Wall clock time and date at job start Mon Mar 30 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47193 * 2 1 4 4 C 1.50701 * 109.46975 * 120.00301 * 2 1 3 5 5 H 1.08004 * 119.99796 * 114.32387 * 4 2 1 6 6 C 1.37877 * 120.00056 * 294.32927 * 4 2 1 7 7 N 1.31508 * 120.00067 * 155.36753 * 6 4 2 8 8 Si 1.86795 * 119.99689 * 335.64261 * 6 4 2 9 9 H 1.48501 * 109.46974 * 179.72356 * 8 6 4 10 10 H 1.48503 * 109.47522 * 299.72301 * 8 6 4 11 11 H 1.48498 * 109.47260 * 59.73010 * 8 6 4 12 12 N 1.46508 * 109.47193 * 240.00352 * 2 1 3 13 13 S 1.65598 * 119.99777 * 95.77251 * 12 2 1 14 14 O 1.42095 * 104.27643 * 52.00333 * 13 12 2 15 15 O 1.42104 * 104.27374 * 179.85672 * 13 12 2 16 16 C 1.81393 * 104.45019 * 295.92578 * 13 12 2 17 17 C 1.53119 * 109.52451 * 298.79634 * 16 13 12 18 18 C 1.53044 * 109.27673 * 182.43946 * 17 16 13 19 19 N 1.46845 * 109.52097 * 59.18116 * 18 17 16 20 20 C 1.46842 * 111.20076 * 298.25335 * 19 18 17 21 21 C 1.53036 * 109.51940 * 61.74478 * 20 19 18 22 22 H 1.08990 * 109.47117 * 293.54265 * 1 2 3 23 23 H 1.09000 * 109.46851 * 53.54432 * 1 2 3 24 24 H 1.09001 * 109.47132 * 173.53968 * 1 2 3 25 25 H 0.97008 * 119.99757 * 355.23685 * 7 6 4 26 26 H 0.97001 * 119.99657 * 275.77803 * 12 2 1 27 27 H 1.09000 * 109.52629 * 58.98711 * 16 13 12 28 28 H 1.08992 * 109.50518 * 302.38005 * 17 16 13 29 29 H 1.08996 * 109.50204 * 62.50601 * 17 16 13 30 30 H 1.08996 * 109.46398 * 299.16481 * 18 17 16 31 31 H 1.08996 * 109.46302 * 179.19483 * 18 17 16 32 32 H 1.00903 * 111.00365 * 62.35723 * 19 18 17 33 33 H 1.08999 * 109.46360 * 301.72940 * 20 19 18 34 34 H 1.09003 * 109.45661 * 181.75485 * 20 19 18 35 35 H 1.09008 * 109.50289 * 180.88163 * 21 20 19 36 36 H 1.09004 * 109.50775 * 60.76568 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5755 -1.6390 1.1339 6 6 1.7983 -0.1753 2.4794 7 7 1.7788 -0.9571 3.5366 8 14 1.5013 1.6592 2.6686 9 1 1.2701 1.9781 4.1004 10 1 2.6887 2.4059 2.1807 11 1 0.3091 2.0521 1.8753 12 7 2.0184 -0.6906 -1.1963 13 16 2.4304 0.1790 -2.5440 14 8 3.3309 1.1668 -2.0620 15 8 2.8530 -0.8038 -3.4794 16 6 0.8758 0.9431 -3.0824 17 6 -0.1391 -0.1502 -3.4278 18 6 -1.4271 0.4994 -3.9389 19 7 -1.1301 1.3096 -5.1271 20 6 -0.1938 2.3952 -4.8091 21 6 1.1309 1.8023 -4.3239 22 1 -0.3633 0.4104 0.9420 23 1 -0.3633 0.6106 -0.8266 24 1 -0.3633 -1.0211 -0.1156 25 1 1.8600 -1.9179 3.4309 26 1 2.1003 -1.6571 -1.1988 27 1 0.4807 1.5683 -2.2817 28 1 0.2732 -0.7983 -4.2009 29 1 -0.3573 -0.7387 -2.5367 30 1 -1.8463 1.1367 -3.1603 31 1 -2.1467 -0.2767 -4.1992 32 1 -0.7762 0.7350 -5.8773 33 1 -0.6188 3.0236 -4.0264 34 1 -0.0177 2.9958 -5.7015 35 1 1.8203 2.6085 -4.0730 36 1 1.5634 1.1847 -5.1112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687248645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:40 Heat of formation + Delta-G solvation = -84.977652 kcal Electronic energy + Delta-G solvation = -19212.688900 eV Core-core repulsion = 16244.252789 eV Total energy + Delta-G solvation = -2968.436111 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.87584 -36.75497 -35.76369 -35.54573 -32.41686 -32.15668 -31.07054 -29.02095 -24.95376 -24.21392 -23.20045 -20.88402 -20.76316 -18.90533 -17.98431 -17.03791 -16.69192 -15.94060 -15.33065 -14.93535 -14.56534 -14.42995 -13.61553 -13.58157 -13.45970 -13.14301 -12.56305 -12.54713 -12.37968 -12.06311 -11.74217 -11.69138 -11.63189 -11.47889 -11.13027 -10.97017 -10.82908 -10.55045 -10.52596 -10.24895 -9.89904 -9.33968 -8.69854 -8.51903 -8.31380 -6.61098 -4.20706 0.63875 3.23033 3.29116 3.41429 3.55005 4.03371 4.11077 4.20775 4.39504 4.40637 4.75536 4.89670 4.95117 5.06019 5.13017 5.17244 5.39742 5.46579 5.55519 5.66699 5.76380 5.79828 5.90784 5.96344 6.19886 6.30597 6.47211 6.76086 7.02054 7.14033 7.14844 7.65740 7.95762 8.26015 8.77304 9.44087 10.76130 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.007216 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.274992 B = 3879.382235 C = 4195.600521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.247 3.753 3 H 0.038 0.962 4 C -0.613 4.613 5 H 0.066 0.934 6 C 0.043 3.957 7 N -0.888 5.888 8 Si 1.025 2.975 9 H -0.281 1.281 10 H -0.276 1.276 11 H -0.275 1.275 12 N -1.093 6.093 13 S 2.604 3.396 14 O -0.959 6.959 15 O -0.976 6.976 16 C -0.596 4.596 17 C -0.141 4.141 18 C 0.064 3.936 19 N -0.685 5.685 20 C 0.066 3.934 21 C -0.145 4.145 22 H 0.063 0.937 23 H 0.026 0.974 24 H 0.053 0.947 25 H 0.272 0.728 26 H 0.411 0.589 27 H 0.139 0.861 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.341 0.659 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 4.514 -15.042 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.140 3.860 3 H 0.055 0.945 4 C -0.652 4.652 5 H 0.084 0.916 6 C -0.165 4.165 7 N -0.520 5.520 8 Si 0.852 3.148 9 H -0.206 1.206 10 H -0.202 1.202 11 H -0.202 1.202 12 N -0.852 5.852 13 S 2.696 3.304 14 O -0.949 6.949 15 O -0.966 6.966 16 C -0.704 4.704 17 C -0.181 4.181 18 C -0.067 4.067 19 N -0.313 5.313 20 C -0.065 4.065 21 C -0.186 4.186 22 H 0.082 0.918 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.246 0.754 27 H 0.157 0.843 28 H 0.096 0.904 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.423 6.369 -14.201 16.837 hybrid contribution 0.540 -2.020 -0.759 2.225 sum -5.883 4.349 -14.961 16.654 Atomic orbital electron populations 1.22751 0.99170 1.00757 1.00208 1.18825 0.90043 0.93088 0.84013 0.94484 1.21952 1.41640 1.11247 0.90375 0.91613 1.25652 0.93139 1.05811 0.91872 1.70850 1.42738 1.06367 1.32084 0.84316 0.77638 0.76164 0.76697 1.20591 1.20226 1.20154 1.55329 1.83749 1.19041 1.27128 1.05131 0.76565 0.74919 0.73795 1.93586 1.59245 1.62893 1.79145 1.93523 1.80654 1.58466 1.63980 1.30650 1.22269 1.09604 1.07855 1.22055 0.96400 0.96010 1.03633 1.21966 0.95302 0.96637 0.92746 1.60683 1.46790 1.14777 1.09084 1.21942 0.89226 0.94032 1.01263 1.22074 1.01322 0.99792 0.95419 0.91817 0.95519 0.92751 0.91826 0.75448 0.84323 0.90420 0.89049 0.90430 0.90146 0.84168 0.90372 0.90138 0.89769 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.24 8.40 37.16 0.31 -2.93 16 2 C 0.25 5.46 2.38 -69.08 -0.16 5.30 16 3 H 0.04 0.86 6.07 -51.93 -0.32 0.54 16 4 C -0.61 -16.38 8.96 -34.44 -0.31 -16.69 16 5 H 0.07 1.88 8.06 -52.48 -0.42 1.46 16 6 C 0.04 1.19 5.18 -17.82 -0.09 1.10 16 7 N -0.89 -25.99 13.70 55.43 0.76 -25.23 16 8 Si 1.03 23.97 26.49 -169.99 -4.50 19.47 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -5.76 6.23 56.52 0.35 -5.40 16 12 N -1.09 -21.13 5.18 -5.88 -0.03 -21.16 16 13 S 2.60 46.01 4.87 -107.50 -0.52 45.49 16 14 O -0.96 -20.58 17.43 -57.54 -1.00 -21.58 16 15 O -0.98 -18.60 17.86 -57.54 -1.03 -19.63 16 16 C -0.60 -7.86 2.24 -26.61 -0.06 -7.92 16 17 C -0.14 -1.64 4.90 -26.65 -0.13 -1.77 16 18 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 19 N -0.69 -6.65 6.87 -113.82 -0.78 -7.43 16 20 C 0.07 0.63 6.55 -3.84 -0.03 0.61 16 21 C -0.15 -1.62 5.37 -26.65 -0.14 -1.76 16 22 H 0.06 1.30 5.60 -51.93 -0.29 1.01 16 23 H 0.03 0.41 5.26 -51.93 -0.27 0.13 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 26 H 0.41 7.57 8.80 -34.47 -0.30 7.26 16 27 H 0.14 1.79 6.72 -51.92 -0.35 1.44 16 28 H 0.08 0.88 8.01 -51.93 -0.42 0.46 16 29 H 0.09 1.09 6.77 -51.93 -0.35 0.74 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.34 2.91 8.86 -39.29 -0.35 2.57 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 293.24 15.07 4.42 4.42 Total: -1.00 -32.33 293.24 -8.56 -40.89 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.23 Total: 8.22 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: -0.64 Total: -23.44 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -0.05 Total: -53.83 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -2.03 Total: -41.21 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -4.50 Total: 19.47 kcal Atomic # 16 Polarization: 46.01 SS G_CDS: -0.52 Total: 45.49 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.33 -8.56 -40.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687248645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.092 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds