Wall clock time and date at job start Mon Mar 30 2020 05:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21329 * 120.00039 * 2 1 4 4 C 1.46602 * 120.00389 * 179.97438 * 2 1 3 5 5 C 1.38550 * 120.89761 * 0.26139 * 4 2 1 6 6 N 1.34136 * 120.31042 * 180.26666 * 5 4 2 7 7 H 0.96994 * 118.81431 * 179.72718 * 6 5 4 8 8 C 1.35457 * 122.38125 * 359.74720 * 6 5 4 9 9 C 1.35136 * 121.84900 * 359.97438 * 8 6 5 10 10 C 1.41310 * 119.39851 * 0.02562 * 9 8 6 11 11 N 1.34124 * 121.07247 * 180.02562 * 10 9 8 12 12 C 1.32544 * 119.99958 * 5.33188 * 11 10 9 13 13 O 1.21663 * 120.00401 * 55.42984 * 12 11 10 14 14 C 1.50703 * 119.99976 * 235.43063 * 12 11 10 15 15 H 1.09003 * 109.46624 * 300.00079 * 14 12 11 16 16 C 1.53000 * 109.47234 * 59.99288 * 14 12 11 17 17 C 1.50699 * 109.47085 * 180.02562 * 14 12 11 18 18 H 1.07994 * 120.00393 * 359.97438 * 17 14 12 19 19 C 1.37887 * 119.99730 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99873 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99874 * 179.97438 * 19 17 14 22 22 H 1.48505 * 109.47080 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47351 * 119.99805 * 21 19 17 24 24 H 1.48497 * 109.47022 * 239.99915 * 21 19 17 25 25 H 1.08991 * 109.46979 * 240.00066 * 1 2 3 26 26 H 1.09000 * 109.47303 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46721 * 120.00329 * 1 2 3 28 28 H 1.08004 * 119.84754 * 359.96609 * 5 4 2 29 29 H 1.07990 * 119.07408 * 179.97438 * 8 6 5 30 30 H 1.08002 * 120.29950 * 180.02562 * 9 8 6 31 31 H 1.09011 * 109.46510 * 60.00543 * 16 14 12 32 32 H 1.08995 * 109.47631 * 300.00670 * 16 14 12 33 33 H 1.08999 * 109.47197 * 180.02562 * 16 14 12 34 34 H 0.97000 * 119.99467 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0507 0.0000 4 6 2.2401 -1.2696 0.0006 5 6 1.5663 -2.4802 -0.0043 6 7 2.2489 -3.6349 0.0017 7 1 1.7552 -4.4698 0.0021 8 6 3.6028 -3.6772 0.0075 9 6 4.3514 -2.5521 0.0071 10 6 3.7108 -1.2926 0.0010 11 7 4.4208 -0.1548 0.0000 12 6 5.7416 -0.1980 -0.1020 13 8 6.2610 -0.7746 -1.0390 14 6 6.6002 0.4673 0.9427 15 1 6.3732 1.5329 0.9747 16 6 6.3144 -0.1563 2.3103 17 6 8.0539 0.2740 0.5957 18 1 8.3287 -0.2759 -0.2922 19 6 9.0333 0.7984 1.4125 20 7 8.6987 1.4676 2.4941 21 14 10.8352 0.5582 0.9828 22 1 10.9442 -0.2247 -0.2744 23 1 11.4811 1.8827 0.7992 24 1 11.5128 -0.1748 2.0822 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3634 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 0.4864 -2.4943 -0.0081 29 1 4.0978 -4.6370 0.0126 30 1 5.4296 -2.6151 0.0114 31 1 6.5414 -1.2220 2.2783 32 1 5.2630 -0.0161 2.5611 33 1 6.9351 0.3252 3.0660 34 1 9.3876 1.8368 3.0685 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000622850254.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:17:09 Heat of formation + Delta-G solvation = -46.881615 kcal Electronic energy + Delta-G solvation = -19358.607260 eV Core-core repulsion = 16256.379165 eV Total energy + Delta-G solvation = -3102.228094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 262.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76625 -40.24124 -39.57502 -35.98203 -35.62323 -33.39218 -32.77984 -31.62952 -29.99597 -27.30540 -25.69965 -25.36064 -23.43393 -21.58132 -20.39046 -19.34188 -18.43434 -17.82491 -17.45023 -17.02180 -16.65722 -16.09277 -15.82561 -15.63960 -15.45703 -14.96965 -14.76909 -14.70835 -14.04054 -13.68540 -13.07816 -13.05267 -12.91611 -12.78684 -12.71543 -12.68545 -12.37895 -12.21350 -11.93614 -11.16086 -11.02978 -10.63251 -10.59654 -10.46450 -9.76217 -8.60435 -8.17449 -6.32671 -0.17959 0.05943 1.33574 1.36225 1.44542 1.51378 1.86984 1.95805 2.38995 2.74221 3.08119 3.27195 3.41974 3.72645 3.97895 4.04912 4.22353 4.47873 4.61469 4.63370 4.72073 4.86252 4.89297 4.91593 4.95927 5.09950 5.38009 5.48437 5.58898 5.66811 5.71017 5.92988 6.20754 6.30008 6.73579 6.76485 7.07690 7.34805 7.66541 8.89367 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.005362 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.525418 B = 5221.023725 C = 5742.939828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.382 3.618 3 O -0.506 6.506 4 C -0.309 4.309 5 C 0.248 3.752 6 N -0.543 5.543 7 H 0.459 0.541 8 C 0.177 3.823 9 C -0.282 4.282 10 C 0.288 3.712 11 N -0.649 5.649 12 C 0.499 3.501 13 O -0.584 6.584 14 C 0.020 3.980 15 H 0.007 0.993 16 C -0.096 4.096 17 C -0.531 4.531 18 H 0.049 0.951 19 C 0.011 3.989 20 N -0.918 5.918 21 Si 0.972 3.028 22 H -0.276 1.276 23 H -0.273 1.273 24 H -0.264 1.264 25 H 0.130 0.870 26 H 0.068 0.932 27 H 0.129 0.871 28 H 0.257 0.743 29 H 0.222 0.778 30 H 0.108 0.892 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.978 -19.661 -1.701 31.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.262 3.738 3 O -0.383 6.383 4 C -0.319 4.319 5 C 0.111 3.889 6 N -0.146 5.146 7 H 0.303 0.697 8 C 0.047 3.953 9 C -0.308 4.308 10 C 0.131 3.869 11 N -0.385 5.385 12 C 0.290 3.710 13 O -0.466 6.466 14 C -0.001 4.001 15 H 0.025 0.975 16 C -0.153 4.153 17 C -0.570 4.570 18 H 0.067 0.933 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.796 3.204 22 H -0.201 1.201 23 H -0.198 1.198 24 H -0.188 1.188 25 H 0.148 0.852 26 H 0.087 0.913 27 H 0.147 0.853 28 H 0.273 0.727 29 H 0.238 0.762 30 H 0.126 0.874 31 H 0.046 0.954 32 H 0.042 0.958 33 H 0.091 0.909 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.260 -18.402 -1.987 30.514 hybrid contribution 1.979 0.116 -0.210 1.993 sum -22.281 -18.285 -2.198 28.907 Atomic orbital electron populations 1.22302 0.88680 1.05747 1.07350 1.22837 0.93417 0.86474 0.71091 1.90691 1.73656 1.35885 1.38056 1.21304 0.89725 0.97175 1.23741 1.23344 1.00511 0.82122 0.82932 1.41028 1.05422 1.10794 1.57399 0.69707 1.22111 0.83218 1.00219 0.89766 1.21671 1.01170 0.93387 1.14553 1.20693 0.94006 0.88187 0.84056 1.68359 1.06900 1.28326 1.34961 1.22168 0.87181 0.76291 0.85311 1.90477 1.78040 1.43311 1.34738 1.18773 0.94153 0.94694 0.92455 0.97488 1.21281 0.97742 0.98158 0.98166 1.21325 0.90950 1.35410 1.09281 0.93309 1.25871 1.04026 0.94230 0.94607 1.70037 1.34586 1.36557 1.14584 0.85313 0.78541 0.78257 0.78331 1.20134 1.19786 1.18832 0.85195 0.91283 0.85272 0.72701 0.76201 0.87436 0.95369 0.95795 0.90921 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.90 8.96 71.24 0.64 -1.26 16 2 C 0.38 10.58 7.22 27.87 0.20 10.78 16 3 O -0.51 -22.58 16.11 -3.18 -0.05 -22.63 16 4 C -0.31 -7.60 6.05 -18.70 -0.11 -7.72 16 5 C 0.25 1.20 10.67 84.42 0.90 2.10 16 6 N -0.54 -0.62 5.15 -193.82 -1.00 -1.61 16 7 H 0.46 -5.18 8.87 -92.71 -0.82 -6.00 16 8 C 0.18 2.13 11.09 83.42 0.93 3.05 16 9 C -0.28 -9.10 8.92 22.31 0.20 -8.90 16 10 C 0.29 11.58 6.73 41.87 0.28 11.86 16 11 N -0.65 -35.99 8.57 -301.34 -2.58 -38.57 16 12 C 0.50 31.25 5.63 88.00 0.50 31.75 16 13 O -0.58 -38.36 14.72 -4.23 -0.06 -38.42 16 14 C 0.02 1.34 2.71 -12.29 -0.03 1.31 16 15 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 16 C -0.10 -5.63 8.88 71.98 0.64 -4.99 16 17 C -0.53 -36.26 8.38 25.60 0.21 -36.04 16 18 H 0.05 3.47 6.75 -2.91 -0.02 3.45 16 19 C 0.01 0.69 5.30 84.66 0.45 1.14 16 20 N -0.92 -59.15 11.32 21.45 0.24 -58.91 16 21 Si 0.97 49.62 29.54 68.60 2.03 51.65 16 22 H -0.28 -14.21 7.11 99.48 0.71 -13.51 16 23 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 24 H -0.26 -12.47 7.11 99.48 0.71 -11.77 16 25 H 0.13 0.24 8.10 -2.39 -0.02 0.22 16 26 H 0.07 0.98 8.12 -2.39 -0.02 0.96 16 27 H 0.13 0.23 8.09 -2.39 -0.02 0.22 16 28 H 0.26 -2.61 7.08 -2.91 -0.02 -2.63 16 29 H 0.22 0.46 8.06 -2.92 -0.02 0.44 16 30 H 0.11 4.56 6.45 -2.91 -0.02 4.54 16 31 H 0.03 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.02 1.29 8.05 -2.39 -0.02 1.27 16 33 H 0.07 4.49 6.07 -2.39 -0.01 4.47 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -122.96 297.51 3.69 -119.27 By element: Atomic # 1 Polarization: -14.17 SS G_CDS: 0.31 Total: -13.85 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: 4.80 Total: 3.07 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -3.34 Total: -99.09 kcal Atomic # 8 Polarization: -60.93 SS G_CDS: -0.11 Total: -61.05 kcal Atomic # 14 Polarization: 49.62 SS G_CDS: 2.03 Total: 51.65 kcal Total: -122.96 3.69 -119.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000622850254.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.392 kcal (2) G-P(sol) polarization free energy of solvation -122.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -119.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds