Wall clock time and date at job start Mon Mar 30 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21329 * 120.00039 * 2 1 4 4 C 1.46602 * 120.00389 * 179.97438 * 2 1 3 5 5 C 1.38550 * 120.89761 * 0.26139 * 4 2 1 6 6 N 1.34136 * 120.31042 * 180.26666 * 5 4 2 7 7 H 0.96994 * 118.81431 * 179.72718 * 6 5 4 8 8 C 1.35457 * 122.38125 * 359.74720 * 6 5 4 9 9 C 1.35136 * 121.84900 * 359.97438 * 8 6 5 10 10 C 1.41310 * 119.39851 * 0.02562 * 9 8 6 11 11 N 1.34124 * 121.07247 * 180.02562 * 10 9 8 12 12 C 1.32544 * 119.99958 * 5.33188 * 11 10 9 13 13 O 1.21663 * 120.00401 * 55.42984 * 12 11 10 14 14 C 1.50703 * 119.99976 * 235.43063 * 12 11 10 15 15 H 1.09003 * 109.46624 * 300.00079 * 14 12 11 16 16 C 1.53000 * 109.47234 * 59.99288 * 14 12 11 17 17 C 1.50699 * 109.47085 * 180.02562 * 14 12 11 18 18 H 1.07994 * 120.00393 * 359.97438 * 17 14 12 19 19 C 1.37887 * 119.99730 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99873 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99874 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47080 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47351 * 119.99805 * 21 19 17 24 24 H 1.48497 * 109.47022 * 239.99915 * 21 19 17 25 25 H 1.08991 * 109.46979 * 240.00066 * 1 2 3 26 26 H 1.09000 * 109.47303 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46721 * 120.00329 * 1 2 3 28 28 H 1.08004 * 119.84754 * 359.96609 * 5 4 2 29 29 H 1.07990 * 119.07408 * 179.97438 * 8 6 5 30 30 H 1.08002 * 120.29950 * 180.02562 * 9 8 6 31 31 H 1.09011 * 109.46510 * 60.00543 * 16 14 12 32 32 H 1.08995 * 109.47631 * 300.00670 * 16 14 12 33 33 H 1.08999 * 109.47197 * 180.02562 * 16 14 12 34 34 H 0.97000 * 119.99467 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2401 -1.2696 0.0006 5 6 1.5663 -2.4802 -0.0043 6 7 2.2489 -3.6349 0.0017 7 1 1.7552 -4.4698 0.0021 8 6 3.6028 -3.6772 0.0075 9 6 4.3514 -2.5521 0.0071 10 6 3.7108 -1.2926 0.0010 11 7 4.4208 -0.1548 0.0000 12 6 5.7416 -0.1980 -0.1020 13 8 6.2610 -0.7746 -1.0390 14 6 6.6002 0.4673 0.9427 15 1 6.3732 1.5329 0.9747 16 6 6.3144 -0.1563 2.3103 17 6 8.0539 0.2740 0.5957 18 1 8.3287 -0.2759 -0.2922 19 6 9.0333 0.7984 1.4125 20 7 8.6987 1.4676 2.4941 21 14 10.8352 0.5582 0.9828 22 1 10.9442 -0.2247 -0.2744 23 1 11.4811 1.8827 0.7992 24 1 11.5128 -0.1748 2.0822 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4864 -2.4943 -0.0081 29 1 4.0978 -4.6370 0.0126 30 1 5.4296 -2.6151 0.0114 31 1 6.5414 -1.2220 2.2783 32 1 5.2630 -0.0161 2.5611 33 1 6.9351 0.3252 3.0660 34 1 9.3876 1.8368 3.0685 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000622850254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:09 Heat of formation + Delta-G solvation = -8.566733 kcal Electronic energy + Delta-G solvation = -19356.945802 eV Core-core repulsion = 16256.379165 eV Total energy + Delta-G solvation = -3100.566637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71023 -38.53693 -38.46750 -34.39977 -33.49756 -32.42281 -30.94874 -30.02013 -29.10485 -24.96803 -24.48829 -24.11200 -21.63585 -20.63828 -18.96492 -18.30881 -16.71093 -16.20185 -15.88535 -15.46037 -15.13773 -14.80361 -14.70109 -14.26831 -14.15197 -13.70284 -13.44777 -12.80760 -12.35402 -12.20828 -12.10002 -12.01006 -11.56193 -10.97025 -10.79736 -10.53586 -10.52097 -10.06238 -9.84396 -9.69116 -9.59898 -9.10749 -8.74501 -8.29542 -8.00946 -7.24044 -5.86146 -3.89675 0.75852 1.16567 2.62922 2.67583 3.34421 3.40626 3.47301 3.55968 4.02517 4.17911 4.21149 4.52825 4.59590 4.92788 5.02828 5.09418 5.30367 5.42832 5.45562 5.53795 5.67588 5.93460 6.09360 6.47946 6.66046 6.75354 6.89206 6.99822 7.19631 7.30319 7.77624 7.97178 7.98633 8.20668 8.42551 8.49549 9.17335 9.40240 9.74135 11.21354 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.005362 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.525418 B = 5221.023725 C = 5742.939828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.389 3.611 3 O -0.415 6.415 4 C -0.248 4.248 5 C 0.174 3.826 6 N -0.585 5.585 7 H 0.419 0.581 8 C 0.096 3.904 9 C -0.202 4.202 10 C 0.287 3.713 11 N -0.558 5.558 12 C 0.489 3.511 13 O -0.532 6.532 14 C 0.028 3.972 15 H 0.056 0.944 16 C -0.124 4.124 17 C -0.500 4.500 18 H 0.072 0.928 19 C 0.057 3.943 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.175 0.825 29 H 0.165 0.835 30 H 0.154 0.846 31 H 0.022 0.978 32 H 0.014 0.986 33 H 0.092 0.908 34 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.828 -14.503 -1.973 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.263 3.737 3 O -0.286 6.286 4 C -0.259 4.259 5 C 0.041 3.959 6 N -0.190 5.190 7 H 0.255 0.745 8 C -0.031 4.031 9 C -0.227 4.227 10 C 0.118 3.882 11 N -0.287 5.287 12 C 0.280 3.720 13 O -0.409 6.409 14 C 0.008 3.992 15 H 0.074 0.926 16 C -0.181 4.181 17 C -0.539 4.539 18 H 0.090 0.910 19 C -0.143 4.143 20 N -0.536 5.536 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.212 1.212 25 H 0.104 0.896 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.192 0.808 29 H 0.182 0.818 30 H 0.172 0.828 31 H 0.041 0.959 32 H 0.033 0.967 33 H 0.110 0.890 34 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.969 -13.107 -2.290 23.996 hybrid contribution 1.136 -1.058 -0.106 1.556 sum -18.832 -14.165 -2.396 23.686 Atomic orbital electron populations 1.22282 0.94718 1.05111 1.03447 1.21646 0.90289 0.87508 0.74275 1.90697 1.71388 1.33102 1.33395 1.21086 0.92395 0.93927 1.18481 1.22328 0.97733 0.84840 0.91045 1.40561 1.06376 1.08836 1.63179 0.74528 1.21528 0.82071 1.00660 0.98803 1.21986 1.02210 0.91916 1.06619 1.19703 0.91091 0.88531 0.88852 1.68612 1.09551 1.26550 1.23963 1.22638 0.85525 0.77042 0.86782 1.90587 1.76902 1.39987 1.33460 1.18830 0.93656 0.96955 0.89795 0.92616 1.21618 0.97844 0.98560 1.00122 1.21251 0.89313 1.34067 1.09252 0.91019 1.24970 0.99135 0.95192 0.95048 1.69919 1.32752 1.36795 1.14111 0.86438 0.84877 0.77804 0.78349 1.19666 1.21055 1.21158 0.89557 0.89794 0.89644 0.80786 0.81784 0.82829 0.95886 0.96663 0.88973 0.93180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.49 8.96 36.01 0.32 -1.16 16 2 C 0.39 5.50 7.22 -30.94 -0.22 5.28 16 3 O -0.41 -8.45 16.11 5.52 0.09 -8.36 16 4 C -0.25 -3.33 6.05 -102.82 -0.62 -3.96 16 5 C 0.17 1.15 10.67 -16.43 -0.18 0.97 16 6 N -0.59 -3.02 5.15 -12.61 -0.06 -3.08 16 7 H 0.42 0.11 8.87 -40.82 -0.36 -0.26 16 8 C 0.10 0.85 11.09 -17.05 -0.19 0.66 16 9 C -0.20 -3.23 8.92 -39.52 -0.35 -3.58 16 10 C 0.29 5.48 6.73 -82.11 -0.55 4.92 16 11 N -0.56 -13.83 8.57 -8.84 -0.08 -13.91 16 12 C 0.49 13.58 5.63 -11.97 -0.07 13.52 16 13 O -0.53 -15.54 14.72 5.22 0.08 -15.46 16 14 C 0.03 0.84 2.71 -92.92 -0.25 0.59 16 15 H 0.06 1.79 8.14 -51.93 -0.42 1.36 16 16 C -0.12 -3.32 8.88 37.16 0.33 -2.99 16 17 C -0.50 -15.62 8.38 -34.44 -0.29 -15.91 16 18 H 0.07 2.32 6.75 -52.49 -0.35 1.97 16 19 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 20 N -0.90 -27.41 11.32 55.43 0.63 -26.78 16 21 Si 0.90 23.13 29.54 -169.99 -5.02 18.11 16 22 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H 0.09 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 27 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.18 0.21 7.08 -52.48 -0.37 -0.16 16 29 H 0.16 0.84 8.06 -52.49 -0.42 0.41 16 30 H 0.15 2.94 6.45 -52.49 -0.34 2.61 16 31 H 0.02 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.01 0.37 8.05 -51.93 -0.42 -0.05 16 33 H 0.09 2.64 6.07 -51.93 -0.32 2.33 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 297.51 15.07 4.48 4.48 Total: -1.00 -43.67 297.51 -5.88 -49.55 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: -3.83 Total: -4.49 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.16 Total: -0.05 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.49 Total: -43.77 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: 0.17 Total: -23.83 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -5.02 Total: 18.11 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -43.67 -5.88 -49.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000622850254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.983 kcal (2) G-P(sol) polarization free energy of solvation -43.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds