Wall clock time and date at job start Mon Mar 30 2020 05:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99956 * 2 1 4 4 C 1.50694 * 109.47004 * 274.99543 * 3 2 1 5 5 H 1.08003 * 120.00389 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00057 * 180.02562 * 4 3 2 7 7 N 1.31523 * 119.99695 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00345 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46738 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47446 * 119.99512 * 8 6 4 11 11 H 1.48501 * 109.46967 * 240.00010 * 8 6 4 12 12 S 1.65599 * 119.99767 * 179.97438 * 2 1 3 13 13 O 1.42094 * 104.27973 * 333.93766 * 12 2 1 14 14 O 1.42098 * 104.27893 * 206.07460 * 12 2 1 15 15 C 1.81405 * 104.44604 * 90.00848 * 12 2 1 16 16 C 1.53118 * 109.52308 * 184.99982 * 15 12 2 17 17 C 1.53034 * 109.28068 * 177.55535 * 16 15 12 18 18 N 1.46848 * 109.52504 * 300.82023 * 17 16 15 19 19 C 1.46847 * 111.19556 * 61.74015 * 18 17 16 20 20 C 1.53044 * 109.52516 * 298.25761 * 19 18 17 21 21 H 1.08996 * 109.47452 * 270.00140 * 1 2 3 22 22 H 1.08999 * 109.46690 * 30.00325 * 1 2 3 23 23 H 1.08998 * 109.46986 * 150.00071 * 1 2 3 24 24 H 1.08994 * 109.47294 * 34.99973 * 3 2 1 25 25 H 1.09008 * 109.46842 * 154.99686 * 3 2 1 26 26 H 0.97005 * 119.99657 * 180.02562 * 7 6 4 27 27 H 1.08992 * 109.57543 * 64.83910 * 15 12 2 28 28 H 1.09001 * 109.50624 * 57.61557 * 16 15 12 29 29 H 1.08998 * 109.50047 * 297.50014 * 16 15 12 30 30 H 1.09000 * 109.46341 * 180.80474 * 17 16 15 31 31 H 1.08999 * 109.46274 * 60.83372 * 17 16 15 32 32 H 1.00901 * 111.00066 * 185.83397 * 18 17 16 33 33 H 1.08999 * 109.46628 * 58.27319 * 19 18 17 34 34 H 1.09003 * 109.46158 * 178.24166 * 19 18 17 35 35 H 1.08996 * 109.50067 * 299.23984 * 20 19 18 36 36 H 1.08993 * 109.50192 * 179.12052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3415 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0007 2.9502 -1.6664 7 7 3.5043 3.6464 -0.6706 8 14 3.1786 3.5666 -3.4208 9 1 2.5303 2.6071 -4.3506 10 1 2.5280 4.8954 -3.5471 11 1 4.6195 3.6866 -3.7595 12 16 2.2929 -1.4342 0.0006 13 8 1.3969 -2.3559 0.6061 14 8 3.5394 -1.1190 0.6058 15 6 2.5194 -1.8267 -1.7559 16 6 3.1704 -3.2059 -1.8922 17 6 3.3031 -3.5577 -3.3756 18 7 1.9741 -3.5601 -4.0002 19 6 1.3490 -2.2335 -3.9235 20 6 1.1579 -1.8422 -2.4563 21 1 -0.3634 0.0000 1.0276 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 1.6502 2.0043 0.5894 25 1 3.1858 1.1177 0.4344 26 1 3.9678 4.4800 -0.8472 27 1 3.1586 -1.0749 -2.2186 28 1 2.5500 -3.9519 -1.3954 29 1 4.1585 -3.1890 -1.4323 30 1 3.7532 -4.5454 -3.4758 31 1 3.9348 -2.8191 -3.8689 32 1 2.0240 -3.8816 -4.9553 33 1 1.9899 -1.5011 -4.4142 34 1 0.3798 -2.2594 -4.4217 35 1 0.5058 -2.5667 -1.9685 36 1 0.7083 -0.8510 -2.3997 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687250426.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:40:30 Heat of formation + Delta-G solvation = -101.516296 kcal Electronic energy + Delta-G solvation = -19339.528761 eV Core-core repulsion = 16370.375481 eV Total energy + Delta-G solvation = -2969.153281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 262.114 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.46838 -38.16343 -37.29457 -36.93349 -34.50211 -33.36594 -31.84240 -29.65646 -26.78392 -25.32057 -24.37356 -23.82486 -20.96756 -19.78905 -18.68685 -18.37995 -18.00240 -17.31468 -16.94978 -16.40424 -15.64481 -15.21628 -15.17746 -14.84623 -14.65360 -14.47480 -13.98693 -13.91271 -13.40365 -13.30231 -13.22217 -13.13545 -13.00423 -12.89680 -12.45501 -12.37968 -12.28866 -12.03995 -11.92494 -11.73318 -11.58226 -11.05919 -10.60622 -9.67959 -9.41177 -8.18254 -6.33442 -0.61826 1.41375 1.42439 1.53609 1.79110 2.40319 2.89008 3.13193 3.16449 3.28406 3.45730 3.66814 3.99826 4.08612 4.16750 4.41852 4.51620 4.55327 4.62010 4.70413 4.74974 4.83647 4.87812 4.93656 4.98942 5.09105 5.15953 5.29740 5.48197 5.74403 5.91609 5.99831 6.07944 6.54593 6.80239 7.37465 8.90181 Molecular weight = 262.11amu Principal moments of inertia in cm(-1) A = 0.018027 B = 0.009124 C = 0.007205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.892587 B = 3068.005041 C = 3885.185579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.544 4.544 5 H 0.079 0.921 6 C 0.008 3.992 7 N -0.930 5.930 8 Si 0.961 3.039 9 H -0.254 1.254 10 H -0.280 1.280 11 H -0.285 1.285 12 S 2.609 3.391 13 O -0.985 6.985 14 O -1.005 7.005 15 C -0.568 4.568 16 C -0.114 4.114 17 C 0.069 3.931 18 N -0.692 5.692 19 C 0.067 3.933 20 C -0.102 4.102 21 H 0.050 0.950 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.019 0.981 25 H 0.017 0.983 26 H 0.265 0.735 27 H 0.134 0.866 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.358 0.642 33 H 0.030 0.970 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.566 -12.337 -8.804 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.834 5.834 3 C 0.132 3.868 4 C -0.583 4.583 5 H 0.097 0.903 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.786 3.214 9 H -0.177 1.177 10 H -0.206 1.206 11 H -0.211 1.211 12 S 2.707 3.293 13 O -0.975 6.975 14 O -0.995 6.995 15 C -0.681 4.681 16 C -0.153 4.153 17 C -0.062 4.062 18 N -0.325 5.325 19 C -0.064 4.064 20 C -0.141 4.141 21 H 0.068 0.932 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.037 0.963 25 H 0.036 0.964 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.053 0.947 32 H 0.178 0.822 33 H 0.048 0.952 34 H 0.118 0.882 35 H 0.105 0.895 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.546 -12.849 -7.361 15.490 hybrid contribution 0.922 1.638 -1.539 2.430 sum -3.624 -11.210 -8.900 14.766 Atomic orbital electron populations 1.21541 0.78013 1.03621 1.01840 1.57118 1.15367 1.21348 1.89610 1.18783 0.91002 0.80196 0.96825 1.21944 1.35900 1.06944 0.93559 0.90286 1.25886 0.94961 0.96953 1.01370 1.70095 1.37848 1.15738 1.33305 0.85462 0.77701 0.78548 0.79723 1.17745 1.20615 1.21088 1.04845 0.72881 0.72795 0.78756 1.93481 1.64869 1.63857 1.75340 1.93493 1.46512 1.83627 1.75891 1.30354 1.07570 1.07341 1.22885 1.21593 1.01100 0.92148 1.00488 1.21813 0.90083 1.02129 0.92158 1.60251 1.21874 1.26220 1.24195 1.21829 1.00349 0.89493 0.94713 1.21524 0.91943 1.03333 0.97307 0.93155 0.90390 0.89836 0.96308 0.96446 0.92564 0.84836 0.89510 0.89854 0.87824 0.94712 0.82190 0.95186 0.88209 0.89471 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.16 9.30 127.77 1.19 4.35 16 2 N -1.00 -41.36 2.76 -543.24 -1.50 -42.85 16 3 C 0.26 13.08 5.39 85.63 0.46 13.55 16 4 C -0.54 -27.94 9.38 25.60 0.24 -27.70 16 5 H 0.08 3.71 7.76 -2.91 -0.02 3.69 16 6 C 0.01 0.41 5.46 84.65 0.46 0.87 16 7 N -0.93 -54.07 13.29 21.45 0.28 -53.79 16 8 Si 0.96 41.21 29.54 68.60 2.03 43.24 16 9 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 10 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 S 2.61 103.27 4.83 -56.49 -0.27 102.99 16 13 O -0.98 -39.69 17.08 -127.65 -2.18 -41.87 16 14 O -1.00 -48.57 16.53 -127.65 -2.11 -50.68 16 15 C -0.57 -17.65 2.94 30.67 0.09 -17.56 16 16 C -0.11 -2.94 5.39 30.65 0.17 -2.78 16 17 C 0.07 1.40 6.55 86.32 0.57 1.97 16 18 N -0.69 -13.49 6.85 -513.99 -3.52 -17.01 16 19 C 0.07 1.44 6.55 86.33 0.57 2.01 16 20 C -0.10 -2.71 4.30 30.65 0.13 -2.58 16 21 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 22 H 0.08 2.51 8.07 -2.39 -0.02 2.49 16 23 H 0.08 2.29 6.57 -2.39 -0.02 2.28 16 24 H 0.02 1.02 8.11 -2.39 -0.02 1.00 16 25 H 0.02 1.01 6.82 -2.38 -0.02 1.00 16 26 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 27 H 0.13 4.44 8.14 -2.39 -0.02 4.42 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.36 5.12 8.90 -89.69 -0.80 4.32 16 33 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 2.21 8.13 -2.39 -0.02 2.19 16 36 H 0.09 2.35 6.70 -2.39 -0.02 2.33 16 Total: -1.00 -68.77 301.95 -3.13 -71.90 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.27 Total: 15.94 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 3.87 Total: -27.87 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -4.73 Total: -113.66 kcal Atomic # 8 Polarization: -88.26 SS G_CDS: -4.29 Total: -92.55 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 103.27 SS G_CDS: -0.27 Total: 102.99 kcal Total: -68.77 -3.13 -71.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687250426.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.615 kcal (2) G-P(sol) polarization free energy of solvation -68.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds