Wall clock time and date at job start Mon Mar 30 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47278 * 2 1 4 4 C 1.50705 * 109.46919 * 239.99763 * 2 1 3 5 5 H 1.07998 * 120.00083 * 240.00404 * 4 2 1 6 6 C 1.37873 * 119.99888 * 60.00146 * 4 2 1 7 7 N 1.31519 * 119.99823 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47209 * 180.02562 * 8 6 4 10 10 H 1.48503 * 109.46966 * 300.00158 * 8 6 4 11 11 H 1.48497 * 109.47062 * 59.99823 * 8 6 4 12 12 N 1.46508 * 109.47233 * 120.00383 * 2 1 3 13 13 S 1.65604 * 119.99447 * 264.14888 * 12 2 1 14 14 O 1.42095 * 104.27734 * 50.70511 * 13 12 2 15 15 O 1.42101 * 104.27217 * 178.55657 * 13 12 2 16 16 C 1.81394 * 104.44792 * 294.62721 * 13 12 2 17 17 C 1.53112 * 109.52729 * 300.46718 * 16 13 12 18 18 C 1.53036 * 109.28138 * 182.43899 * 17 16 13 19 19 N 1.46848 * 109.51881 * 59.18300 * 18 17 16 20 20 C 1.46841 * 111.19953 * 298.25691 * 19 18 17 21 21 C 1.53039 * 109.52405 * 61.74282 * 20 19 18 22 22 H 1.09005 * 109.46770 * 304.31903 * 1 2 3 23 23 H 1.08989 * 109.47092 * 64.32166 * 1 2 3 24 24 H 1.08997 * 109.47136 * 184.32456 * 1 2 3 25 25 H 0.96998 * 119.99970 * 180.02562 * 7 6 4 26 26 H 0.97001 * 120.00389 * 84.14487 * 12 2 1 27 27 H 1.08998 * 109.52105 * 60.66629 * 16 13 12 28 28 H 1.09004 * 109.50873 * 302.38742 * 17 16 13 29 29 H 1.09007 * 109.50139 * 62.50276 * 17 16 13 30 30 H 1.08996 * 109.46311 * 299.16547 * 18 17 16 31 31 H 1.09003 * 109.46241 * 179.19840 * 18 17 16 32 32 H 1.00903 * 111.00173 * 62.36002 * 19 18 17 33 33 H 1.09002 * 109.46472 * 301.72692 * 20 19 18 34 34 H 1.09002 * 109.45419 * 181.75375 * 20 19 18 35 35 H 1.08999 * 109.50284 * 180.88077 * 21 20 19 36 36 H 1.09001 * 109.50137 * 60.76148 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8302 -2.6033 8 14 2.3223 -1.1196 -4.0080 9 1 1.8277 -0.4193 -5.2204 10 1 3.8074 -1.1191 -4.0077 11 1 1.8279 -2.5199 -4.0081 12 7 2.0184 -0.6907 1.1962 13 16 2.4322 0.1789 2.5434 14 8 1.3104 1.0194 2.7762 15 8 2.8185 -0.8065 3.4915 16 6 3.8667 1.1607 2.0253 17 6 4.9900 0.2250 1.5703 18 6 6.2181 1.0562 1.1922 19 7 6.6532 1.8443 2.3524 20 6 5.6082 2.7840 2.7780 21 6 4.3618 2.0044 3.2033 22 1 -0.3633 0.5794 0.8488 23 1 -0.3633 0.4453 -0.9261 24 1 -0.3633 -1.0247 0.0775 25 1 0.7089 1.1614 -3.4843 26 1 2.0993 -1.6573 1.1991 27 1 3.5815 1.8162 1.2024 28 1 5.2472 -0.4563 2.3813 29 1 4.6579 -0.3480 0.7045 30 1 5.9640 1.7273 0.3718 31 1 7.0245 0.3919 0.8813 32 1 6.9314 1.2436 3.1139 33 1 5.3568 3.4471 1.9502 34 1 5.9716 3.3746 3.6190 35 1 3.5809 2.7027 3.5044 36 1 4.6091 1.3512 4.0402 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687248644.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:37 Heat of formation + Delta-G solvation = -111.483545 kcal Electronic energy + Delta-G solvation = -19129.897440 eV Core-core repulsion = 16160.311947 eV Total energy + Delta-G solvation = -2969.585493 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68095 -38.19354 -37.27898 -36.98581 -34.13187 -33.07286 -31.89809 -30.09617 -27.23694 -25.13740 -24.02879 -22.84079 -21.77798 -20.16017 -19.17009 -18.03417 -17.80005 -17.19726 -16.81683 -16.24147 -15.69549 -15.45335 -15.25076 -14.63761 -14.57067 -14.38730 -14.02413 -13.54778 -13.30874 -13.26993 -13.14643 -13.11615 -12.97036 -12.80830 -12.39574 -12.30230 -12.23900 -11.99522 -11.89316 -11.66010 -11.63511 -11.09347 -10.56768 -10.06956 -9.35158 -8.13221 -6.28492 -0.64186 1.47294 1.48609 1.55509 1.88242 2.44546 2.79196 3.14633 3.16825 3.36663 3.42676 3.67066 3.99451 4.07311 4.31457 4.36665 4.48396 4.53226 4.64435 4.80087 4.85403 4.89221 4.97227 5.03988 5.09696 5.14354 5.15995 5.58534 5.71868 6.00577 6.01268 6.08780 6.42001 6.50139 6.83305 7.42069 8.91575 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.020323 B = 0.007786 C = 0.006375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.424979 B = 3595.540146 C = 4391.153648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.281 3.719 3 H 0.024 0.976 4 C -0.536 4.536 5 H 0.071 0.929 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.960 3.040 9 H -0.289 1.289 10 H -0.267 1.267 11 H -0.274 1.274 12 N -1.104 6.104 13 S 2.609 3.391 14 O -1.002 7.002 15 O -0.994 6.994 16 C -0.567 4.567 17 C -0.140 4.140 18 C 0.068 3.932 19 N -0.685 5.685 20 C 0.069 3.931 21 C -0.151 4.151 22 H 0.023 0.977 23 H 0.072 0.928 24 H 0.034 0.966 25 H 0.265 0.735 26 H 0.413 0.587 27 H 0.134 0.866 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.350 0.650 33 H 0.073 0.927 34 H 0.105 0.895 35 H 0.087 0.913 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.326 1.367 7.651 12.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.176 3.824 3 H 0.042 0.958 4 C -0.575 4.575 5 H 0.090 0.910 6 C -0.181 4.181 7 N -0.554 5.554 8 Si 0.785 3.215 9 H -0.214 1.214 10 H -0.192 1.192 11 H -0.199 1.199 12 N -0.862 5.862 13 S 2.707 3.293 14 O -0.992 6.992 15 O -0.984 6.984 16 C -0.680 4.680 17 C -0.180 4.180 18 C -0.063 4.063 19 N -0.313 5.313 20 C -0.063 4.063 21 C -0.192 4.192 22 H 0.042 0.958 23 H 0.091 0.909 24 H 0.053 0.947 25 H 0.074 0.926 26 H 0.247 0.753 27 H 0.152 0.848 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.169 0.831 33 H 0.091 0.909 34 H 0.123 0.877 35 H 0.106 0.894 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 10.080 2.111 7.979 13.028 hybrid contribution -0.624 -1.135 -1.060 1.674 sum 9.456 0.976 6.919 11.757 Atomic orbital electron populations 1.22169 0.99196 0.99314 1.00803 1.18202 0.90818 0.91413 0.81973 0.95789 1.21567 1.31938 1.13433 0.90582 0.91048 1.25674 0.95018 0.95599 1.01851 1.69991 1.36995 1.23852 1.24584 0.85582 0.78981 0.78514 0.78375 1.21428 1.19163 1.19897 1.55376 1.81472 1.18745 1.30641 1.04827 0.76529 0.74724 0.73216 1.93517 1.49682 1.70910 1.85058 1.93484 1.85299 1.58604 1.61055 1.30259 1.16144 1.12172 1.09450 1.22080 0.95509 0.97308 1.03122 1.21951 0.94690 0.95767 0.93915 1.60686 1.38241 1.22132 1.10262 1.22005 0.87849 0.94685 1.01712 1.22255 1.02359 0.99816 0.94726 0.95816 0.90885 0.94692 0.92570 0.75279 0.84755 0.89748 0.89688 0.91297 0.88519 0.83144 0.90868 0.87704 0.89420 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.65 9.35 71.98 0.67 -6.97 16 2 C 0.28 13.25 2.66 44.24 0.12 13.37 16 3 H 0.02 1.20 7.20 -2.39 -0.02 1.18 16 4 C -0.54 -26.46 8.76 25.60 0.22 -26.23 16 5 H 0.07 3.34 7.81 -2.91 -0.02 3.32 16 6 C 0.02 0.96 5.29 84.65 0.45 1.41 16 7 N -0.92 -49.29 11.30 21.45 0.24 -49.05 16 8 Si 0.96 40.26 29.54 68.60 2.03 42.28 16 9 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 N -1.10 -43.57 5.08 -172.51 -0.88 -44.44 16 13 S 2.61 94.63 4.82 -56.49 -0.27 94.36 16 14 O -1.00 -43.60 17.26 -127.65 -2.20 -45.81 16 15 O -0.99 -38.00 17.92 -127.65 -2.29 -40.29 16 16 C -0.57 -16.24 2.71 30.67 0.08 -16.15 16 17 C -0.14 -3.59 5.23 30.64 0.16 -3.42 16 18 C 0.07 1.49 6.55 86.33 0.57 2.06 16 19 N -0.68 -13.40 6.87 -514.01 -3.53 -16.93 16 20 C 0.07 1.32 6.55 86.33 0.57 1.89 16 21 C -0.15 -3.44 5.37 30.65 0.16 -3.27 16 22 H 0.02 1.12 7.59 -2.38 -0.02 1.10 16 23 H 0.07 3.88 5.97 -2.39 -0.01 3.87 16 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 26 H 0.41 15.07 8.80 -96.74 -0.85 14.22 16 27 H 0.13 4.09 7.50 -2.39 -0.02 4.07 16 28 H 0.08 1.99 8.05 -2.39 -0.02 1.97 16 29 H 0.08 2.41 7.99 -2.38 -0.02 2.39 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 1.82 8.14 -2.39 -0.02 1.81 16 32 H 0.35 5.74 8.86 -89.69 -0.79 4.95 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -63.09 301.66 -4.46 -67.55 By element: Atomic # 1 Polarization: 30.22 SS G_CDS: -0.56 Total: 29.66 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 3.00 Total: -37.33 kcal Atomic # 7 Polarization: -106.26 SS G_CDS: -4.16 Total: -110.42 kcal Atomic # 8 Polarization: -81.61 SS G_CDS: -4.49 Total: -86.10 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: 94.63 SS G_CDS: -0.27 Total: 94.36 kcal Total: -63.09 -4.46 -67.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687248644.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.934 kcal (2) G-P(sol) polarization free energy of solvation -63.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds