.58 -38.30 16 12 C 0.50 31.14 5.63 88.00 0.50 31.63 16 13 O -0.58 -38.20 14.72 -4.21 -0.06 -38.26 16 14 C 0.03 1.74 2.71 -12.29 -0.03 1.71 16 15 H 0.02 1.40 8.14 -2.39 -0.02 1.38 16 16 C -0.10 -6.40 8.88 71.98 0.64 -5.76 16 17 C -0.53 -36.38 8.37 25.60 0.21 -36.17 16 18 H 0.05 3.47 6.75 -2.91 -0.02 3.45 16 19 C 0.01 0.77 5.30 84.66 0.45 1.22 16 20 N -0.92 -59.00 11.32 21.45 0.24 -58.76 16 21 Si 0.97 49.55 29.54 68.60 2.03 51.58 16 22 H -0.28 -14.01 7.11 99.48 0.71 -13.31 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 25 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.13 -0.19 6.50 -2.39 -0.02 -0.20 16 28 H 0.26 -2.59 6.38 -2.91 -0.02 -2.60 16 29 H 0.22 0.48 8.06 -2.91 -0.02 0.45 16 30 H 0.11 4.56 6.45 -2.91 -0.02 4.54 16 31 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.03 1.67 8.05 -2.39 -0.02 1.65 16 33 H 0.07 4.67 6.07 -2.39 -0.01 4.66 16 34 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 Total: -1.00 -121.92 295.99 3.74 -118.17 By element: Atomic # 1 Polarization: -13.21 SS G_CDS: 0.32 Total: -12.89 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.85 Total: 2.42 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -3.34 Total: -98.73 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -0.11 Total: -60.56 kcal Atomic # 14 Polarization: 49.55 SS G_CDS: 2.03 Total: 51.58 kcal Total: -121.92 3.74 -118.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000622850253.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.676 kcal (2) G-P(sol) polarization free energy of solvation -121.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -118.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds