Wall clock time and date at job start Mon Mar 30 2020 05:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99956 * 2 1 4 4 C 1.50694 * 109.47004 * 274.99543 * 3 2 1 5 5 H 1.08003 * 120.00389 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00057 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99695 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00345 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46738 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47446 * 119.99512 * 8 6 4 11 11 H 1.48501 * 109.46967 * 240.00010 * 8 6 4 12 12 S 1.65599 * 119.99767 * 179.97438 * 2 1 3 13 13 O 1.42094 * 104.27973 * 333.93766 * 12 2 1 14 14 O 1.42098 * 104.27893 * 206.07460 * 12 2 1 15 15 C 1.81405 * 104.44604 * 90.00848 * 12 2 1 16 16 C 1.53118 * 109.52308 * 184.99982 * 15 12 2 17 17 C 1.53034 * 109.28068 * 177.55535 * 16 15 12 18 18 N 1.46848 * 109.52504 * 300.82023 * 17 16 15 19 19 C 1.46847 * 111.19556 * 61.74015 * 18 17 16 20 20 C 1.53044 * 109.52516 * 298.25761 * 19 18 17 21 21 H 1.08996 * 109.47452 * 270.00140 * 1 2 3 22 22 H 1.08999 * 109.46690 * 30.00325 * 1 2 3 23 23 H 1.08998 * 109.46986 * 150.00071 * 1 2 3 24 24 H 1.08994 * 109.47294 * 34.99973 * 3 2 1 25 25 H 1.09008 * 109.46842 * 154.99686 * 3 2 1 26 26 H 0.97005 * 119.99657 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.57543 * 64.83910 * 15 12 2 28 28 H 1.09001 * 109.50624 * 57.61557 * 16 15 12 29 29 H 1.08998 * 109.50047 * 297.50014 * 16 15 12 30 30 H 1.09000 * 109.46341 * 180.80474 * 17 16 15 31 31 H 1.08999 * 109.46274 * 60.83372 * 17 16 15 32 32 H 1.00901 * 111.00066 * 185.83397 * 18 17 16 33 33 H 1.08999 * 109.46628 * 58.27319 * 19 18 17 34 34 H 1.09003 * 109.46158 * 178.24166 * 19 18 17 35 35 H 1.08996 * 109.50067 * 299.23984 * 20 19 18 36 36 H 1.08993 * 109.50192 * 179.12052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0007 2.9502 -1.6664 7 7 3.5043 3.6464 -0.6706 8 14 3.1786 3.5666 -3.4208 9 1 2.5303 2.6071 -4.3506 10 1 2.5280 4.8954 -3.5471 11 1 4.6195 3.6866 -3.7595 12 16 2.2929 -1.4342 0.0006 13 8 1.3969 -2.3559 0.6061 14 8 3.5394 -1.1190 0.6058 15 6 2.5194 -1.8267 -1.7559 16 6 3.1704 -3.2059 -1.8922 17 6 3.3031 -3.5577 -3.3756 18 7 1.9741 -3.5601 -4.0002 19 6 1.3490 -2.2335 -3.9235 20 6 1.1579 -1.8422 -2.4563 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6502 2.0043 0.5894 25 1 3.1858 1.1177 0.4344 26 1 3.9678 4.4800 -0.8472 27 1 3.1586 -1.0749 -2.2186 28 1 2.5500 -3.9519 -1.3954 29 1 4.1585 -3.1890 -1.4323 30 1 3.7532 -4.5454 -3.4758 31 1 3.9348 -2.8191 -3.8689 32 1 2.0240 -3.8816 -4.9553 33 1 1.9899 -1.5011 -4.4142 34 1 0.3798 -2.2594 -4.4217 35 1 0.5058 -2.5667 -1.9685 36 1 0.7083 -0.8510 -2.3997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687250426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:31 Heat of formation + Delta-G solvation = -76.780746 kcal Electronic energy + Delta-G solvation = -19338.456147 eV Core-core repulsion = 16370.375481 eV Total energy + Delta-G solvation = -2968.080667 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.40492 -36.50611 -35.59252 -35.25332 -32.53454 -32.25698 -30.80015 -27.80255 -25.10924 -24.14510 -23.15777 -22.15374 -19.85183 -18.20304 -17.09865 -16.72801 -16.44959 -15.79621 -15.46383 -14.65894 -14.58686 -13.97403 -13.78246 -13.51357 -13.26505 -13.11435 -12.31921 -12.28164 -12.14949 -12.02206 -11.68876 -11.47562 -11.24763 -11.19022 -11.11944 -10.85685 -10.78873 -10.56594 -10.49253 -10.16624 -9.88001 -9.62075 -8.54550 -8.52142 -7.97159 -6.15525 -4.23168 0.93495 3.19306 3.26803 3.28674 3.39109 4.16868 4.29704 4.39495 4.54758 4.68156 4.97854 5.09912 5.18241 5.24994 5.41256 5.51678 5.60509 5.65606 5.74687 5.77903 5.81095 5.97564 6.05630 6.11267 6.26270 6.34197 6.56491 6.93817 7.30756 7.33823 7.41179 7.63490 7.81579 8.10592 8.81995 9.43270 10.92289 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.009124 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.892587 B = 3068.005041 C = 3885.185579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.988 5.988 3 C 0.242 3.758 4 C -0.544 4.544 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 S 2.614 3.386 13 O -0.975 6.975 14 O -0.958 6.958 15 C -0.594 4.594 16 C -0.105 4.105 17 C 0.067 3.933 18 N -0.691 5.691 19 C 0.065 3.935 20 C -0.098 4.098 21 H 0.045 0.955 22 H 0.073 0.927 23 H 0.056 0.944 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.264 0.736 27 H 0.141 0.859 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.341 0.659 33 H 0.036 0.964 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 -10.949 -6.018 13.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.827 5.827 3 C 0.120 3.880 4 C -0.584 4.584 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 S 2.707 3.293 13 O -0.965 6.965 14 O -0.948 6.948 15 C -0.702 4.702 16 C -0.144 4.144 17 C -0.063 4.063 18 N -0.322 5.322 19 C -0.065 4.065 20 C -0.136 4.136 21 H 0.063 0.937 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.159 0.841 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.617 -11.446 -4.615 12.861 hybrid contribution 0.671 1.301 -2.435 2.841 sum -2.947 -10.145 -7.050 12.701 Atomic orbital electron populations 1.21302 0.80058 1.02051 1.00898 1.57254 1.13977 1.22723 1.88773 1.19247 0.92544 0.78890 0.97343 1.21621 1.36674 1.07054 0.93037 0.91921 1.24966 0.95181 0.96553 0.97184 1.69950 1.36585 1.15125 1.30832 0.86540 0.77927 0.78894 0.84630 1.19768 1.20817 1.20886 1.04833 0.74030 0.73321 0.77093 1.93507 1.65003 1.64178 1.73844 1.93554 1.44730 1.83092 1.73474 1.30630 1.05952 1.05994 1.27616 1.21400 1.00916 0.93819 0.98280 1.21783 0.89707 1.00665 0.94161 1.60281 1.22167 1.26933 1.22837 1.21835 0.99080 0.89132 0.96492 1.21400 0.93346 1.03081 0.95800 0.93656 0.90853 0.92570 0.94250 0.92843 0.92570 0.84083 0.89931 0.90366 0.90458 0.94661 0.84148 0.94601 0.90470 0.90126 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.76 9.30 59.85 0.56 2.32 16 2 N -0.99 -20.31 2.76 -123.06 -0.34 -20.65 16 3 C 0.24 5.99 5.39 -5.20 -0.03 5.96 16 4 C -0.54 -13.97 9.38 -34.44 -0.32 -14.29 16 5 H 0.06 1.52 7.76 -52.48 -0.41 1.11 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 8 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 S 2.61 51.42 4.83 -107.50 -0.52 50.90 16 13 O -0.97 -19.84 17.08 -57.54 -0.98 -20.82 16 14 O -0.96 -22.30 16.53 -57.54 -0.95 -23.25 16 15 C -0.59 -9.64 2.94 -26.61 -0.08 -9.72 16 16 C -0.10 -1.47 5.39 -26.65 -0.14 -1.61 16 17 C 0.07 0.80 6.55 -3.83 -0.03 0.78 16 18 N -0.69 -8.09 6.85 -113.81 -0.78 -8.87 16 19 C 0.06 0.82 6.55 -3.83 -0.03 0.80 16 20 C -0.10 -1.43 4.30 -26.65 -0.11 -1.54 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 23 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 24 H 0.04 1.02 8.11 -51.93 -0.42 0.60 16 25 H 0.05 1.46 6.82 -51.92 -0.35 1.11 16 26 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 27 H 0.14 2.42 8.14 -51.93 -0.42 2.00 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.34 3.17 8.90 -39.29 -0.35 2.82 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 36 H 0.09 1.33 6.70 -51.93 -0.35 0.98 16 LS Contribution 301.95 15.07 4.55 4.55 Total: -1.00 -31.72 301.95 -9.16 -40.88 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.58 Total: 2.08 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -0.28 Total: -15.69 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.38 Total: -53.99 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -1.93 Total: -44.07 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 51.42 SS G_CDS: -0.52 Total: 50.90 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.72 -9.16 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687250426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.898 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds