Wall clock time and date at job start Mon Mar 30 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47278 * 2 1 4 4 C 1.50705 * 109.46919 * 239.99763 * 2 1 3 5 5 H 1.07998 * 120.00083 * 240.00404 * 4 2 1 6 6 C 1.37873 * 119.99888 * 60.00146 * 4 2 1 7 7 N 1.31519 * 119.99823 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47209 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46966 * 300.00158 * 8 6 4 11 11 H 1.48497 * 109.47062 * 59.99823 * 8 6 4 12 12 N 1.46508 * 109.47233 * 120.00383 * 2 1 3 13 13 S 1.65604 * 119.99447 * 264.14888 * 12 2 1 14 14 O 1.42095 * 104.27734 * 50.70511 * 13 12 2 15 15 O 1.42101 * 104.27217 * 178.55657 * 13 12 2 16 16 C 1.81394 * 104.44792 * 294.62721 * 13 12 2 17 17 C 1.53112 * 109.52729 * 300.46718 * 16 13 12 18 18 C 1.53036 * 109.28138 * 182.43899 * 17 16 13 19 19 N 1.46848 * 109.51881 * 59.18300 * 18 17 16 20 20 C 1.46841 * 111.19953 * 298.25691 * 19 18 17 21 21 C 1.53039 * 109.52405 * 61.74282 * 20 19 18 22 22 H 1.09005 * 109.46770 * 304.31903 * 1 2 3 23 23 H 1.08989 * 109.47092 * 64.32166 * 1 2 3 24 24 H 1.08997 * 109.47136 * 184.32456 * 1 2 3 25 25 H 0.96998 * 119.99970 * 180.02562 * 7 6 4 26 26 H 0.97001 * 120.00389 * 84.14487 * 12 2 1 27 27 H 1.08998 * 109.52105 * 60.66629 * 16 13 12 28 28 H 1.09004 * 109.50873 * 302.38742 * 17 16 13 29 29 H 1.09007 * 109.50139 * 62.50276 * 17 16 13 30 30 H 1.08996 * 109.46311 * 299.16547 * 18 17 16 31 31 H 1.09003 * 109.46241 * 179.19840 * 18 17 16 32 32 H 1.00903 * 111.00173 * 62.36002 * 19 18 17 33 33 H 1.09002 * 109.46472 * 301.72692 * 20 19 18 34 34 H 1.09002 * 109.45419 * 181.75375 * 20 19 18 35 35 H 1.08999 * 109.50284 * 180.88077 * 21 20 19 36 36 H 1.09001 * 109.50137 * 60.76148 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3223 -1.1196 -4.0080 9 1 1.8277 -0.4193 -5.2204 10 1 3.8074 -1.1191 -4.0077 11 1 1.8279 -2.5199 -4.0081 12 7 2.0184 -0.6907 1.1962 13 16 2.4322 0.1789 2.5434 14 8 1.3104 1.0194 2.7762 15 8 2.8185 -0.8065 3.4915 16 6 3.8667 1.1607 2.0253 17 6 4.9900 0.2250 1.5703 18 6 6.2181 1.0562 1.1922 19 7 6.6532 1.8443 2.3524 20 6 5.6082 2.7840 2.7780 21 6 4.3618 2.0044 3.2033 22 1 -0.3633 0.5794 0.8488 23 1 -0.3633 0.4453 -0.9261 24 1 -0.3633 -1.0247 0.0775 25 1 0.7089 1.1614 -3.4843 26 1 2.0993 -1.6573 1.1991 27 1 3.5815 1.8162 1.2024 28 1 5.2472 -0.4563 2.3813 29 1 4.6579 -0.3480 0.7045 30 1 5.9640 1.7273 0.3718 31 1 7.0245 0.3919 0.8813 32 1 6.9314 1.2436 3.1139 33 1 5.3568 3.4471 1.9502 34 1 5.9716 3.3746 3.6190 35 1 3.5809 2.7027 3.5044 36 1 4.6091 1.3512 4.0402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687248644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:37 Heat of formation + Delta-G solvation = -87.507531 kcal Electronic energy + Delta-G solvation = -19128.857762 eV Core-core repulsion = 16160.311947 eV Total energy + Delta-G solvation = -2968.545815 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.66315 -36.61484 -35.53964 -35.36693 -32.28309 -31.99289 -30.88801 -28.27041 -25.26064 -24.06623 -23.03175 -21.01140 -20.67134 -18.66894 -17.49549 -16.67889 -16.16763 -15.76724 -15.24254 -14.74200 -14.65009 -14.35918 -13.60399 -13.46056 -13.36691 -12.67043 -12.33428 -12.23536 -12.12230 -11.69705 -11.64063 -11.51576 -11.32497 -11.16164 -11.01753 -10.79472 -10.64205 -10.61228 -10.41017 -10.30272 -10.13228 -9.23614 -8.66221 -8.44685 -8.25786 -6.18907 -4.28529 0.81789 3.20989 3.27155 3.27591 3.41776 4.17396 4.27105 4.30901 4.41457 4.58363 4.91230 5.06863 5.12197 5.14718 5.30600 5.36426 5.59309 5.62371 5.73286 5.90387 5.95609 6.06051 6.15309 6.28117 6.78145 6.93203 7.05908 7.07390 7.30850 7.53115 7.66943 7.78851 7.99653 8.23808 8.75485 9.38726 10.86117 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.007786 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.424979 B = 3595.540146 C = 4391.153648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.276 3.724 3 H 0.037 0.963 4 C -0.528 4.528 5 H 0.064 0.936 6 C 0.065 3.935 7 N -0.886 5.886 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.276 1.276 11 H -0.276 1.276 12 N -1.102 6.102 13 S 2.608 3.392 14 O -0.963 6.963 15 O -0.982 6.982 16 C -0.590 4.590 17 C -0.138 4.138 18 C 0.064 3.936 19 N -0.686 5.686 20 C 0.066 3.934 21 C -0.145 4.145 22 H 0.025 0.975 23 H 0.092 0.908 24 H 0.030 0.970 25 H 0.266 0.734 26 H 0.408 0.592 27 H 0.140 0.860 28 H 0.073 0.927 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.339 0.661 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.313 1.576 7.431 11.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.172 3.828 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.082 0.918 6 C -0.138 4.138 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.212 1.212 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.862 5.862 13 S 2.701 3.299 14 O -0.953 6.953 15 O -0.972 6.972 16 C -0.698 4.698 17 C -0.178 4.178 18 C -0.067 4.067 19 N -0.314 5.314 20 C -0.065 4.065 21 C -0.186 4.186 22 H 0.044 0.956 23 H 0.110 0.890 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.241 0.759 27 H 0.158 0.842 28 H 0.091 0.909 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.156 0.844 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.098 2.366 7.729 11.442 hybrid contribution -0.039 -1.229 -1.060 1.623 sum 8.059 1.137 6.669 10.522 Atomic orbital electron populations 1.22227 0.98207 0.99408 1.01986 1.18478 0.91571 0.91769 0.80981 0.94546 1.21269 1.32179 1.13296 0.90017 0.91796 1.24930 0.94808 0.94983 0.99100 1.69868 1.35852 1.22528 1.24112 0.86541 0.79151 0.79747 0.81866 1.21176 1.20158 1.20154 1.55564 1.80736 1.18287 1.31573 1.04944 0.76075 0.75063 0.73862 1.93570 1.46699 1.70455 1.84580 1.93508 1.85063 1.57820 1.60826 1.30495 1.18191 1.12602 1.08556 1.21986 0.95390 0.97267 1.03201 1.21965 0.95077 0.95869 0.93757 1.60698 1.38550 1.22073 1.10068 1.21935 0.88761 0.94870 1.00903 1.22068 1.01322 0.99642 0.95584 0.95572 0.88961 0.95068 0.92447 0.75885 0.84209 0.90853 0.88472 0.90258 0.90247 0.84365 0.90345 0.90327 0.89995 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.84 9.35 37.16 0.35 -3.49 16 2 C 0.28 6.44 2.66 -69.08 -0.18 6.26 16 3 H 0.04 0.89 7.20 -51.93 -0.37 0.51 16 4 C -0.53 -13.12 8.76 -34.44 -0.30 -13.42 16 5 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 6 C 0.07 1.66 5.29 -17.82 -0.09 1.57 16 7 N -0.89 -23.64 11.30 55.43 0.63 -23.02 16 8 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 9 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 N -1.10 -21.73 5.08 -5.88 -0.03 -21.76 16 13 S 2.61 47.59 4.82 -107.50 -0.52 47.07 16 14 O -0.96 -20.71 17.26 -57.54 -0.99 -21.71 16 15 O -0.98 -19.16 17.92 -57.54 -1.03 -20.19 16 16 C -0.59 -8.78 2.71 -26.61 -0.07 -8.85 16 17 C -0.14 -1.90 5.23 -26.65 -0.14 -2.04 16 18 C 0.06 0.78 6.55 -3.83 -0.03 0.76 16 19 N -0.69 -7.78 6.87 -113.82 -0.78 -8.56 16 20 C 0.07 0.73 6.55 -3.84 -0.03 0.71 16 21 C -0.15 -1.82 5.37 -26.65 -0.14 -1.96 16 22 H 0.03 0.61 7.59 -51.93 -0.39 0.21 16 23 H 0.09 2.39 5.97 -51.94 -0.31 2.08 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 26 H 0.41 7.47 8.80 -34.48 -0.30 7.17 16 27 H 0.14 2.16 7.50 -51.93 -0.39 1.77 16 28 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 29 H 0.10 1.44 7.99 -51.92 -0.41 1.02 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.34 3.39 8.86 -39.29 -0.35 3.04 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -30.15 301.66 -9.30 -39.45 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: -5.46 Total: 9.78 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -0.64 Total: -20.47 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.19 Total: -53.34 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -2.02 Total: -41.90 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 47.59 SS G_CDS: -0.52 Total: 47.07 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.15 -9.30 -39.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687248644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.058 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds