Wall clock time and date at job start Mon Mar 30 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47193 * 2 1 4 4 C 1.50701 * 109.46975 * 120.00301 * 2 1 3 5 5 H 1.08004 * 119.99796 * 114.32387 * 4 2 1 6 6 C 1.37877 * 120.00056 * 294.32927 * 4 2 1 7 7 N 1.31508 * 120.00067 * 155.36753 * 6 4 2 8 8 Si 1.86795 * 119.99689 * 335.64261 * 6 4 2 9 9 H 1.48501 * 109.46974 * 179.72356 * 8 6 4 10 10 H 1.48503 * 109.47522 * 299.72301 * 8 6 4 11 11 H 1.48498 * 109.47260 * 59.73010 * 8 6 4 12 12 N 1.46508 * 109.47193 * 240.00352 * 2 1 3 13 13 S 1.65598 * 119.99777 * 95.77251 * 12 2 1 14 14 O 1.42095 * 104.27643 * 52.00333 * 13 12 2 15 15 O 1.42104 * 104.27374 * 179.85672 * 13 12 2 16 16 C 1.81393 * 104.45019 * 295.92578 * 13 12 2 17 17 C 1.53119 * 109.52451 * 298.79634 * 16 13 12 18 18 C 1.53044 * 109.27673 * 182.43946 * 17 16 13 19 19 N 1.46845 * 109.52097 * 59.18116 * 18 17 16 20 20 C 1.46842 * 111.20076 * 298.25335 * 19 18 17 21 21 C 1.53036 * 109.51940 * 61.74478 * 20 19 18 22 22 H 1.08990 * 109.47117 * 293.54265 * 1 2 3 23 23 H 1.09000 * 109.46851 * 53.54432 * 1 2 3 24 24 H 1.09001 * 109.47132 * 173.53968 * 1 2 3 25 25 H 0.97008 * 119.99757 * 355.23685 * 7 6 4 26 26 H 0.97001 * 119.99657 * 275.77803 * 12 2 1 27 27 H 1.09000 * 109.52629 * 58.98711 * 16 13 12 28 28 H 1.08992 * 109.50518 * 302.38005 * 17 16 13 29 29 H 1.08996 * 109.50204 * 62.50601 * 17 16 13 30 30 H 1.08996 * 109.46398 * 299.16481 * 18 17 16 31 31 H 1.08996 * 109.46302 * 179.19483 * 18 17 16 32 32 H 1.00903 * 111.00365 * 62.35723 * 19 18 17 33 33 H 1.08999 * 109.46360 * 301.72940 * 20 19 18 34 34 H 1.09003 * 109.45661 * 181.75485 * 20 19 18 35 35 H 1.09008 * 109.50289 * 180.88163 * 21 20 19 36 36 H 1.09004 * 109.50775 * 60.76568 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5755 -1.6390 1.1339 6 6 1.7983 -0.1753 2.4794 7 7 1.7788 -0.9571 3.5366 8 14 1.5013 1.6592 2.6686 9 1 1.2701 1.9781 4.1004 10 1 2.6887 2.4059 2.1807 11 1 0.3091 2.0521 1.8753 12 7 2.0184 -0.6906 -1.1963 13 16 2.4304 0.1790 -2.5440 14 8 3.3309 1.1668 -2.0620 15 8 2.8530 -0.8038 -3.4794 16 6 0.8758 0.9431 -3.0824 17 6 -0.1391 -0.1502 -3.4278 18 6 -1.4271 0.4994 -3.9389 19 7 -1.1301 1.3096 -5.1271 20 6 -0.1938 2.3952 -4.8091 21 6 1.1309 1.8023 -4.3239 22 1 -0.3633 0.4104 0.9420 23 1 -0.3633 0.6106 -0.8266 24 1 -0.3633 -1.0211 -0.1156 25 1 1.8600 -1.9179 3.4309 26 1 2.1003 -1.6571 -1.1988 27 1 0.4807 1.5683 -2.2817 28 1 0.2732 -0.7983 -4.2009 29 1 -0.3573 -0.7387 -2.5367 30 1 -1.8463 1.1367 -3.1603 31 1 -2.1467 -0.2767 -4.1992 32 1 -0.7762 0.7350 -5.8773 33 1 -0.6188 3.0236 -4.0264 34 1 -0.0177 2.9958 -5.7015 35 1 1.8203 2.6085 -4.0730 36 1 1.5634 1.1847 -5.1112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687248645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:18:40 Heat of formation + Delta-G solvation = -113.051162 kcal Electronic energy + Delta-G solvation = -19213.906259 eV Core-core repulsion = 16244.252789 eV Total energy + Delta-G solvation = -2969.653470 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73235 -38.27302 -37.43948 -37.06433 -34.38562 -33.10959 -31.90158 -30.66341 -26.83599 -25.13693 -24.04897 -22.53318 -21.79874 -20.37481 -19.80213 -18.53195 -17.96460 -17.22377 -16.62997 -16.04813 -15.70772 -15.43533 -15.27456 -14.95663 -14.59917 -14.46402 -14.33913 -13.87127 -13.47116 -13.30979 -13.21377 -13.18074 -13.14808 -12.77649 -12.36905 -12.26728 -12.01618 -11.86092 -11.72584 -11.63383 -11.61444 -11.26450 -10.41843 -10.27725 -9.35178 -8.78079 -6.38009 -0.73733 1.44036 1.54445 1.70073 1.80554 2.46603 2.73952 2.97542 3.08665 3.34733 3.40114 3.61542 3.97157 4.04728 4.25865 4.31056 4.35390 4.51900 4.58591 4.63666 4.71512 4.76104 4.81214 4.87665 4.99461 5.06815 5.17153 5.36528 5.55567 5.88066 6.02156 6.03309 6.21438 6.48708 6.58752 7.34850 8.57502 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.025746 B = 0.007216 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.274992 B = 3879.382235 C = 4195.600521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.246 3.754 3 H 0.034 0.966 4 C -0.621 4.621 5 H 0.028 0.972 6 C -0.005 4.005 7 N -0.922 5.922 8 Si 1.057 2.943 9 H -0.283 1.283 10 H -0.275 1.275 11 H -0.228 1.228 12 N -1.101 6.101 13 S 2.597 3.403 14 O -1.005 7.005 15 O -0.996 6.996 16 C -0.563 4.563 17 C -0.145 4.145 18 C 0.068 3.932 19 N -0.687 5.687 20 C 0.070 3.930 21 C -0.152 4.152 22 H 0.053 0.947 23 H 0.069 0.931 24 H 0.058 0.942 25 H 0.257 0.743 26 H 0.412 0.588 27 H 0.151 0.849 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.349 0.651 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.820 6.472 -17.222 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.139 3.861 3 H 0.052 0.948 4 C -0.660 4.660 5 H 0.047 0.953 6 C -0.206 4.206 7 N -0.556 5.556 8 Si 0.877 3.123 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.151 1.151 12 N -0.859 5.859 13 S 2.696 3.304 14 O -0.995 6.995 15 O -0.986 6.986 16 C -0.677 4.677 17 C -0.185 4.185 18 C -0.063 4.063 19 N -0.315 5.315 20 C -0.061 4.061 21 C -0.193 4.193 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.077 0.923 25 H 0.066 0.934 26 H 0.245 0.755 27 H 0.169 0.831 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.167 0.833 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.734 8.281 -16.384 20.330 hybrid contribution 1.312 -2.698 -0.213 3.008 sum -7.421 5.583 -16.597 19.019 Atomic orbital electron populations 1.22605 0.96199 1.02061 1.01432 1.18694 0.92138 0.92248 0.82984 0.94820 1.22208 1.40790 1.10122 0.92861 0.95331 1.26962 0.92628 1.09259 0.91758 1.70965 1.45779 1.05707 1.33152 0.83948 0.79574 0.71417 0.77368 1.20847 1.20067 1.15103 1.55228 1.84143 1.19107 1.27427 1.05228 0.78023 0.74181 0.72987 1.93522 1.62675 1.63503 1.79827 1.93489 1.82074 1.59358 1.63711 1.30352 1.18001 1.10057 1.09298 1.22205 0.96820 0.95552 1.03928 1.22006 0.94319 0.97048 0.92926 1.60686 1.46779 1.14933 1.09110 1.22013 0.87770 0.94050 1.02276 1.22279 1.02896 0.99768 0.94355 0.92773 0.91253 0.92312 0.93366 0.75486 0.83086 0.90095 0.89180 0.90184 0.88552 0.83307 0.90053 0.88070 0.89260 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.82 8.40 71.98 0.60 -5.22 16 2 C 0.25 10.72 2.38 44.24 0.11 10.82 16 3 H 0.03 1.51 6.07 -2.39 -0.01 1.50 16 4 C -0.62 -33.96 8.96 25.60 0.23 -33.73 16 5 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 6 C 0.00 -0.26 5.18 84.66 0.44 0.18 16 7 N -0.92 -55.65 13.70 21.45 0.29 -55.35 16 8 Si 1.06 47.34 26.49 68.60 1.82 49.15 16 9 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.23 -8.45 6.23 99.48 0.62 -7.83 16 12 N -1.10 -42.42 5.18 -172.51 -0.89 -43.31 16 13 S 2.60 89.67 4.87 -56.49 -0.28 89.40 16 14 O -1.01 -43.09 17.43 -127.65 -2.23 -45.32 16 15 O -1.00 -37.60 17.86 -127.65 -2.28 -39.88 16 16 C -0.56 -13.08 2.24 30.67 0.07 -13.01 16 17 C -0.14 -2.86 4.90 30.65 0.15 -2.71 16 18 C 0.07 1.07 6.55 86.33 0.57 1.63 16 19 N -0.69 -10.26 6.87 -514.02 -3.53 -13.79 16 20 C 0.07 1.02 6.55 86.33 0.57 1.59 16 21 C -0.15 -2.85 5.37 30.65 0.16 -2.68 16 22 H 0.05 2.03 5.60 -2.39 -0.01 2.02 16 23 H 0.07 1.84 5.26 -2.39 -0.01 1.83 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.26 15.71 8.73 -92.70 -0.81 14.90 16 26 H 0.41 15.49 8.80 -96.74 -0.85 14.63 16 27 H 0.15 3.24 6.72 -2.39 -0.02 3.23 16 28 H 0.08 1.58 8.01 -2.39 -0.02 1.56 16 29 H 0.09 1.85 6.77 -2.39 -0.02 1.83 16 30 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.35 4.48 8.86 -89.69 -0.79 3.69 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 34 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -72.01 293.24 -4.87 -76.88 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: -0.67 Total: 25.34 kcal Atomic # 6 Polarization: -46.01 SS G_CDS: 2.89 Total: -43.12 kcal Atomic # 7 Polarization: -108.33 SS G_CDS: -4.13 Total: -112.46 kcal Atomic # 8 Polarization: -80.69 SS G_CDS: -4.51 Total: -85.20 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.82 Total: 49.15 kcal Atomic # 16 Polarization: 89.67 SS G_CDS: -0.28 Total: 89.40 kcal Total: -72.01 -4.87 -76.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687248645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.169 kcal (2) G-P(sol) polarization free energy of solvation -72.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds